Gene

KWMTBOMO13644  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011039

Annotation

PREDICTED:_structural_maintenance_of_chromosomes_protein_3_[Amyelois_transitella]

Location

Bomo_Chr23(-):4073110-4075168      View in EpiBrowser

Full name

Structural maintenance of chromosomes protein      

Location in the cell

Nuclear   Reliability : 2.293

CDS

ATGTTTCCGAAGCGAAGCGAGGGCGGACGTAAAGACGAATTAGTACAAGCTCTACAAGAGATCTCTGTTGAAGATCGGAAACGTCGTCTCGCTAACAGCAAAACCGATCTGTCCGCCACCGAGAAGCGCATCAAGCAGATCAACAAAGAACTAGAAGAGGTCGAGAGGAAAGTGCAAGCCGCCGTCAAAAACGAGAAGGCTCTCAAATTGGAGTTAGATAAATGGAGGAATAAAGAAAAAGAAGCTCAAGATAAAATGGAGGAGGACGCTAAGGGTCTAGAAAAGATGGCTTCCAAAGAAGTGTTGCTACAGGACAAAATTCAAGAGTCGCTCGATAAAATAGCAGCCCTGGGCACACTGCCCAACGCACCCGAACTACACGCTAAGTACCAGAAAATGTCTCTGAAACAGCTCTTCAAAGAGCTGGAGAAAGCCAATCAACATCTCAAGAAGTATAATCATGTCAACAAAAAGGCCTTGGACCAGTTCATTAGTTTCTCGGAGCAGAAGGAGAAACTGTATAAGAGGAAAGAAGAACTCGATGTTGGGTGA

Protein

MFPKRSEGGRKDELVQALQEISVEDRKRRLANSKTDLSATEKRIKQINKELEEVERKVQAAVKNEKALKLELDKWRNKEKEAQDKMEEDAKGLEKMASKEVLLQDKIQESLDKIAALGTLPNAPELHAKYQKMSLKQLFKELEKANQHLKKYNHVNKKALDQFISFSEQKEKLYKRKEELDVG

Similarity

Belongs to the SMC family.

Feature

chain  Structural maintenance of chromosomes protein

Uniprot

H9JND6   A0A2H1V902   A0A2A4JG49   A0A2W1BPW1   S4NN78   A0A194R972   + More
A0A3S2NVU4   A0A212EKQ6   A0A194PR91   A0A182H9P5   A0A182H3K6   Q174C2   A0A182LL58   A0A182MHM9   A0A182R5J8   A0A182WTU4   Q8I952   A0A182HI41   A0A182WC99   A0A182V9Z7   A0A182ULJ0   A0A182PET4   A0A182JZ96   A0A2J7PN88   A0A182QYS1   A0A1Q3G1Y3   A0A182YLV7   A0A182NIF4   A0A0K8WH44   A0A1A9W229   A0A084VQJ7   W8C2R6   A0A182FJH0   A0A2J7PN92   A0A182J5N9   A0A2M4AEF9   A0A2J7PN87   W5JIT8   A0A0K8VN34   A0A034WPC9   A0A2M3Z3F4   A0A182FK52   B4L846   A0A2J7PN85   A0A1B0G8C8   A0A1A9XXS4   A0A1A9VBM6   A0A1B0APR8   A0A1A9Z5U2   B4M2X6   B4JWY8   A0A1I8PG28   A0A067R1S0   A0A1W4VJZ6   Q29HM9   B3NVJ1   Q8IR12   B4R5V1   A0A3B0JTJ2   B4NDL4   B4IF96   H0RNH8   B4PXU7   Q9VXE9   Q494K8   Q24098   B3MSI1   A0A336KXB2   A0A1B6HDC7   T1PHD8   A0A1I8NHL7   A0A0M4EVH5   A0A069DXM4   A0A1B6J924   A0A0V0G5H6   T1HYT8   A0A224XGP7   T1GMH3   A0A069DY14   A0A0K8SN12   A0A0A9X6G6   A0A0L0CFK5   A0A0C9RMH9   A0A291S6Y0   A0A3L8DT09   A0A026WYQ5   A0A154P6G5   A0A088AHL5   A0A2A3ECT5   A0A0L7RIJ8   E9J3C0   A0A1B6ER77   A0A1J1HMB5   A0A0M9A885   E2BWB1   A0A158NIE6   F4WJI3   A0A195FNQ0   A0A151XDI3   A0A151IVP0  

Pubmed

19121390    28756777    23622113    26354079    22118469    26483478    + More
17510324    20966253    12364791    14660695    14747013    17210077    25244985    24438588    24495485    20920257    23761445    25348373    17994087    24845553    15632085    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    8849894    25315136    26334808    25401762    26823975    26108605    28992199    30249741    24508170    21282665    20798317    21347285    21719571   

EMBL

BABH01019345    ODYU01001305    SOQ37330.1    NWSH01001703    PCG70393.1    KZ149988    + More
PZC75644.1    GAIX01014051    JAA78509.1    KQ460473    KPJ14388.1    RSAL01000146    RVE45906.1    AGBW02014225    OWR42055.1    KQ459595    KPI95827.1    JXUM01121234    KQ566477    KXJ70102.1    JXUM01107617    KQ565158    KXJ71275.1    CH477414    EAT41403.1    AXCM01000417    AJ535205    AAAB01008960    CAD59405.1    EAA11190.3    APCN01005875    NEVH01023957    PNF17800.1    AXCN02000886    GFDL01001218    JAV33827.1    GDHF01031659    GDHF01001838    JAI20655.1    JAI50476.1    ATLV01015219    KE525003    KFB40241.1    GAMC01003042    JAC03514.1    PNF17801.1    GGFK01005845    MBW39166.1    PNF17802.1    ADMH02001377    ETN62709.1    GDHF01012022    JAI40292.1    GAKP01002785    JAC56167.1    GGFM01002296    MBW23047.1    CH933814    EDW05621.1    PNF17803.1    CCAG010000239    JXJN01001549    CH940651    EDW65151.2    CH916376    EDV95264.1    KK852811    KDR15942.1    CH379064    EAL31729.2    CH954180    EDV46383.1    BT029133    ABJ17066.1    CM000366    EDX18101.1    OUUW01000003    SPP78800.1    CH964239    EDW81836.1    CH480832    EDW46150.1    BT132900    AEV53908.1    CM000162    EDX01933.1    AE014298    AAF48625.2    BT023768    AAZ41776.1    U30492    AAC47078.1    CH902622    EDV34736.2    UFQS01001145    UFQT01001092    UFQT01001145    SSX09245.1    SSX28872.1    GECU01035071    JAS72635.1    KA648094    AFP62723.1    CP012528    ALC49272.1    GBGD01000437    JAC88452.1    GECU01011999    JAS95707.1    GECL01002827    JAP03297.1    ACPB03022213    GFTR01008664    JAW07762.1    CAQQ02150384    CAQQ02150385    GBGD01000168    JAC88721.1    GBRD01011092    JAG54732.1    GBHO01030949    GBHO01006689    GDHC01020929    GDHC01000271    JAG12655.1    JAG36915.1    JAP97699.1    JAQ18358.1    JRES01000476    KNC30982.1    GBYB01014617    JAG84384.1    MF433018    ATL75369.1    QOIP01000005    RLU23029.1    KK107063    EZA60968.1    KQ434826    KZC07413.1    KZ288282    PBC29520.1    KQ414584    KOC70556.1    GL768061    EFZ12663.1    GECZ01029298    JAS40471.1    CVRI01000004    CRK87369.1    KQ435727    KOX77869.1    GL451103    EFN80015.1    ADTU01016743    ADTU01016744    GL888183    EGI65639.1    KQ981387    KYN42041.1    KQ982294    KYQ58409.1    KQ980910    KYN11475.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000283053    UP000007151    UP000053268    + More
UP000069940    UP000249989    UP000008820    UP000075882    UP000075883    UP000075900    UP000076407    UP000007062    UP000075840    UP000075920    UP000075903    UP000075902    UP000075885    UP000075881    UP000235965    UP000075886    UP000076408    UP000075884    UP000091820    UP000030765    UP000069272    UP000075880    UP000000673    UP000009192    UP000092444    UP000092443    UP000078200    UP000092460    UP000092445    UP000008792    UP000001070    UP000095300    UP000027135    UP000192221    UP000001819    UP000008711    UP000000304    UP000268350    UP000007798    UP000001292    UP000002282    UP000000803    UP000007801    UP000095301    UP000092553    UP000015103    UP000015102    UP000037069    UP000279307    UP000053097    UP000076502    UP000005203    UP000242457    UP000053825    UP000183832    UP000053105    UP000008237    UP000005205    UP000007755    UP000078541    UP000075809    UP000078492   

PRIDE

H9JND6    Q8IR12    H0RNH8    Q9VXE9    Q494K8    Q24098    + More

Pfam

PF02463   SMC_N        + More
PF06470   SMC_hinge
PF07716   bZIP_2
PF00646   F-box

Interpro

IPR003395   RecF/RecN/SMC_N        + More
IPR010935   SMC_hinge       
IPR024704   SMC       
IPR027417   P-loop_NTPase       
IPR036277   SMC_hinge_sf       
IPR041741   SMC3_ABC_euk       
IPR004827   bZIP       
IPR001315   CARD       
IPR036047   F-box-like_dom_sf       
IPR001810   F-box_dom       

SUPFAM

SSF52540   SSF52540        + More
SSF75553   SSF75553       
SSF81383   SSF81383       

CDD

cd03272  ABC_SMC3_euk

ProteinModelPortal

H9JND6   A0A2H1V902   A0A2A4JG49   A0A2W1BPW1   S4NN78   A0A194R972   + More
A0A3S2NVU4   A0A212EKQ6   A0A194PR91   A0A182H9P5   A0A182H3K6   Q174C2   A0A182LL58   A0A182MHM9   A0A182R5J8   A0A182WTU4   Q8I952   A0A182HI41   A0A182WC99   A0A182V9Z7   A0A182ULJ0   A0A182PET4   A0A182JZ96   A0A2J7PN88   A0A182QYS1   A0A1Q3G1Y3   A0A182YLV7   A0A182NIF4   A0A0K8WH44   A0A1A9W229   A0A084VQJ7   W8C2R6   A0A182FJH0   A0A2J7PN92   A0A182J5N9   A0A2M4AEF9   A0A2J7PN87   W5JIT8   A0A0K8VN34   A0A034WPC9   A0A2M3Z3F4   A0A182FK52   B4L846   A0A2J7PN85   A0A1B0G8C8   A0A1A9XXS4   A0A1A9VBM6   A0A1B0APR8   A0A1A9Z5U2   B4M2X6   B4JWY8   A0A1I8PG28   A0A067R1S0   A0A1W4VJZ6   Q29HM9   B3NVJ1   Q8IR12   B4R5V1   A0A3B0JTJ2   B4NDL4   B4IF96   H0RNH8   B4PXU7   Q9VXE9   Q494K8   Q24098   B3MSI1   A0A336KXB2   A0A1B6HDC7   T1PHD8   A0A1I8NHL7   A0A0M4EVH5   A0A069DXM4   A0A1B6J924   A0A0V0G5H6   T1HYT8   A0A224XGP7   T1GMH3   A0A069DY14   A0A0K8SN12   A0A0A9X6G6   A0A0L0CFK5   A0A0C9RMH9   A0A291S6Y0   A0A3L8DT09   A0A026WYQ5   A0A154P6G5   A0A088AHL5   A0A2A3ECT5   A0A0L7RIJ8   E9J3C0   A0A1B6ER77   A0A1J1HMB5   A0A0M9A885   E2BWB1   A0A158NIE6   F4WJI3   A0A195FNQ0   A0A151XDI3   A0A151IVP0  

KEGG

101736252    K06669 structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6) | (RefSeq) struct

GO

GO:0005524   GO:0051276   GO:0005694   GO:0005634   GO:0001737   GO:0008278   GO:0007476   GO:0003682   GO:0046982   GO:0003700   GO:0042981  

Subcellular location

Nucleus  

Length:

183

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08109

outside

1  -  183

 

 

Pi

247.277854

Theta

165.864518

Tajima's D

1.513899

CLR

0

CSRT

0.791360431978401

Interpretation

Uncertain