SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13655
Pre Gene Modal
BGIBMGA011077
Annotation
PREDICTED:_circadian_clock-controlled_protein-like_[Amyelois_transitella]
Location in the cell
Extracellular   Reliability : 2.211
 

Sequence

CDS
ATGCTTACTACACTGTTACTATTATCATGTGCGTTTTTCAGTGCTTCGGGTGAAAAAGAAAAATGCAAAATTACAGACAAGCAATGCATTGTTTTGTTCAGCAATTCTGTCTTTGAAAAAATATTCGAAGCTGATAATAATCAAAACATCGATCCCATGTATATAGAGTTCGTAGAAGGAAATTTTCCTGACCGGAAGATCAAGTTAACAAATATTTCCATGACTGGCTATAATACCTGTAAAGTCTTCGATTTATATTGGGACATAGAACAATCTTTATTGAACTTAGAATTTTACTGTTTGGGTTTTTCGATTAATGGACAATATGAGATGTCTGGACTGGCTGTAACAGTTCCTACTGAAGAAAAAGGAAAATTTACTATTGATACAAAAAGCTACAAGTTAATGCCGAACACAACATTTGAACTTGTGCAAACTGTTGGGAATAAAACTCTTTTTCATCTTAAGGACTTCAACGTCAAGGTGTCGCCATTGGAGAAAGTGGCGTTACATTTCACGAATCTTTATAACGGGCAAGAAATACCAAGTGCCAAATTTTTAGCACAAGAGCACTGGAGAAATATTATCTACACTCTTCAAGATAAGTTCGCTTCAACCTGCTTCAAGAATGTATATGTAGCTTTAAATAAAGTATTTACGACAATGCCATTGGAAGAATATTTCGAATTGTAG
Protein
MLTTLLLLSCAFFSASGEKEKCKITDKQCIVLFSNSVFEKIFEADNNQNIDPMYIEFVEGNFPDRKIKLTNISMTGYNTCKVFDLYWDIEQSLLNLEFYCLGFSINGQYEMSGLAVTVPTEEKGKFTIDTKSYKLMPNTTFELVQTVGNKTLFHLKDFNVKVSPLEKVALHFTNLYNGQEIPSAKFLAQEHWRNIIYTLQDKFASTCFKNVYVALNKVFTTMPLEEYFEL

Summary

EMBL
EZ407142    ACX53704.1    RBVL01000111    RKO12019.1    RBVL01000071    RKO12462.1    + More
MF196310    ATU07292.1    ODYU01009308    SOQ53635.1    KQ459595    KPI95817.1    AGBW02010899    OWR47538.1    KQ460473    KPJ14396.1    ODYU01000156    SOQ34451.1    GDQN01000386    JAT90668.1    GCVX01000230    JAI18000.1    NWSH01000992    PCG73195.1    KZ149950    PZC76676.1    RBVL01000123    RKO11885.1    RSAL01000004    RVE54626.1    NWSH01001136    PCG72449.1    AY231292    AAO65575.1    KT443975    ANC68523.1    AB508818    BAH79158.1    JTDY01001270    KOB74335.1    EZ407269    ACX53824.1    EZ407156    ACX53718.1    EZ407252    ACX53809.1    MF196302    ATU07284.1    PCG73196.1    KZ149964    PZC76238.1    MF196312    ATU07294.1    ODYU01001173    SOQ37016.1    EZ407239    ACX53796.1    ODYU01006397    SOQ48206.1    OWR47537.1    MF196300    ATU07282.1    BABH01039669    BABH01039670    AB196702    AB383136    BAE43410.1    BAH97092.1    GCVX01000235    JAI17995.1    KX585301    ARO70194.1    AK401870    BAM18492.1    KPI95934.1    AB383144    BAH97100.1    AB196700    BAE43408.1    ODYU01001950    SOQ38859.1    KT443977    ANC68525.1    RSAL01000076    RVE48836.1    AB196703    BAE43411.1    AB383142    BAH97098.1    NEVH01011194    PNF31891.1    RBVL01000055    RKO12710.1    ODYU01007918    SOQ51114.1    KT261655    MF196311    ALJ30196.1    ATU07293.1    AGBW02009605    OWR50341.1    PNF31889.1    KT261667    MF196309    ALJ30208.1    ATU07291.1    OUUW01000008    SPP83812.1    PZC76677.1    ODYU01009376    SOQ53760.1    GDQN01009976    JAT81078.1    KP729044    AKT26502.1    PNF31890.1    KQ460313    KPJ16090.1    KX655906    AOG12855.1    GCVX01000231    JAI17999.1    JXJN01004857    AK417740    BAN20955.1    MF196296    ATU07278.1    SPP83813.1    OWR50342.1    CH479185    EDW38479.1    AK402595    BAM19217.1    GCVX01000229    JAI18001.1    GBHO01010986    GBRD01003379    GDHC01008731    JAG32618.1    JAG62442.1    JAQ09898.1    ODYU01002699    SOQ40537.1    PCG72453.1    KQ460202    KPJ17177.1    CM000160    EDW98794.1    GCVX01000233    JAI17997.1    KY419208    AVC68634.1    EU834741    ACF39402.1    CM000070    EAL29143.3    ODYU01004766    SOQ44995.1    CM000364    EDX14378.1    KQ459299    KPJ01910.1    ODYU01012978    SOQ59553.1    KPJ14397.1    GECL01001830    JAP04294.1    MF196305    ATU07287.1    GEDC01018554    JAS18744.1    PZC76239.1    BABH01015366    CH954182    EDV53711.1    ACPB03008063    AK401031    BAM17653.1    GEBQ01005628    JAT34349.1   
Pfam
PF06585   JHBP
Interpro
IPR010562   Haemolymph_juvenile_hormone-bd        + More
IPR038606   To_sf       
Gene 3D
PDB
4G0S     E-value=0.0157624,     Score=87

Ontologies

GO

Topology

SignalP
Position:   1 - 17,         Likelihood:  0.985776
 
 
Length:
230
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00308000000000001
Exp number, first 60 AAs:
0.0006
Total prob of N-in:
0.00826
outside
1  -  230
 
 

Population Genetic Test Statistics

Pi
165.366573
Theta
156.533042
Tajima's D
0.334277
CLR
1.049504
CSRT
0.467576621168942
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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