SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13645  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA011039
Annotation
PREDICTED:_structural_maintenance_of_chromosomes_protein_3_[Amyelois_transitella]
Full name
Structural maintenance of chromosomes protein      
Location in the cell
Nuclear   Reliability : 2.914
 

Sequence

CDS
ATGCACATAAAACAGGTAATAATCCAAGGATTCAAGAGTTACCGAGAGCAAATTGTTGTAGAGCCCTTTGATAAACGGCATAATGTAGTCGTGGGACGTAATGGTTCAGGGAAGAGTAACTTTTTCCACGCCATTCAATTTGTACTCAGCGATGAATTCTCCCATCTCAGACCTGAGCAGCGGCTGGCCCTACTGCACGAGGGAACTGGCCCTAGAGTCATTTCGGCTTTTGTTGAAATTATATTTGACAACTCTGACAATAGGATACCTATTGAAAAAGATGAGATATTTTTACGACGTGTCATTGGTTCAAAGAAGGATCAGTTCTTCCTCAACAAAAAAGTCGTTCCTCGTTCAGAAGTACTAAACTTGCTTGAGAGTGCTGGGCTTTCTAATTCCAATCCATATTACATTGTGAAACAGGGAAAAATTAATCAAATGGCCATAGCTCCTGATTCTCACAGACTGAAACTTCTAAGAGAAGTAGCTGGTACAAGGGTTTACGACGAAAGGAGGGAGGAGTCTGTAGCTATACTTAAAGAGACTGTTGGAAAGGTAGAAAAAATAAATGAATTCCTCCAAACCATTGAAGAACGTTTGAAAACTTTAGAAGAGGAGAAGGAAGAATTAAAAGAGTACCAGAAATGGGACAGAGCTAGACGCGTTCTAGAATTTATTATCCATGACACTGAACACAAGGAGAACAAAAGGAAACTGGAAGAGTTGGAGAAACTGAGATCGAACAGTGGAAAAGAACAACAACATTATGCAGATTTGGTACGAGAAGCTCAAGAACACGTGAGGGAAGCTAATAGGAAGCTGAAGGAAGCGCGCAAGGACGTGGCGGCTGCAAGAGAGGAAAAGGACATCCTGTCCACCGAACAACAACAGCTGCTGAAGGAAAAAACGAAATTAGAACTTGCCATAAAGGACTTGACCGACGACGTTGACGGCGACAACAAATCGAAGGAACGCGCTGAAGCCGAATTGGAACGCTTAAGACAGCAAATATCAGAGAAAGAACGCGAGTTAGAAGAACTGAAGCCGAAATATGAGGAGATGAAGGCTCGTGAAGAGGAATGTACTAGAGCGCTCTCTCTCAACCAGCAGAAGAGACAGGAGTTGTACGCCAAGCAGGGGAGAGGCACGCAGTTCACCTCCAAGCAGGACCGGGACAGATGGATCGAGAAGGAGCTCAAATCACTGAACAAGCAATTGAAAGACAAGAAAGATCACGAGAGTAAGTTACGCGAGGATCTAAGGCGCGACGCCAACAAACTGACAGAACTGGAGAAGAGAATCGAAGAGACCACGAAAGAGATGGAGAGGCAGCGCGTGGCCATCGACGAGCACAACAAGCAGTATTACGAATGTAAGAAGAAGAAGGACCAAGAACAGAGCGCTAGGAACGAACTGTGGCGCAAAGAGACTTCATTGACACAAAATTTGTCGTCACTAAAAGACGACTTGGCAAAGGCCGATCAGGCGTTACGATCCATGGCGGGAAAGCCAATTCTGAACGGTCGAGACAGTGTCCGCAAGGTGCTGGAGACTTTCCAGGAGCGCGGAGGCGACTGGGCCAAAATAGCCACCCAGTACTACGGGCCCGTCATCGAGAACTTCACCTGCGATAAGACTATCTACACGGCCGTCGAGGTAACAGCGGGCAACAGACTGTTCCATCACATCGTAGAATCCGACACTGTAGGAACGAAGATCCTCAAAGAGATGAACAGACAGAACCTACCCGGAGAAGTCACCTTCATGCCCTTGAACCGACTGCAAGTACGAGATATGGTTTATCCCAATGACAATAACGCAATAGCGATGGTGCAAAAACTCAAATATGATCCGAAATACGCGAAAGCAATGAAGTACATATTCGGGAAGACGCTCATCTGCAGGAATCTCGAGTGCGCCACGGAACTGGGGAAGCAGTTCCATCTGGATTGTGTCACTTTAGAAGGAGATCAGGTATCGTCGAAGGGCTCTCTGACGGGTGGTTACTTTAACCAGTCGCGCTCTCGTCTGGAAATGCAGAAGACCCGCTCCGAGCTGATGGAGCAGATCACGACCCTCGACCTGGAGCTCAGCACGCTGCGGCAGGAACTCAACAAGACTGAGGCGAGCATCAACAGCATCGTGTCCGAGATGCAGAGGACTGAGACTAAACAAGGGAAAGCAAAGGATATTTTCGACAAAGTCAAAGCAGACATTCGTCTGATGAAAGAAGAGTTAGCTTCCATAGAAAGGTTCAGAGGACCTAAGGAGAGATCTTTAGCGCAGTGCAGGTCCAGCCTGGAAGCCATGCAGGCTACCAAAGAAGGATTGGAATCTGAACTTCATCAGGAGTTGATGGAGCAACTATCGACCGCGGACCAAGGTAAAGTGGACGAACTGAACGACGCGATTCGCCGCCTCACCCTCGAGAACAAGGAAGCGTTCAGCGCCAGAATGAATCTCGAAGCCACAAAGAACAAACTAGAGAATCTGCTGACCAACAATTTGATTCGGTTCGTTCATCGTTCGTTCGATAGTTTGTGTAAAGTTACCGAATTTAAACCTCTAAAAATAATATATTAG
Protein
MHIKQVIIQGFKSYREQIVVEPFDKRHNVVVGRNGSGKSNFFHAIQFVLSDEFSHLRPEQRLALLHEGTGPRVISAFVEIIFDNSDNRIPIEKDEIFLRRVIGSKKDQFFLNKKVVPRSEVLNLLESAGLSNSNPYYIVKQGKINQMAIAPDSHRLKLLREVAGTRVYDERREESVAILKETVGKVEKINEFLQTIEERLKTLEEEKEELKEYQKWDRARRVLEFIIHDTEHKENKRKLEELEKLRSNSGKEQQHYADLVREAQEHVREANRKLKEARKDVAAAREEKDILSTEQQQLLKEKTKLELAIKDLTDDVDGDNKSKERAEAELERLRQQISEKERELEELKPKYEEMKAREEECTRALSLNQQKRQELYAKQGRGTQFTSKQDRDRWIEKELKSLNKQLKDKKDHESKLREDLRRDANKLTELEKRIEETTKEMERQRVAIDEHNKQYYECKKKKDQEQSARNELWRKETSLTQNLSSLKDDLAKADQALRSMAGKPILNGRDSVRKVLETFQERGGDWAKIATQYYGPVIENFTCDKTIYTAVEVTAGNRLFHHIVESDTVGTKILKEMNRQNLPGEVTFMPLNRLQVRDMVYPNDNNAIAMVQKLKYDPKYAKAMKYIFGKTLICRNLECATELGKQFHLDCVTLEGDQVSSKGSLTGGYFNQSRSRLEMQKTRSELMEQITTLDLELSTLRQELNKTEASINSIVSEMQRTETKQGKAKDIFDKVKADIRLMKEELASIERFRGPKERSLAQCRSSLEAMQATKEGLESELHQELMEQLSTADQGKVDELNDAIRRLTLENKEAFSARMNLEATKNKLENLLTNNLIRFVHRSFDSLCKVTEFKPLKIIY

Summary

Similarity
Belongs to the SMC family.
Feature
chain  Structural maintenance of chromosomes protein
EMBL
BABH01019345    NWSH01001703    PCG70393.1    KZ149988    PZC75644.1    AGBW02014225    + More
OWR42055.1    ODYU01001305    SOQ37330.1    GEZM01038226    JAV81709.1    KQ971381    EEZ97230.1    NEVH01023957    PNF17803.1    GFDL01001218    JAV33827.1    CH477414    EAT41403.1    UFQS01001145    UFQT01001092    UFQT01001145    SSX09245.1    SSX28872.1    ATLV01015219    KE525003    KFB40241.1    GGFM01002296    MBW23047.1    AXCM01000417    AXCN02000886    GGFK01005845    MBW39166.1    ADMH02001377    ETN62709.1    AJWK01021040    AJ535205    AAAB01008960    CAD59405.1    EAA11190.3    APCN01005875    KK852811    KDR15942.1    GBYB01014617    JAG84384.1    MF433018    ATL75369.1    GBGD01000168    JAC88721.1    GFTR01008664    JAW07762.1    KQ981387    KYN42041.1    KQ980910    KYN11475.1    KQ982294    KYQ58409.1    GL888183    EGI65639.1    GEDC01007431    JAS29867.1    GL451103    EFN80015.1    GBHO01030949    GBHO01006689    GDHC01020929    GDHC01000271    JAG12655.1    JAG36915.1    JAP97699.1    JAQ18358.1    GBRD01011092    JAG54732.1    KZ288282    PBC29520.1    GEBQ01028996    JAT10981.1    CCAG010000239    JXJN01001549    GL439791    EFN66756.1    LBMM01000789    KMQ97485.1    KQ435727    KOX77869.1    GAMC01003042    JAC03514.1    GL768061    EFZ12663.1    GBXI01003732    JAD10560.1    GDHF01012022    JAI40292.1    GAKP01002785    JAC56167.1    GAKP01002784    JAC56168.1    BT132900    AEV53908.1    CM000162    EDX01933.1    ACPB03022213    CH902622    EDV34736.2    CH964239    EDW81836.1    AE014298    AAF48625.2    U30492    AAC47078.1    CH954180    EDV46383.1    KQ414584    KOC70556.1    BT023768    AAZ41776.1    CP012528    ALC49272.1    CH933814    EDW05621.1    CH379064    EAL31729.2    APGK01053201    KB741222    KB631665    ENN72401.1    ERL85147.1    OUUW01000003    SPP78800.1    ABLF02028811    CH916376    EDV95264.1    HACA01021466    CDW38827.1    GGMS01007413    MBY76616.1    DS235845    EEB18387.1    GFXV01000520    MBW12325.1    KQ976973    KYN06753.1    CH940651    EDW65151.2    ABLF02022093    GDIQ01121764    JAL29962.1    GDIQ01125970    JAL25756.1    GDIQ01121763    JAL29963.1    KK107063    EZA60968.1    GDIQ01127562    JAL24164.1    GDIP01053038    JAM50677.1    GGMS01017520    MBY86723.1   
Pfam
PF02463   SMC_N        + More
PF06470   SMC_hinge
Interpro
IPR003395   RecF/RecN/SMC_N        + More
IPR010935   SMC_hinge       
IPR024704   SMC       
IPR027417   P-loop_NTPase       
IPR036277   SMC_hinge_sf       
IPR041741   SMC3_ABC_euk       
SUPFAM
SSF52540   SSF52540        + More
SSF75553   SSF75553       
PDB
2WD5     E-value=3.0295e-61,     Score=599

Ontologies

Topology

Subcellular location
Nucleus  
Length:
860
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00153
Exp number, first 60 AAs:
0.00057
Total prob of N-in:
0.00012
outside
1  -  860
 
 

Population Genetic Test Statistics

Pi
229.851665
Theta
176.767483
Tajima's D
1.066433
CLR
0.348423
CSRT
0.676766161691915
Interpretation
Uncertain
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