Gene

KWMTBOMO13675

Pre Gene Modal

BGIBMGA011082

Annotation

PREDICTED:_slit_homolog_3_protein-like_[Bombyx_mori]

Location

Bomo_Chr23(+):5467311-5471516      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.968

CDS

ATGTGGTGCTGGACATGTCAGGGTGCCGCTGCGGCGTCACTGACAAGTAGAGTGGCGGAGGCGCCACAGGAGTGTGAATGGCAGCGGGTTTCTGGCGATGCAAGCGAGAGTACCAGAGTGCAGCTCGCGTGCTCCTTGAGGACCGCAGCCGGAGCGACTGAGCTACTGACCGGTCTGAGTGCTTCACAGGCTCAACGCATCACAGTTCTAGACCTTCATTGTACCGATGTTCTCTTTTTTGAGAGTTCACTTGATTTTGGTCGAAGAAAAGAAGAGGGAACTCAATTGCTGTCCCGGTTTCACAACTTGAGAGAATTAAGAATAGAATCCTGTAAAATACGCTATGTGCCGTCAGCGGTGCTATCACCGCTTAGTGGCCTACGTAGTTTGACTATTCGGACTCATAATTCTGATTGGTCAGCGATGTCGATGGAATTCCACAGAGATACTTTTCGAGGGCTGACGGATTTGAGATCACTTGATTTAGGCGATAACAACATATGGATTTTGCCGTCGGAAATATTTTGTGTTCTGTACAATTTGAAAGAACTAAATGTTACCCAGAATAGATTGCAAGATATATCAAACTTAGGCTTTTCTGACTGGGGTAATGGACCAACGGCACCTGGTAAATCGTGTAACACAGTTCTTGAGACCTTGGATATGTCGTACAATGAAATTAGCGGCCTACCTGATAACGGTTTGTCAAGTTTACGCGCACTTCAAAAATTGTTTCTGCAAAACAATAGGATTTCAAACGTCGCTGACCGAGCTTTCGTAGGTTTAAGTGACTTACAAATACTGAATTTATCAACAAATGCTCTAACTGCCTTGCCTCCGGAGATGTTTCAATCTTCAAGAGATATAAAACAAATTTACTTAAACAACAACAGCTTAAGCGTATTGGCGCCTGGACTTCTAGAAGGATTAGACCAATTGCAGATATTAGATTTATCAGTCAATGAATTGACTAGTGAATGGATAAACAGAGATACATTCTCTGGATTGGTTCGGTTGATTGTTCTGAATCTATCTCACAACAGAATTACGAAAATTGATGCTCTATTATTTCAAGATCTTAACAACCTACAATTTCTGAGTTTGGAATATAATAACGTAGGTCGTATCGCAGAAGGTGCATTTTCGAACTTGAAGAATCTTCATTCCCTTTCACTGGCTCACAATAACATCATAGAAGTGGATAGCGGTCATTTCTCAAATCTATACGTATTAAATCAGCTGTTTCTTGACGGCAACAGAATTACTAAGGTCGACATAAGGTCTTTTGAAAATATTACAAAACTCCACGACTTGGGTTTGAGTGGAAATCAACTAACCGACGTACCTGAAGCGATCAAGACTTTAAGGTTCTTAACATCCTTGGATTTAGGAATGAATAAAATAACAAAAGTGATAACTTCGCACTTTGACGGCCTTGATGATTTGTATGGTTTAAGACTTGTAGGAAATAAAATCGAGAAAATTTCTAAGGATACATTTGCGGCTTTACCGTCTCTGCAAATATTGAACTTGGCTTCGAATAACATCGATCAAATAGACGACGGGGCTTTTGCGTCGAACCAGCAGTTGAAAGCGATTGGATTAGATGGTAACAAATTGGTAGACTTAAAAGGGATTTTTACTAAAACTCAGCCGCTTGTCTGGTTAAATGTATCCAACAATGAATTACTTTGGTTTGATTACAGTCATATACCATCCAATCTAGAATGGTTAGATATGCACGAAAATAAAATTGACAAGTTAGATGATACGTATGGATTGAAGGAGACAACCATGGTGAAGATGCTCGATGTTAGTAATAACAAAATCAAGAGCGTAGATGAGCTTTCCTTTCCAAGCAGTATTGAGACTGTAGTTTTAAACAATAATAATATTGAAAAAGTTAGTCCCGGTACATTCTTGCAAAAATACAATTTGAATAAGGTTATGTTGTATTCGAACAAAATAAAAACATTAGAGCTCGGTGCATTCGCGATATCATCTGTTCCAGACGATAAAGATTTACCAGAGTTCTATATCAGTGAAAATCCTTTTGTGTGCGACTGCACAATGGAATGGCTCCAAACAATTAATCAAGTAAGCGACCTCAGGCAGCGCCCAAGAGTAATGGATTTAGAAAGCGTGAGGTGCTCTTTAACCCATTCACGGAGGAAATCGGAGACGCTCTTGCTCGAAGTGAAGTCTTCAGAATTTTTGTGCGAATATGAATCGCACTGCTTCACAGTCTGTCATTGCTGTGACTTTGACGCCTGCGATTGTAAGATGACCTGTCCAGATAGGTGTTCGTGCTATCACGATCAGACTTGGACCACCACTAACGTAGTCGATTGTTCGAATGCCGGCTACGATCACGTGCCCGACAGAATACCGATGGACGCGACCGAAATATATTTAGATGGTAACAGTTTGAAAGAGCTCGGAAATCACGTTTTCATTGGCAAAAAGAAACTACAAGTTTTATATCTCAACAACAGTAATATTGATATAATACAAAATAGAACATTTAACGGAATCGACTCTTTGAGAGTGCTCCATTTAGAAAACAATAACTTGGAAGTATTGAGGAACACGCAATTCACGAGGCTACCTCATTTGAACGAGCTCTACTTGAGCAGCAATAAGATCAAATTTATCGAGAATGATACTTTTAATTATCTGCCTTCTTTAGAGTTCTTGGACCTCGATAATAATGGTTACGTTGATTACATGCCGTGGCGAGTCATTTCCGACAGCGATCCGCGCATGCGTGTCTCTGTAGATGGAAACAACTGGATATGTGACTGTAAAGATGTGGCTCAATTGAATCAGTGGCTAATAAAAAAATCAAAAGACACCGAGAACATGATGTGCTACTTTGCTCACGGTCAGCCCATGAATAAAACCATCGCGACCGTTGCTAAGGAATGTAAAACAGAAACGACTACCGAAGAAACTGGTACCGAGACGTTAAAACGATTATTCATCGAATCGAATGACGGCGTCGAAAATTATATTCCATATATTGCAGCCGTGTTGATAATAGCAATCATTCTATTACTGATGTGCGCTCTTCTTTTCATGTTCAGAGAAGATTTTAAACTATGGATGCACTCTAGATATGGTATTAGAATATTCAGTTCCTCCCCCCGGGACCTTAACGACAGCAAAAACAAACGGTTTGATGCATTTTTTGTGTATAATCCACGCGACGAAGACTTTGTGACTCGGGCGGTGAGTTCGGAATTAGAAAATATGGGACACACTTTGTGCTTACAACACCGGGACCTGCAGCTTATAGAGAGACGTTCGGGTGATAGTTTAGTGAGTGCCGCGGAAAGTTCTAAGAGACTGATAATAGTTTTATCGATAAACTTTTTACAACAAGAGTGGTACGCGCCTGAATCTAAAGCGGCGGTGCAAAGTGCTATAAATTCAGTGAATGTGAGACACAGACGACAAAAGATAATTTTTCTAGTAACAACAGATTTAAGTGCCATAAACATAGATCCTGACTTGAAAGTGCTTCTTAAAACGTGTACAGTGATCGTGTGGGGTGAGAGAAATTGTTGGGAAAAACTAAATTTTCGGTTACCCGATGTGGACGTAACGTTACCGAATCGGACGCTTCATAACGCTAATAATATTATAAAAAGTGGTAACAGAGAAGGATTCGGTAGGCACGGTAATTTAAGGTACACCGCGCCACCGACTTCTCATGATCCTTGGTACAAATATGGTATGGCTCCTCCAATACTAATGATGTCTAGTCCGTTGCATTCGACCAGCGCCAGCGCGGAAGTCTCTGCTCGGAGCACGGAGGACGAGACGTGTTCGGTCGCTAGCAGTGAAGGTCGACCTGACGACCGTCTGCCTCACCACCATAGCTACGTCTCTATAGACAACCATCAGTGCGAGGAACGCCCTCTTAGGCCCGGCCAGCAAATACCAATGTCCAGTACAGCTCATACAAGAAAGACATATTTCGTTTAA

Protein

MWCWTCQGAAAASLTSRVAEAPQECEWQRVSGDASESTRVQLACSLRTAAGATELLTGLSASQAQRITVLDLHCTDVLFFESSLDFGRRKEEGTQLLSRFHNLRELRIESCKIRYVPSAVLSPLSGLRSLTIRTHNSDWSAMSMEFHRDTFRGLTDLRSLDLGDNNIWILPSEIFCVLYNLKELNVTQNRLQDISNLGFSDWGNGPTAPGKSCNTVLETLDMSYNEISGLPDNGLSSLRALQKLFLQNNRISNVADRAFVGLSDLQILNLSTNALTALPPEMFQSSRDIKQIYLNNNSLSVLAPGLLEGLDQLQILDLSVNELTSEWINRDTFSGLVRLIVLNLSHNRITKIDALLFQDLNNLQFLSLEYNNVGRIAEGAFSNLKNLHSLSLAHNNIIEVDSGHFSNLYVLNQLFLDGNRITKVDIRSFENITKLHDLGLSGNQLTDVPEAIKTLRFLTSLDLGMNKITKVITSHFDGLDDLYGLRLVGNKIEKISKDTFAALPSLQILNLASNNIDQIDDGAFASNQQLKAIGLDGNKLVDLKGIFTKTQPLVWLNVSNNELLWFDYSHIPSNLEWLDMHENKIDKLDDTYGLKETTMVKMLDVSNNKIKSVDELSFPSSIETVVLNNNNIEKVSPGTFLQKYNLNKVMLYSNKIKTLELGAFAISSVPDDKDLPEFYISENPFVCDCTMEWLQTINQVSDLRQRPRVMDLESVRCSLTHSRRKSETLLLEVKSSEFLCEYESHCFTVCHCCDFDACDCKMTCPDRCSCYHDQTWTTTNVVDCSNAGYDHVPDRIPMDATEIYLDGNSLKELGNHVFIGKKKLQVLYLNNSNIDIIQNRTFNGIDSLRVLHLENNNLEVLRNTQFTRLPHLNELYLSSNKIKFIENDTFNYLPSLEFLDLDNNGYVDYMPWRVISDSDPRMRVSVDGNNWICDCKDVAQLNQWLIKKSKDTENMMCYFAHGQPMNKTIATVAKECKTETTTEETGTETLKRLFIESNDGVENYIPYIAAVLIIAIILLLMCALLFMFREDFKLWMHSRYGIRIFSSSPRDLNDSKNKRFDAFFVYNPRDEDFVTRAVSSELENMGHTLCLQHRDLQLIERRSGDSLVSAAESSKRLIIVLSINFLQQEWYAPESKAAVQSAINSVNVRHRRQKIIFLVTTDLSAINIDPDLKVLLKTCTVIVWGERNCWEKLNFRLPDVDVTLPNRTLHNANNIIKSGNREGFGRHGNLRYTAPPTSHDPWYKYGMAPPILMMSSPLHSTSASAEVSARSTEDETCSVASSEGRPDDRLPHHHSYVSIDNHQCEERPLRPGQQIPMSSTAHTRKTYFV

Similarity

Belongs to the Toll-like receptor family.

Uniprot

A0A2A4JYQ2   A0A2H1VLQ9   A0A346RAF7   A0A0L7L0F7   A0A194REQ7   A0A194PL06   + More
H9JNH9   A0A212EVE6   A0A2P8YLA0   A0A2J7QTB8   A0A067RDD5   T1HTM0   A0A0A9ZIG4   A0A1B6D9Z8   A0A1Y1N5R0   A0A173ADT7   D6WCH9   E0VC85   A0A336MA92   A0A336LWU3   U4U980   A0A182GFV2   Q17DZ2   A0A194PLB4   A0A194R9V1   N0A0T6   J9K5Y3   A0A2A4JHX4   A0A2S2PI41   A0A2H8TSA7   A0A2H1VEQ6   A0A0L7LDH5   A0A346RAF8   A0A2S2QZS4   A0A084WCF6   A0A182FKH9   W5JR01   A0A182WDG0   A0A182RTF7   A0A182N2E6   A0A182KEJ4   A0A182ML25   A0A182YPU4   A0A182QP16   A0A182NZJ4   A0A182HWF3   A0A182UR06   A0A182LHS2   Q7QHH4   A0A182X5J7   A0A182TLV4   A0A182TJZ3   B0X372   F4WCN0   A0A158NHZ4   A0A195BXM2   A0A195DF99   A0A151WXS3   A0A154NZK5   A0A084WCI0   A0A182H5C2   Q16VI7   A0A195CVE8   A0A0M9A8F0   A0A026WSN2   A0A182YPU6   A0A1S4K220   A0A0L7QT80   Q7QHH1   A0A0C9QMR2   A0A1S4FMM1   A0A088AAK1   A0A182JKN8   A0A0J7KUE8   E2BUC9   H9JNC2   B0XFP7   A0A182X5J9   A0A1S4H5Y8   A0A182UWU4   A0A182WDG2   A0A182K0G0   A0A182NZJ6   A0A182HWF1   A0A182LHS4   A0A182UF17   A0A182MNH4   A0A182RTF5   A0A182Q9N9   A0A182N2E1   E1ZY04   K7JAV1   A0A336LW85   A0A336N8Q7   A0A195ESS7   A0A182JLH8   A0A194R9A1   N6T878   A0A1Y1LF69  

Pubmed

29910977    26227816    26354079    19121390    22118469    29403074    + More
24845553    25401762    28004739    18362917    19820115    20566863    23537049    26483478    17510324    23497397    24438588    20920257    23761445    25244985    20966253    12364791    14747013    17210077    21719571    21347285    24508170    30249741    20798317    20075255   

EMBL

NWSH01000423    PCG76502.1    ODYU01003249    SOQ41753.1    MH243023    AXS59157.1    + More
JTDY01003948    KOB68796.1    KQ460473    KPJ14416.1    KQ459600    KPI94116.1    BABH01019465    AGBW02012218    OWR45424.1    PYGN01000514    PSN45021.1    NEVH01011197    PNF31826.1    KK852574    KDR21046.1    ACPB03003065    GBHO01000879    JAG42725.1    GEDC01030532    GEDC01029683    GEDC01020757    GEDC01014780    GEDC01000406    JAS06766.1    JAS07615.1    JAS16541.1    JAS22518.1    JAS36892.1    GEZM01012073    JAV93233.1    KX086265    KK854633    ANG08888.1    PTY17485.1    KQ971311    EEZ99355.1    DS235049    EEB10991.1    UFQT01000297    SSX22958.1    UFQT01000175    SSX21133.1    KB632184    ERL89622.1    JXUM01060447    KQ562102    KXJ76681.1    CH477289    EAT44679.1    KPI94117.1    KPJ14417.1    KC355238    AGK40938.1    ABLF02037547    NWSH01001355    PCG71561.1    GGMR01016492    MBY29111.1    GFXV01005290    MBW17095.1    ODYU01002158    SOQ39297.1    JTDY01001660    KOB73226.1    MH243024    AXS59158.1    GGMS01014055    MBY83258.1    ATLV01022666    KE525335    KFB47900.1    ADMH02000685    ETN65330.1    AXCM01004773    AXCN02001726    APCN01001487    AAAB01008816    EAA05150.4    DS232310    EDS39574.1    GL888070    EGI68210.1    ADTU01001755    KQ976398    KYM92696.1    KQ980905    KYN11517.1    KQ982662    KYQ52653.1    KQ434786    KZC05057.1    ATLV01022669    KFB47924.1    JXUM01111276    KQ565488    KXJ70919.1    CH477591    EAT38569.2    KQ977259    KYN04610.1    KQ435727    KOX78043.1    KK107111    QOIP01000011    EZA59042.1    RLU16722.1    KQ414755    KOC61774.1    EAA05071.4    GBYB01004774    JAG74541.1    LBMM01003120    KMQ93943.1    GL450630    EFN80713.1    BABH01019497    DS232948    EDS26928.1    APCN01001486    AXCM01015215    AXCN02001727    GL435158    EFN73944.1    AAZX01003450    AAZX01009988    UFQT01000128    SSX20587.1    UFQS01003570    UFQT01003570    SSX15766.1    SSX35118.1    KQ981979    KYN31305.1    KPJ14418.1    APGK01047889    KB741092    KB632050    ENN73923.1    ERL88314.1    GEZM01061234    JAV70615.1   

Proteomes

UP000218220    UP000037510    UP000053240    UP000053268    UP000005204    UP000007151    + More
UP000245037    UP000235965    UP000027135    UP000015103    UP000007266    UP000009046    UP000030742    UP000069940    UP000249989    UP000008820    UP000007819    UP000030765    UP000069272    UP000000673    UP000075920    UP000075900    UP000075884    UP000075881    UP000075883    UP000076408    UP000075886    UP000075885    UP000075840    UP000075903    UP000075882    UP000007062    UP000076407    UP000075902    UP000002320    UP000007755    UP000005205    UP000078540    UP000078492    UP000075809    UP000076502    UP000078542    UP000053105    UP000053097    UP000279307    UP000053825    UP000005203    UP000075880    UP000036403    UP000008237    UP000000311    UP000002358    UP000078541    UP000019118   

PRIDE

H9JNH9    H9JNC2   

Pfam

PF13306   LRR_5        + More
PF13855   LRR_8
PF01582   TIR
PF13676   TIR_2
PF00560   LRR_1
PF12799   LRR_4

Interpro

IPR003591   Leu-rich_rpt_typical-subtyp        + More
IPR000157   TIR_dom       
IPR001611   Leu-rich_rpt       
IPR026906   LRR_5       
IPR000372   LRRNT       
IPR035897   Toll_tir_struct_dom_sf       
IPR000483   Cys-rich_flank_reg_C       
IPR032675   LRR_dom_sf       
IPR025875   Leu-rich_rpt_4       

SUPFAM

SSF52200   SSF52200       

Gene 3D

3.40.50.10140     3.80.10.10    

ProteinModelPortal

A0A2A4JYQ2   A0A2H1VLQ9   A0A346RAF7   A0A0L7L0F7   A0A194REQ7   A0A194PL06   + More
H9JNH9   A0A212EVE6   A0A2P8YLA0   A0A2J7QTB8   A0A067RDD5   T1HTM0   A0A0A9ZIG4   A0A1B6D9Z8   A0A1Y1N5R0   A0A173ADT7   D6WCH9   E0VC85   A0A336MA92   A0A336LWU3   U4U980   A0A182GFV2   Q17DZ2   A0A194PLB4   A0A194R9V1   N0A0T6   J9K5Y3   A0A2A4JHX4   A0A2S2PI41   A0A2H8TSA7   A0A2H1VEQ6   A0A0L7LDH5   A0A346RAF8   A0A2S2QZS4   A0A084WCF6   A0A182FKH9   W5JR01   A0A182WDG0   A0A182RTF7   A0A182N2E6   A0A182KEJ4   A0A182ML25   A0A182YPU4   A0A182QP16   A0A182NZJ4   A0A182HWF3   A0A182UR06   A0A182LHS2   Q7QHH4   A0A182X5J7   A0A182TLV4   A0A182TJZ3   B0X372   F4WCN0   A0A158NHZ4   A0A195BXM2   A0A195DF99   A0A151WXS3   A0A154NZK5   A0A084WCI0   A0A182H5C2   Q16VI7   A0A195CVE8   A0A0M9A8F0   A0A026WSN2   A0A182YPU6   A0A1S4K220   A0A0L7QT80   Q7QHH1   A0A0C9QMR2   A0A1S4FMM1   A0A088AAK1   A0A182JKN8   A0A0J7KUE8   E2BUC9   H9JNC2   B0XFP7   A0A182X5J9   A0A1S4H5Y8   A0A182UWU4   A0A182WDG2   A0A182K0G0   A0A182NZJ6   A0A182HWF1   A0A182LHS4   A0A182UF17   A0A182MNH4   A0A182RTF5   A0A182Q9N9   A0A182N2E1   E1ZY04   K7JAV1   A0A336LW85   A0A336N8Q7   A0A195ESS7   A0A182JLH8   A0A194R9A1   N6T878   A0A1Y1LF69  

PDB

4U7L     E-value=1.09083e-34,     Score=372

KEGG

101738193    no KO assigned | (RefSeq) slit homolog 3 protein-like

GO

GO:0007165   GO:0016021   GO:0045087   GO:0004721   GO:0008201   GO:0048495   GO:0005515   GO:0043531   GO:0051276   GO:0016491   GO:0016620   GO:0016787   GO:0003676   GO:0015930  

Length:

1329

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.89126

Exp number, first 60 AAs:

0.00204

Total prob of N-in:

0.00101

outside

1  -  1003

TMhelix

1004  -  1026

inside

1027  -  1329

 

 

Pi

193.330024

Theta

215.376291

Tajima's D

0.036196

CLR

0.234813

CSRT

0.377731113444328

Interpretation

Uncertain