Gene

KWMTBOMO13671

Pre Gene Modal

BGIBMGA011081

Annotation

PREDICTED:_sodium-_and_chloride-dependent_glycine_transporter_1_[Amyelois_transitella]

Location

Bomo_Chr23(+):5385431-5391220      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.836

CDS

ATGAGAATCTTTGTGGGGCTCTCACCTGCCTGGGCCGTGATATTCTACTTCATCATAATAATGTTCGGAGTAGCGCAGCAGATCGCGATCTGGCACTGCGTCATTGCCGGTGTGATGGCTATCAACGCGAAGACGCTTCGCATCTGGGAGACTACGATAACGTTCCTCAGCTGCGTCGTGGGACTGGCCGTTGGACTTGTACTAAGCACTGATGCGGGTATAGCGGTGGTGCAGTTCTGGGACTACGTGTGGGCGGGGTCGTGGTGGTCGTGCGCGGTGCAGGTGGTGGCGGCGTGCGGGGTGTTCGTGGTGCGCGGGCGGCCCTACTCCGCCGACGTGCTGGTGGCCGCGCTGTGCCGCCGCCGCCTGCCCGCCGCGCTGCTCAGCTTCGTCTGGACCGTGGTGCTGCCCGTCTGTCTGTGTGCGATTTGCGTTATGGACTTCAAAGTTGGACAACAACGACAGCTGTACACGTGGAGGAAGCCTGTTGGATACTATCCGATATGGTGTCGTCAAGTGGCTGTCCTGATGCAACAGGGTTGTTTGCTCCTCATACCGGTCACAGCGTTCATACAAACATGGAGGTACATGAATAAAGGACCCCCGGATATCCTAGACCGCATTCAGAACCTGTACCGTCCCCCGGTGGGGGGCGAGGAGCATTCGAGCGGTCCCCCCGCACCCGCGCCCGCCCCCGCGCCTCCCGACCCGCCCCCCAAGTACACGCCGCCGCCCTCATACTCAACGGCCACCGGCGCCAGGCTCCTGCACACACTCAGGAGGAGCTTCAGAACTTTGAGGAGAATAACGTCTCGACCCGAACAACAAACGGACGACGCATCACAAATGCCCATAACGCTGAGCGAGGCCGTCGAGCGCGTCGGCAATCAAACTCATCCACCGGACTACAGCGGAGTGTGCGGTACGCCATCTATTGACATTACAGACGAAACTGACTCGCGCGTTACCCGACCGCGGTCATCGACCTCCAGGAACTCGCTGTCGCTCACCCGCGACTACTTACGTAGATCGTTCGTACGCAAGAGCGACTCCGCGAAAAGCATCAGATCGAGCTTACGCAGGAGCTTCAAGTACGGCGGTGCCTTGACCACGAGTCACGAACATTTGGTACGCGAAGCCGAACCCATATCGAACACCGTCGCGATGTCGGCCATGCTCGACGTCGACCACGCGCCCCACACTCGCAGCATCGCCTCTGTGATATGA

Protein

MRIFVGLSPAWAVIFYFIIIMFGVAQQIAIWHCVIAGVMAINAKTLRIWETTITFLSCVVGLAVGLVLSTDAGIAVVQFWDYVWAGSWWSCAVQVVAACGVFVVRGRPYSADVLVAALCRRRLPAALLSFVWTVVLPVCLCAICVMDFKVGQQRQLYTWRKPVGYYPIWCRQVAVLMQQGCLLLIPVTAFIQTWRYMNKGPPDILDRIQNLYRPPVGGEEHSSGPPAPAPAPAPPDPPPKYTPPPSYSTATGARLLHTLRRSFRTLRRITSRPEQQTDDASQMPITLSEAVERVGNQTHPPDYSGVCGTPSIDITDETDSRVTRPRSSTSRNSLSLTRDYLRRSFVRKSDSAKSIRSSLRRSFKYGGALTTSHEHLVREAEPISNTVAMSAMLDVDHAPHTRSIASVI

Uniprot

H9JNH8   A0A3S2NJ33   A0A2A4JXU6   A0A194PL01   A0A212EVE2   A0A2H1V4B2   + More
A0A194R996   A0A2J7PPT8   A0A1B6LUR6   A0A067QYW6   X2D406   A0A2J7PPR3   A0A1Y1LMR3   N6U0T6   A0A1B6CH68   K7ISJ3   D6WAN6   A0A2A3ENU6   A0A146LFA9   E9IGN2   A0A2P8ZFM0   A0A139WMU5   E0VC55   A0A026W9A5   A0A3L8DM93   A0A226E1G2   A0A158NRR7   A0A1D2M3G4   A0A195ERR2   A0A0P4VFJ6   A0A023F301   A0A2J7PPS4   T1HPL6   A0A0K2TZK3   A0A1I8NVR6   A0A1I8NVR9   B3MC18   B3NQ08   A0A0Q5VM51   A0A336LXG1   A0A3B0JJ74   A0A1W4V0D0   A0A1W4V0S0   A0A1I8MZF8   B4HSG5   A0A1I8MZF5   A0A1I8MZF7   A0A0L0C114   B4LQ28   A0A0Q9WAY1   B4HBE4   A0A0R3NQC6   B4P6U6   Q28WZ0   Q0E961   B4KM12   A0A0J9RDG6   Q8MSR0   A0A0B4LF97   B4QH00   A0A0Q9XAG8   A0A1A9WAE8   B4MNM9  

Pubmed

19121390    26354079    22118469    24845553    28004739    23537049    + More
20075255    18362917    19820115    26823975    21282665    29403074    20566863    24508170    30249741    21347285    27289101    27129103    25474469    17994087    18057021    25315136    26108605    15632085    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249   

EMBL

BABH01019456    BABH01019457    RSAL01000076    RVE48844.1    NWSH01000423    PCG76498.1    + More
KQ459600    KPI94111.1    AGBW02012218    OWR45427.1    ODYU01000581    SOQ35616.1    KQ460473    KPJ14413.1    NEVH01022647    PNF18341.1    GEBQ01012543    JAT27434.1    KK852818    KDR15727.1    KC713792    AHH29250.1    PNF18338.1    GEZM01053017    JAV74221.1    APGK01053952    KB741239    KB632275    ENN72157.1    ERL91127.1    GEDC01024549    JAS12749.1    KQ971312    EEZ97971.2    KZ288203    PBC33435.1    GDHC01011791    JAQ06838.1    GL763054    EFZ20263.1    PYGN01000072    PSN55301.1    KYB29348.1    DS235047    EEB10961.1    KK107347    EZA52251.1    QOIP01000007    RLU20938.1    LNIX01000008    OXA51130.1    ADTU01024277    ADTU01024278    ADTU01024279    ADTU01024280    ADTU01024281    ADTU01024282    LJIJ01005138    ODM87510.1    KQ981993    KYN30913.1    GDKW01003866    JAI52729.1    GBBI01002982    JAC15730.1    PNF18340.1    ACPB03017125    HACA01014052    CDW31413.1    CH902619    EDV37205.1    CH954179    EDV55855.2    KQS62502.1    KQS62503.1    UFQT01000187    SSX21343.1    OUUW01000001    SPP73286.1    CH480816    EDW48043.1    JRES01001144    KNC25154.1    CH940648    EDW60351.1    KRF79381.1    KRF79382.1    KRF79383.1    CH479252    EDW38686.1    CM000071    KRT03161.1    CM000158    EDW92023.1    KRK00259.1    EAL26526.2    AE013599    BT150416    AAF58096.2    AAM70967.2    AAO41388.1    AHB32098.1    CH933808    EDW10801.1    CM002911    KMY94103.1    AY118652    AAM50021.1    AHN56266.1    CM000362    EDX07263.1    KMY94101.1    KRG05487.1    CH963848    EDW73718.2   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053268    UP000007151    UP000053240    + More
UP000235965    UP000027135    UP000019118    UP000030742    UP000002358    UP000007266    UP000242457    UP000245037    UP000009046    UP000053097    UP000279307    UP000198287    UP000005205    UP000094527    UP000078541    UP000015103    UP000095300    UP000007801    UP000008711    UP000268350    UP000192221    UP000095301    UP000001292    UP000037069    UP000008792    UP000008744    UP000001819    UP000002282    UP000000803    UP000009192    UP000000304    UP000091820    UP000007798   

PRIDE

H9JNH8    Q0E961    Q8MSR0   

Pfam

PF00209   SNF

Interpro

IPR000175   Na/ntran_symport        + More
IPR037272   SNS_sf       

SUPFAM

SSF161070   SSF161070       

ProteinModelPortal

H9JNH8   A0A3S2NJ33   A0A2A4JXU6   A0A194PL01   A0A212EVE2   A0A2H1V4B2   + More
A0A194R996   A0A2J7PPT8   A0A1B6LUR6   A0A067QYW6   X2D406   A0A2J7PPR3   A0A1Y1LMR3   N6U0T6   A0A1B6CH68   K7ISJ3   D6WAN6   A0A2A3ENU6   A0A146LFA9   E9IGN2   A0A2P8ZFM0   A0A139WMU5   E0VC55   A0A026W9A5   A0A3L8DM93   A0A226E1G2   A0A158NRR7   A0A1D2M3G4   A0A195ERR2   A0A0P4VFJ6   A0A023F301   A0A2J7PPS4   T1HPL6   A0A0K2TZK3   A0A1I8NVR6   A0A1I8NVR9   B3MC18   B3NQ08   A0A0Q5VM51   A0A336LXG1   A0A3B0JJ74   A0A1W4V0D0   A0A1W4V0S0   A0A1I8MZF8   B4HSG5   A0A1I8MZF5   A0A1I8MZF7   A0A0L0C114   B4LQ28   A0A0Q9WAY1   B4HBE4   A0A0R3NQC6   B4P6U6   Q28WZ0   Q0E961   B4KM12   A0A0J9RDG6   Q8MSR0   A0A0B4LF97   B4QH00   A0A0Q9XAG8   A0A1A9WAE8   B4MNM9  

KEGG

101737934    K05336 solute carrier family 6 (neurotransmitter transporter), invertebrate | (RefSeq) uncharacteriz

GO

GO:0016021   GO:0005328   GO:0015293   GO:0005886   GO:0007464   GO:0005326   GO:0006836   GO:0051276   GO:0016491   GO:0016620   GO:0016787   GO:0003676   GO:0015930  

PANTHER

PTHR11616  

Length:

408

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

105.83664

Exp number, first 60 AAs:

36.70108

Total prob of N-in:

0.28403

POSSIBLE N-term signal

sequence

outside

1  -  12

TMhelix

13  -  35

inside

36  -  54

TMhelix

55  -  77

outside

78  -  81

TMhelix

82  -  104

inside

105  -  123

TMhelix

124  -  146

outside

147  -  408

 

 

Pi

332.573752

Theta

184.186874

Tajima's D

2.023811

CLR

0.166603

CSRT

0.891005449727514

Interpretation

Uncertain