Gene

KWMTBOMO13641  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011040

Annotation

Structural_maintenance_of_chromosomes_protein_3_[Papilio_machaon]

Location

Bomo_Chr23(-):4062391-4065548      View in EpiBrowser

Full name

Structural maintenance of chromosomes protein      

Location in the cell

Cytoplasmic   Reliability : 2.493

CDS

ATGTCTTTTTTAGAACGAAATTCCTTATTGGACGATGCGGAGGTGTACCCTAACCGTGGCGAGAAAATCCGTGAACTCATAGAGACGTTAGAACACAGAAAATTGGAAGCGATACAGTTTACGTTCAAACAAGTCACGAAGAATTTCTCGGAGGTCTTCAAAAAGTTAGTACCTCAAGGGAGGGGCAGTCTCATCATGAGGGTAGCCACCGACGAAGTGCAGGATGTTAATCCAGAGCGCGCCAATGCAGACCAGTTCGCTGGGGTCGGCATTAAAGTGTCGTTCACCGGCGGCGAGGGGGACATGCGGGAGATGAATCAGTTGTCTGGCGGACAGAAGTCCCTGGTGGCGCTTGCGCTGATATTCGCCATACAGAAGTGCGACCCCGCGCCCTTCTATCTGTTCGACGAAATCGATCAGGCTCTGGACGCGCAACACCGTAAAGCGATAGCGAACATGATCCACGAGCTGTCGTCGTCGGCGCAGTTCATCACGACGACCTTCCGCCCCGAGCTGCTGGAGCACGCGCACAAGTTCTACGGGGTCAAGTTCAGGAACAAAGTGTCTCACGTCGAATGCGTCACACAGGAGGAGGCGAGGGACTTCGTCGAGGACAGCGCCACACACGCTTAG

Protein

MSFLERNSLLDDAEVYPNRGEKIRELIETLEHRKLEAIQFTFKQVTKNFSEVFKKLVPQGRGSLIMRVATDEVQDVNPERANADQFAGVGIKVSFTGGEGDMREMNQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAIANMIHELSSSAQFITTTFRPELLEHAHKFYGVKFRNKVSHVECVTQEEARDFVEDSATHA

Similarity

Belongs to the SMC family.

Feature

chain  Structural maintenance of chromosomes protein

Uniprot

A0A194REM7   S4NN78   A0A2H1V902   A0A212EKQ6   A0A3S2NVU4   A0A194PR91   + More
A0A2W1BPW1   A0A2A4JG49   V5GW21   D2A538   A0A1Y1M9N8   B0XJV2   A0A1A9Z0R7   A0A182H9P5   A0A182H3K6   D6X4W0   A0A0A1XIU3   A0A158NIE6   T1PHD8   A0A0K8WH44   A0A151XDI3   A0A2A3ECT5   A0A154P6G5   A0A1Y1M794   F4WJI3   E9J3C0   A0A151IVP0   A0A195FNQ0   A0A1B6ES04   A0A1B6KKQ5   A0A088AHL5   A0A3L8DT09   A0A026WYQ5   A0A0L0CFK5   A0A0J7NYK5   A0A1I8NHL7   N6TVH3   E2AIG6   Q174C2   W8C2R6   A0A0M9A885   A0A034WPC9   K7J192   A0A1Q3G1Y3   A0A1B0CNW5   A0A1B6BYX4   A0A1B0G8C8   A0A1A9VBM6   A0A1A9Z5U2   A0A1A9XXS4   A0A1B0APR8   E2BWB1   A0A0C9RMH9   A0A1I8PG28   A0A291S6Y0   A0A1B6HDC7   A0A0B7A781   A0A1A9W229   Q8IR12   A0A1W4VJZ6   A0A2J7PN88   A0A0P4WDU2   B4JWY8   B4PXU7   B3NVJ1   B4L846   Q494K8   Q9VXE9   H0RNH8   B4M2X6   B4IF96   B3MSI1   A0A3B0JTJ2   A0A1B6J924   Q29HM9   A0A0M4EVH5   Q24098   A0A182J5N9   E0VYD1   A0A084VQJ7   B4NDL4   A0A3S2PH45   Q765Q5   A0A182QYS1   A0A182NIF4   W5JIT8   A0A087TXT1   A0A182FK52   A0A2J7PN92   A0A182WC99   A0A182PET4   A0A182MHM9   A0A182YLV7   Q8I952   A0A182HI41   A0A182ULJ0   A0A182WTU4   A0A182V9Z7   A0A182JZ96  

Pubmed

26354079    23622113    22118469    28756777    18362917    19820115    + More
28004739    26483478    25830018    21347285    21719571    21282665    30249741    24508170    26108605    25315136    23537049    20798317    17510324    24495485    25348373    20075255    28992199    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    15632085    8849894    20566863    24438588    15261826    20920257    23761445    25244985    12364791    14660695    14747013    17210077   

EMBL

KQ460473    KPJ14386.1    GAIX01014051    JAA78509.1    ODYU01001305    SOQ37330.1    + More
AGBW02014225    OWR42055.1    RSAL01000146    RVE45906.1    KQ459595    KPI95827.1    KZ149988    PZC75644.1    NWSH01001703    PCG70393.1    GALX01000107    JAB68359.1    KQ971361    EFA05310.1    GEZM01038227    JAV81708.1    DS233619    EDS30797.1    JXUM01121234    KQ566477    KXJ70102.1    JXUM01107617    KQ565158    KXJ71275.1    KQ971381    EEZ97230.1    GBXI01003507    JAD10785.1    ADTU01016743    ADTU01016744    KA648094    AFP62723.1    GDHF01031659    GDHF01001838    JAI20655.1    JAI50476.1    KQ982294    KYQ58409.1    KZ288282    PBC29520.1    KQ434826    KZC07413.1    GEZM01038226    JAV81709.1    GL888183    EGI65639.1    GL768061    EFZ12663.1    KQ980910    KYN11475.1    KQ981387    KYN42041.1    GECZ01029079    GECZ01025572    GECZ01012180    JAS40690.1    JAS44197.1    JAS57589.1    GEBQ01027940    JAT12037.1    QOIP01000005    RLU23029.1    KK107063    EZA60968.1    JRES01000476    KNC30982.1    LBMM01000789    KMQ97485.1    APGK01053201    KB741222    KB631665    ENN72401.1    ERL85147.1    GL439791    EFN66756.1    CH477414    EAT41403.1    GAMC01003042    JAC03514.1    KQ435727    KOX77869.1    GAKP01002785    JAC56167.1    GFDL01001218    JAV33827.1    AJWK01021040    GEDC01031079    JAS06219.1    CCAG010000239    JXJN01001549    GL451103    EFN80015.1    GBYB01014617    JAG84384.1    MF433018    ATL75369.1    GECU01035071    JAS72635.1    HACG01029622    CEK76487.1    BT029133    ABJ17066.1    NEVH01023957    PNF17800.1    GDRN01045212    JAI66878.1    CH916376    EDV95264.1    CM000162    EDX01933.1    CH954180    EDV46383.1    CH933814    EDW05621.1    BT023768    AAZ41776.1    AE014298    AAF48625.2    BT132900    AEV53908.1    CH940651    EDW65151.2    CH480832    EDW46150.1    CH902622    EDV34736.2    OUUW01000003    SPP78800.1    GECU01011999    JAS95707.1    CH379064    EAL31729.2    CP012528    ALC49272.1    U30492    AAC47078.1    DS235845    EEB18387.1    ATLV01015219    KE525003    KFB40241.1    CH964239    EDW81836.1    CM012437    RVE75639.1    AB115698    BAD08303.1    AXCN02000886    ADMH02001377    ETN62709.1    KK117242    KFM69920.1    PNF17801.1    AXCM01000417    AJ535205    AAAB01008960    CAD59405.1    EAA11190.3    APCN01005875   

Proteomes

UP000053240    UP000007151    UP000283053    UP000053268    UP000218220    UP000007266    + More
UP000002320    UP000092445    UP000069940    UP000249989    UP000005205    UP000075809    UP000242457    UP000076502    UP000007755    UP000078492    UP000078541    UP000005203    UP000279307    UP000053097    UP000037069    UP000036403    UP000095301    UP000019118    UP000030742    UP000000311    UP000008820    UP000053105    UP000002358    UP000092461    UP000092444    UP000078200    UP000092443    UP000092460    UP000008237    UP000095300    UP000091820    UP000192221    UP000235965    UP000001070    UP000002282    UP000008711    UP000009192    UP000000803    UP000008792    UP000001292    UP000007801    UP000268350    UP000001819    UP000092553    UP000075880    UP000009046    UP000030765    UP000007798    UP000075886    UP000075884    UP000000673    UP000054359    UP000069272    UP000075920    UP000075885    UP000075883    UP000076408    UP000007062    UP000075840    UP000075902    UP000076407    UP000075903    UP000075881   

PRIDE

Q8IR12    Q494K8    Q9VXE9    H0RNH8    Q24098   

Pfam

PF02463   SMC_N        + More
PF06470   SMC_hinge

Interpro

IPR003395   RecF/RecN/SMC_N        + More
IPR027417   P-loop_NTPase       
IPR010935   SMC_hinge       
IPR036277   SMC_hinge_sf       
IPR024704   SMC       
IPR041741   SMC3_ABC_euk       

SUPFAM

SSF52540   SSF52540        + More
SSF75553   SSF75553       

CDD

cd03272  ABC_SMC3_euk

ProteinModelPortal

A0A194REM7   S4NN78   A0A2H1V902   A0A212EKQ6   A0A3S2NVU4   A0A194PR91   + More
A0A2W1BPW1   A0A2A4JG49   V5GW21   D2A538   A0A1Y1M9N8   B0XJV2   A0A1A9Z0R7   A0A182H9P5   A0A182H3K6   D6X4W0   A0A0A1XIU3   A0A158NIE6   T1PHD8   A0A0K8WH44   A0A151XDI3   A0A2A3ECT5   A0A154P6G5   A0A1Y1M794   F4WJI3   E9J3C0   A0A151IVP0   A0A195FNQ0   A0A1B6ES04   A0A1B6KKQ5   A0A088AHL5   A0A3L8DT09   A0A026WYQ5   A0A0L0CFK5   A0A0J7NYK5   A0A1I8NHL7   N6TVH3   E2AIG6   Q174C2   W8C2R6   A0A0M9A885   A0A034WPC9   K7J192   A0A1Q3G1Y3   A0A1B0CNW5   A0A1B6BYX4   A0A1B0G8C8   A0A1A9VBM6   A0A1A9Z5U2   A0A1A9XXS4   A0A1B0APR8   E2BWB1   A0A0C9RMH9   A0A1I8PG28   A0A291S6Y0   A0A1B6HDC7   A0A0B7A781   A0A1A9W229   Q8IR12   A0A1W4VJZ6   A0A2J7PN88   A0A0P4WDU2   B4JWY8   B4PXU7   B3NVJ1   B4L846   Q494K8   Q9VXE9   H0RNH8   B4M2X6   B4IF96   B3MSI1   A0A3B0JTJ2   A0A1B6J924   Q29HM9   A0A0M4EVH5   Q24098   A0A182J5N9   E0VYD1   A0A084VQJ7   B4NDL4   A0A3S2PH45   Q765Q5   A0A182QYS1   A0A182NIF4   W5JIT8   A0A087TXT1   A0A182FK52   A0A2J7PN92   A0A182WC99   A0A182PET4   A0A182MHM9   A0A182YLV7   Q8I952   A0A182HI41   A0A182ULJ0   A0A182WTU4   A0A182V9Z7   A0A182JZ96  

PDB

4UX3     E-value=3.41915e-38,     Score=394

KEGG

101736252    K06669 structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6) | (RefSeq) struct

GO

GO:0005524   GO:0005694   GO:0051276   GO:0005634   GO:0001737   GO:0008278   GO:0007476   GO:0003682   GO:0046982  

Subcellular location

Nucleus  

Length:

210

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00726999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01596

outside

1  -  210

 

 

Pi

245.237644

Theta

140.126259

Tajima's D

3.273489

CLR

0.642737

CSRT

0.988900554972251

Interpretation

Uncertain