Gene

KWMTBOMO13638

Pre Gene Modal

BGIBMGA011041

Annotation

PREDICTED:_solute_carrier_family_35_member_F1-like_[Papilio_polytes]

Location

Bomo_Chr23(-):3986497-3990138      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.747

CDS

ATGGAAACGTCAAGTTTCAGTGATAAAGTCGAGATTTATTTCTCGGAACTTGGGCGATGGAAAGTGTGGAGGAGCATACTGCTTGGTCAAGTGTTATCCTTATTTCTGAGCGGCAAATGTATATTAACAACAATGTTACAAAGCGCAACCTGGCAGTTTCCTATCACGGGGCAGCTGGTCGTGCCGTATTTAGTACTGTTTGTACTCTTTACCCCGAGCCTACTTTGTACCGGGCTGGAGAAGCTAACGAAAAGATGGTGGGTACTCATCATTGCCTGTGTTCTTGACGTGGAAGCTGGCTGGCTGCTAGTCATGTCACAGAGGTTTACATCAGTACTTGGTGTTTCTCATGTTGCTGGAGCCACCCTTGGCCTGATGGCTGTAGTCTGCGTTGTGTGGGCTGATGTTGAGGGTGCTCCTACTGATGGTAAAAATCAACTAGTAGGCGATATGCTATGCCTTGGTGGATCATTATTGTTTGCAACAGTCACAGTGCTTCAAGAACTGATGCTCAAAACTCATACATGCTCAGACTATTTAGCGATCCTCGGTATTGTGGGTAGCTTTGTATCTTGCACTCAAACATTCTTTCTGGAATTCCTTGAATTGATGAACTTTAACTGGTATGAGTTAGAGACGATTGTGCAATTGGGAAGCTACTGCACAGTACAAACAATATTCCAGATATTACAATGTTTTATGCTGAGAGATGCTGGGTCTATTTTATTGCATCTATCATTCCTGTCTGCTGACTATTACACTGTGATCGCTGGCATGTATATATTTCAGTTTAAGTTCCACGCTCTATATTTCCTATCATATTTACTGGCGATGGTTGGAGTGTTTCTATTCAGCAGTCGCTCTACGTCGACGCCAGAGCCAACTCCCCCTGAACGTCTGCCCCAGCTCGTCAACGATTCAGTTCAGTCGCAAGATAATGTGTCAATGGAGTACACTGTTCCAACTCTCGACTGCATACCTATAGAAGGATTGGAACCACCGATGAGTCGCGATACAACGTTCACATCGTTTCTCGGTGGACCACAGCATCCCTTACCAAACGGCAACGTCACGTTTGCATCTCCAAATGGTAATCATTCACGAAACGAAAAAGAAACTTAA

Protein

METSSFSDKVEIYFSELGRWKVWRSILLGQVLSLFLSGKCILTTMLQSATWQFPITGQLVVPYLVLFVLFTPSLLCTGLEKLTKRWWVLIIACVLDVEAGWLLVMSQRFTSVLGVSHVAGATLGLMAVVCVVWADVEGAPTDGKNQLVGDMLCLGGSLLFATVTVLQELMLKTHTCSDYLAILGIVGSFVSCTQTFFLEFLELMNFNWYELETIVQLGSYCTVQTIFQILQCFMLRDAGSILLHLSFLSADYYTVIAGMYIFQFKFHALYFLSYLLAMVGVFLFSSRSTSTPEPTPPERLPQLVNDSVQSQDNVSMEYTVPTLDCIPIEGLEPPMSRDTTFTSFLGGPQHPLPNGNVTFASPNGNHSRNEKET

Uniprot

A0A2H1VRC2   A0A026W824   A0A0M9A017   E2AGR2   A0A158NZM2   A0A151K3D8   + More
A0A151IVZ4   A0A195B5H8   A0A2A3ERK4   A0A088AV97   E2BZK0   A0A3L8D5U3   A0A139WNR0   A0A0L7R2F9   A0A232FG89   F4WL11   A0A0C9PNJ5   A0A195FC47   A0A151WLX8   A0A154NXW3   E9IKX8   A0A0P5UN97   A0A0P5BMJ9   A0A0P5S488   A0A0P5JSB9   A0A0P5QM57   A0A0P5ZEJ8   A0A0P6IGN9   A0A0P6BHX1   E9GUJ5   A0A336MH20   A0A336MJV6   A0A0P5E5Y0   A0A067QXW1   A0A1D2MGY1   A0A226DX84   A0A0P5WAP0   A0A2P4VRV9   E3LXJ7   A0A0P5ENN2   A0A260ZBN3   A0A2P4VRY6   A0A261BKK7   A0A1I7T7S0   A0A1B0GM46   W6RRP9   A0A2G5VUR7   W2T9R9   G4SSQ1   A0A158P6C6   A0A016T3U3   A8Y1X6   A0A016T4M4   A0A016T4S7   A0A016T4G7   A0A016T4X2   A0A0C2GPC1   A0A0V1FAB3   A0A0D6LCP2   A0A0D8Y106   A0A238BQJ0   A0A085MKX6   A0A0N5DMB3   A0A1E1XFE8   A0A1I8EBZ6  

Pubmed

24508170    20798317    21347285    30249741    18362917    19820115    + More
28648823    21719571    21282665    21292972    24845553    27289101    26114425    26394399    9851916    25730766    14624247    26856411    24929829    28503490    26850696   

EMBL

ODYU01003979    SOQ43393.1    KK107353    EZA52108.1    KQ435794    KOX73586.1    + More
GL439408    EFN67325.1    ADTU01004757    LKEX01025115    KYN50348.1    KQ980881    KYN11972.1    KQ976587    KYM79741.1    KZ288192    PBC34337.1    GL451627    EFN78898.1    QOIP01000012    RLU15604.1    KQ971310    KYB29517.1    KQ414666    KOC64956.1    NNAY01000248    OXU29712.1    GL888207    EGI64974.1    GBYB01002698    JAG72465.1    KQ981685    KYN37966.1    KQ982944    KYQ48828.1    KQ434778    KZC04421.1    GL764026    EFZ18733.1    GDIP01128082    JAL75632.1    GDIP01182886    JAJ40516.1    GDIQ01092593    JAL59133.1    GDIQ01194706    JAK57019.1    GDIQ01115288    JAL36438.1    GDIP01044811    GDIQ01067662    LRGB01000115    JAM58904.1    JAN27075.1    KZS20762.1    GDIQ01004678    JAN90059.1    GDIP01014824    JAM88891.1    GL732566    EFX76918.1    UFQT01001210    SSX29516.1    UFQT01001263    SSX29751.1    GDIP01147687    JAJ75715.1    KK852894    KDR14203.1    LJIJ01001289    ODM92239.1    LNIX01000009    OXA50082.1    GDIP01089957    JAM13758.1    LFJK02000127    POM40048.1    DS268418    EFO84674.1    GDIP01143748    JAJ79654.1    NMWX01000195    OZF83110.1    POM40046.1    NIPN01000116    OZG10852.1    AJVK01011168    BX284601    CDM63461.1    PDUG01000001    PIC55410.1    KI659816    ETN78618.1    CCD73527.2    JARK01001475    EYB97623.1    HE601428    CAP38896.2    EYB97627.1    EYB97626.1    EYB97625.1    EYB97624.1    KN728816    KIH63200.1    JYDT01000153    KRY83046.1    KE125627    EPB67616.1    KN716273    KJH48281.1    KZ270026    OZC07649.1    KL363186    KFD57872.1    GFAC01001223    JAT97965.1   

Proteomes

UP000053097    UP000053105    UP000000311    UP000005205    UP000078542    UP000078492    + More
UP000078540    UP000242457    UP000005203    UP000008237    UP000279307    UP000007266    UP000053825    UP000215335    UP000007755    UP000078541    UP000075809    UP000076502    UP000076858    UP000000305    UP000027135    UP000094527    UP000198287    UP000237256    UP000008281    UP000216624    UP000216463    UP000095282    UP000092462    UP000001940    UP000230233    UP000035642    UP000024635    UP000008549    UP000054995    UP000053766    UP000046395    UP000093561   

Pfam

PF06027   SLC35F        + More
PF13181   TPR_8

Interpro

IPR009262   SLC35_F1/F2/F6        + More
IPR031101   Ctr9       
IPR019734   TPR_repeat       
IPR011990   TPR-like_helical_dom_sf       
IPR013026   TPR-contain_dom       

SUPFAM

SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

A0A2H1VRC2   A0A026W824   A0A0M9A017   E2AGR2   A0A158NZM2   A0A151K3D8   + More
A0A151IVZ4   A0A195B5H8   A0A2A3ERK4   A0A088AV97   E2BZK0   A0A3L8D5U3   A0A139WNR0   A0A0L7R2F9   A0A232FG89   F4WL11   A0A0C9PNJ5   A0A195FC47   A0A151WLX8   A0A154NXW3   E9IKX8   A0A0P5UN97   A0A0P5BMJ9   A0A0P5S488   A0A0P5JSB9   A0A0P5QM57   A0A0P5ZEJ8   A0A0P6IGN9   A0A0P6BHX1   E9GUJ5   A0A336MH20   A0A336MJV6   A0A0P5E5Y0   A0A067QXW1   A0A1D2MGY1   A0A226DX84   A0A0P5WAP0   A0A2P4VRV9   E3LXJ7   A0A0P5ENN2   A0A260ZBN3   A0A2P4VRY6   A0A261BKK7   A0A1I7T7S0   A0A1B0GM46   W6RRP9   A0A2G5VUR7   W2T9R9   G4SSQ1   A0A158P6C6   A0A016T3U3   A8Y1X6   A0A016T4M4   A0A016T4S7   A0A016T4G7   A0A016T4X2   A0A0C2GPC1   A0A0V1FAB3   A0A0D6LCP2   A0A0D8Y106   A0A238BQJ0   A0A085MKX6   A0A0N5DMB3   A0A1E1XFE8   A0A1I8EBZ6  

KEGG

105841277    no KO assigned | (RefSeq) uncharacterized LOC105841277

GO

GO:0016021   GO:0022857   GO:0016570   GO:0006355   GO:0006810   GO:0006259   GO:0004930   GO:0016491   GO:0016620   GO:0016787   GO:0003676   GO:0015930   GO:0055085  

PANTHER

PTHR14027  

Length:

373

Number of predicted TMHs:

9

Exp number of AAs in TMHs:

179.09918

Exp number, first 60 AAs:

25.43356

Total prob of N-in:

0.34924

POSSIBLE N-term signal

sequence

outside

1  -  19

TMhelix

20  -  42

inside

43  -  48

TMhelix

49  -  71

outside

72  -  85

TMhelix

86  -  105

inside

106  -  111

TMhelix

112  -  134

outside

135  -  146

TMhelix

147  -  166

inside

167  -  178

TMhelix

179  -  198

outside

199  -  212

TMhelix

213  -  235

inside

236  -  239

TMhelix

240  -  262

outside

263  -  265

TMhelix

266  -  285

inside

286  -  373

 

 

Pi

328.71013

Theta

206.22614

Tajima's D

0.875811

CLR

0.276459

CSRT

0.627768611569422

Interpretation

Uncertain