Silkworm Genome Informatics Database

Gene

KWMTBOMO13636 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011069

Annotation

putative_tpr_repeat_nuclear_phosphoprotein_[Danaus_plexippus]

Location

Bomo_Chr23(+):3959559-3975253 View in EpiBrowser

Full name

Histone H2B

Location in the cell

Nuclear Reliability : 2.228

CDS

ATGTCGCTGGAAATACCTTTAATGAGCACCGACGAGGTGATTGACCTGGATCCAGAACAATTACCTTCCGGCGATGAGGTGCTCAGTATTTTACAACAAGAACGCTCACAACTCAATGTTTGGATTAATGTTGCACTCGCATATTACAAACAAAAGAAAATCGATGACTTCCTCAAGATCCTGGAAGCATCACGTACAGATGCCAACATTGACTATCGGGATTTCGAAAGAGATCAGATGCGGGCTCTCGACATGTTGGCCGCATACTATGTGCAAGAAGCTAACAAAGAGAAGTCAAAAGATAAGAAAAAAGAACTATTTACAAAGGCAACATTATTGTACACTATGGCGGATAAAATTATTATGTATGATCAGAACCATCTTCTTGGTAGAGCATATTTCTGCTTATTGGAAGGTGACAAAATGGAACAGGCTGATGCTCAGTTCAACTTTGTCCTAAATCAATCCCCAAATAATGTGCCTTCATTGCTCGGTAAAGCTTGCATAGCTTTCAATCGTAAAGATTACAGAGGGGCACTTGCTTTTTATAAGAAAGCACTTAGAACAAATCCAGACAGCCCAGCCGCTTTGAGACTGGGTATGGGACATTGTTTTATGAAGCTGAATAATCAGGAGAAAGCCAGGATGGCCTTTGAAAGAGCTTTACAATTAGATCCACAATGTGTAGGTGCTTTAGTGGGACTTTCCATTTTAAAATTAAATCTGCAGGAGAGTGAATCAAACAAAATAGCAGTTATTATGTTGTCTAAAGCCTATGCTATTGACCCAAAAAATCCTATGGTTCTAAATCATTTGGCCAATCATTTTTTTTTCAAAAAGGACTACAACAAAGTGCAGCATTTAGCTTTACATGCCTTTCACAATACTGAAAACGAAGCCATGAGAGCTGAGAGCTGCCACCACTTGGCGAGAGCCTTCCACGCGCAAGGAGACTGCGATAAGGCCTTCCAGTATTATTATCAAGCCACACAGTTTGCGCCACCTAATTTTGTACTTCCCCATTATGGACTAGGACAAATGTATATTTACAGGGGGGACACGGAAAATGCAGCACAATGCTTTGAAAAAATACTCAAAGCTCAGCCTGGTAACTACGAGACAATGAAGATATTGGGCTCGTTGTACGCCAATTCGCCGTCGCAATCAAAACGTGACATCGCTCGGCAGCACTTGAAGAAGGTCACGGAACAGTTTCCAGACGACGTGGAGGCTTGGATAGAGTTGGCTCAAATATTGGAGCAAAATGATTTACAGGGTTCCCTAAACGCTTACAGTACTGCTATGAAAATTTTAAAGGAGAAAGTAAACGCTGACATACCAGCCGAAATATTAAATAATGTTGCAGCCCTACATTACAGATTAGGAAATTTGAATGAAGCGAAAAAATATCTTGAAGAAGCTCTTGAAAGGGAGAAATCTGATGCGGAGGCATTAGACGCACAATATTACAATTCAATAGCAGTGACGACAATGTACAACCTGGCGAGGTTGAACGAAGCTTTGTGCATGTACAACAAAGCTGAGAAACTTTATAAAGACATACTGAAGGAGCATCCAAACTATATTGATTGTTATTTAAGGTTAGGATGTATGGCTCGCGATAAAGGTCAGATATATGAAGCTTCAGATTGGTTCAAAGAAGCTCTGAAAGTGAACACAGAACATCCTGACACATGGTCGTTGTTGGGAAATCTCCATTTGGCTCAACAAGAGTGGGGTCCTGGACAAAAGAAGTTTGAAAGGATTTTACAGAACTCTTCAACTTCCAACGATGCTTATTCTCTCATTGCTCTTGGAAACGTGTGGCTTCAAACCCTTCATCAGCCATGTCGTGAGAAGGACAGGGAAAAAAGACATCAAGAACGCGCCCTAACGATGTACAAGCAAGTTTTGAAAACCGATCCGAAGAACATCTGGGCTGCAAACGGAATCGGTTGTGTGTTGGCTCATAAGGGCTGTATAAACGAAGCACGCGACATATTCGCACAGGTGCGCGAAGCGACGGCGGACTTTCCCGACGTATGGATGAATATTGCACATATTTACGTTGAACAAAAACAATACATTAACGCCATACAGATGTACGAGAACTGCATCCGCAAGTTCCGCATGCAGCACGACGTGGAGTGGCTGACGTGGGTGGCGCGCGCGCAGGGGCTGGCGGGGCGGGCGCGGTGCGCGCGGGGGGCGCTGCTGCGGGCGCGCCGCGTGGCGCCGCACGACCCCGCGCTGCAGTACAACACGGCGCTCACACTGCGCCGCCGCGCCGCCGCCGTGCTCAAGGACGACCGCGCCGACCTCGCGCTCGTGCTGCGCGCCGTGCACGAGCTGCAGGTCTCGCACAGATACTTCGAGCGGTTATCATCAGAGGGCGCGGCAGAGGGCGGCGCGGGCGCGGCGGGGGGCGGCCCGTGGGGCGGGGCGGCGGCGGAGGCGCGCACGTGCGCGGACCTACTGTCGCAGGCGCAGTGGCACGTCGCACGTGCGCGCAGACAACACCACGAGGAGCTGTCGCTGCGGGACAAGCAACGGGAACAGCGAGAGGCCTTCCGCAGGCAACAGGAAGAGGAGCGGCGGATTCGCGAAGAACAACAACAGAAGAGCACCGTCGAGATGCTCCAGAAGCGACAGGAGTACAAGGAGAAGACGAAAAACGCGCTGCTGTTCACCGAGATGCCGGAGAGCAAGCCCCGGGGCGGGGGGAGAGGGAGGAGGAGAGACGAGTACATATCGGACTCGCCTGGAAGTGGGAGCGATCGTCCGCCTGAAGAAAAACGCGAGGCCAAACAGAAGAAGCGTAAACGCGAAGGCGGCGAAGGGAAGAAAGGCAAGTCGAGGAAGCGCAGGGAGCAGCGCGGCTCCGGCAGCGACAGCGACCCGCCCAGGAAGAAGGGCAGGAAACGGGGTGAAAAGGGCATCGGTCGCCGGGAACGCGCCAAAGCGAAAGCTGCGGAAGAGAAGCTCAGCGCGAAGCAACGCGCAAAGATCGTTTCCAAGGAGACCATATCCACCTCGGAATCCGACTCGGATAATTCGAGAAAGTCGCGTAGCCGCAGTCGAAGTCGCAGCAAGAGCGGCAGCGGGAGTCCGCCCGCCGCCAAGGGAAGGAAGAGGATCATGTCGGCCTCCGATAGCGACAGGTAA

Protein

MSLEIPLMSTDEVIDLDPEQLPSGDEVLSILQQERSQLNVWINVALAYYKQKKIDDFLKILEASRTDANIDYRDFERDQMRALDMLAAYYVQEANKEKSKDKKKELFTKATLLYTMADKIIMYDQNHLLGRAYFCLLEGDKMEQADAQFNFVLNQSPNNVPSLLGKACIAFNRKDYRGALAFYKKALRTNPDSPAALRLGMGHCFMKLNNQEKARMAFERALQLDPQCVGALVGLSILKLNLQESESNKIAVIMLSKAYAIDPKNPMVLNHLANHFFFKKDYNKVQHLALHAFHNTENEAMRAESCHHLARAFHAQGDCDKAFQYYYQATQFAPPNFVLPHYGLGQMYIYRGDTENAAQCFEKILKAQPGNYETMKILGSLYANSPSQSKRDIARQHLKKVTEQFPDDVEAWIELAQILEQNDLQGSLNAYSTAMKILKEKVNADIPAEILNNVAALHYRLGNLNEAKKYLEEALEREKSDAEALDAQYYNSIAVTTMYNLARLNEALCMYNKAEKLYKDILKEHPNYIDCYLRLGCMARDKGQIYEASDWFKEALKVNTEHPDTWSLLGNLHLAQQEWGPGQKKFERILQNSSTSNDAYSLIALGNVWLQTLHQPCREKDREKRHQERALTMYKQVLKTDPKNIWAANGIGCVLAHKGCINEARDIFAQVREATADFPDVWMNIAHIYVEQKQYINAIQMYENCIRKFRMQHDVEWLTWVARAQGLAGRARCARGALLRARRVAPHDPALQYNTALTLRRRAAAVLKDDRADLALVLRAVHELQVSHRYFERLSSEGAAEGGAGAAGGGPWGGAAAEARTCADLLSQAQWHVARARRQHHEELSLRDKQREQREAFRRQQEEERRIREEQQQKSTVEMLQKRQEYKEKTKNALLFTEMPESKPRGGGRGRRRDEYISDSPGSGSDRPPEEKREAKQKKRKREGGEGKKGKSRKRREQRGSGSDSDPPRKKGRKRGEKGIGRRERAKAKAAEEKLSAKQRAKIVSKETISTSESDSDNSRKSRSRSRSRSKSGSGSPPAAKGRKRIMSASDSDR

Subunit

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.

Similarity

Belongs to the histone H2B family.

Uniprot

A0A2H1VXA5 A0A2A4J271 A0A3S2NQH7 A0A212EL98 A0A194PR97 A0A2A3ERH6 + More
A0A195B648 A0A088AV98 A0A158NZM3 F4WL10 A0A0J7P4Y3 A0A195D1T2 E2AGR3 E2BZK1 A0A026WAT4 A0A151IVV6 D6WC33 E9IKS9 A0A067QZ69 A0A2J7R1S9 A0A2J7R1S8 A0A1W4WUH4 A0A154NXW3 E0VTP4 A0A0V0G5I1 A0A069DY87 A0A0P4VM16 T1I2P5 A0A0C9QYQ6 A0A1Y1L1J2 A0A232ETL8 A0A0M8ZYM0 A0A1B6F1S2 A0A224XI96 A0A151WLX8 A0A195FC47 A0A182PGT3 A0A084VBR5 A0A182HL80 A0A336K1N5 Q8T5I7 A0A182VJA2 A0A182TIE4 A0A182WSC9 A0A182K3N8 A0A182IN46 A0A182N5V4 A0A182QDT6 A0A182MHW9 A0A182SAD7 A0A1B0CM79 A0A182VWK3 W5J743 A0A182R4T9 Q16PY9 A0A2M4BB52 A0A2M4BAI1 A0A2M4BAH3 A0A2M4AE18 A0A182GQP4 A0A2M4AE98 U4US27 A0A0A9Y6F9 A0A1Z5KUV4 A0A182FBN6 A0A182YAD8 A0A0K8TEJ9 A0A0A9YAJ5 A0A2R5LJB8 A0A293MVI1 A0A1E1XBG5 A0A1Q3FAC2 A0A1Q3F8D0 A0A0K8TDD4 B0XB88 L7LSG8 A0A1S3JYR4 A0A131XDK4 A0A131YWU0 A0A087SZR3 A0A224Z839 E9HUB2 A0A131XTC1 A0A0A1WN55 A0A0L7R250 T1IZZ1 A0A0L0BZC3 A0A034WBV2 A0A0P5KG09 A0A164K897 A0A0P5I508 A0A0P5KBA3 A0A0P5MTY8 A0A0P5J9I9 W8ATB5 A0A0P5IPF6 A0A0N8CEQ3 A0A0N8D3C7 A0A0P6IPA1 A0A2C9K960

Pubmed

22118469 26354079 21347285 21719571 20798317 24508170 + More
18362917 19820115 21282665 24845553 20566863 26334808 27129103 28004739 28648823 24438588 12060762 12364791 14747013 17210077 20920257 23761445 17510324 26483478 23537049 25401762 28528879 25244985 28503490 25576852 28049606 26830274 28797301 21292972 25830018 26108605 25348373 24495485 15562597

EMBL

ODYU01004687 SOQ44834.1 NWSH01004103 PCG65492.1 RSAL01000146 RVE45901.1 + More
AGBW02014109 OWR42248.1 KQ459595 KPI95832.1 KZ288192 PBC34338.1 KQ976587 KYM79742.1 ADTU01004759 GL888207 EGI64973.1 LBMM01000098 KMR04974.1 KQ976948 KYN06875.1 GL439408 EFN67326.1 GL451627 EFN78899.1 KK107353 EZA52109.1 KQ980881 KYN11976.1 KQ971310 EEZ99122.1 GL764026 EFZ18847.1 KK852818 KDR15708.1 NEVH01008202 PNF34785.1 PNF34787.1 KQ434778 KZC04421.1 DS235769 EEB16750.1 GECL01002778 JAP03346.1 GBGD01000162 JAC88727.1 GDKW01001045 JAI55550.1 ACPB03006553 GBYB01000840 JAG70607.1 GEZM01067242 JAV67549.1 NNAY01002259 OXU21710.1 KQ435794 KOX73587.1 GECZ01025651 JAS44118.1 GFTR01008657 JAW07769.1 KQ982944 KYQ48828.1 KQ981685 KYN37966.1 ATLV01009110 KE524504 KFB35409.1 APCN01000883 UFQS01000043 UFQT01000043 SSW98401.1 SSX18787.1 AJ439353 AAAB01008987 CAD27925.1 EAA00907.1 AXCN02001150 AXCM01005562 AJWK01018335 AJWK01018336 AJWK01018337 AJWK01018338 AJWK01018339 AJWK01018340 AJWK01018341 ADMH02002042 ETN59796.1 CH477768 EAT36444.1 GGFJ01000897 MBW50038.1 GGFJ01000896 MBW50037.1 GGFJ01000898 MBW50039.1 GGFK01005712 MBW39033.1 JXUM01081031 JXUM01081032 KQ563223 KXJ74257.1 GGFK01005794 MBW39115.1 KB632423 ERL95323.1 GBHO01014972 JAG28632.1 GFJQ02008103 JAV98866.1 GBRD01002246 JAG63575.1 GBHO01014973 JAG28631.1 GGLE01005458 MBY09584.1 GFWV01020084 MAA44812.1 GFAC01002593 JAT96595.1 GFDL01010510 JAV24535.1 GFDL01011215 JAV23830.1 GBRD01002248 JAG63573.1 DS232617 EDS44141.1 GACK01011206 JAA53828.1 GEFH01004119 JAP64462.1 GEDV01005130 JAP83427.1 KK112712 KFM58352.1 GFPF01011494 MAA22640.1 GL732803 EFX64668.1 GEFM01006975 JAP68821.1 GBXI01014479 JAC99812.1 KQ414666 KOC64955.1 JH431728 JRES01001117 JRES01000240 KNC25427.1 KNC33032.1 GAKP01007165 JAC51787.1 GDIQ01185894 JAK65831.1 LRGB01003375 KZS03039.1 GDIQ01223436 JAK28289.1 GDIQ01188090 JAK63635.1 GDIQ01162751 GDIQ01078328 JAK88974.1 GDIQ01253435 GDIQ01252527 GDIQ01252526 GDIQ01245229 GDIQ01243927 GDIQ01235882 GDIQ01234784 GDIQ01226629 GDIQ01226628 GDIQ01223435 GDIQ01220584 GDIQ01220583 GDIQ01206536 GDIQ01206535 GDIQ01203338 GDIQ01203337 GDIQ01190837 GDIQ01189445 GDIQ01189444 GDIQ01185893 GDIQ01184940 GDIQ01179047 GDIQ01169855 GDIQ01165103 GDIQ01163903 GDIQ01159897 GDIQ01157750 GDIQ01146734 GDIQ01146733 GDIQ01142460 GDIQ01140672 GDIQ01116218 GDIQ01116217 GDIQ01084790 GDIQ01082529 GDIQ01080231 GDIQ01078329 GDIQ01078327 GDIQ01051654 GDIQ01051653 GDIQ01035696 GDIQ01032455 JAK48387.1 GAMC01014505 GAMC01014503 JAB92050.1 GDIQ01209829 JAK41896.1 GDIP01139023 JAL64691.1 GDIP01072831 JAM30884.1 GDIQ01018833 JAN75904.1

Proteomes

UP000218220 UP000283053 UP000007151 UP000053268 UP000242457 UP000078540 + More
UP000005203 UP000005205 UP000007755 UP000036403 UP000078542 UP000000311 UP000008237 UP000053097 UP000078492 UP000007266 UP000027135 UP000235965 UP000192223 UP000076502 UP000009046 UP000015103 UP000215335 UP000053105 UP000075809 UP000078541 UP000075885 UP000030765 UP000075840 UP000007062 UP000075903 UP000075902 UP000076407 UP000075881 UP000075880 UP000075884 UP000075886 UP000075883 UP000075901 UP000092461 UP000075920 UP000000673 UP000075900 UP000008820 UP000069940 UP000249989 UP000030742 UP000069272 UP000076408 UP000002320 UP000085678 UP000054359 UP000000305 UP000053825 UP000037069 UP000076858 UP000076420

Pfam

PF13181   TPR_8        + More
PF07719   TPR_2
PF06027   SLC35F
PF13176   TPR_7
PF00125   Histone
PF13174   TPR_6
PF00515   TPR_1
PF17874   TPR_MalT
PF18111   RPGR1_C
PF11618   C2-C2_1

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR019734   TPR_repeat
IPR013026   TPR-contain_dom
IPR031101   Ctr9
IPR013105   TPR_2
IPR009262   SLC35_F1/F2/F6
IPR007125   Histone_H2A/H2B/H3
IPR000558   Histone_H2B
IPR009072   Histone-fold
IPR001440   TPR_1
IPR041617   TPR_MalT
IPR003107   HAT
IPR035892   C2_domain_sf
IPR041091   RPGRIP1_C
IPR021656   C2-C2_1

SUPFAM

SSF48452 SSF48452 + More
SSF47113 SSF47113

Gene 3D

1.25.40.10 1.10.20.10 2.60.40.150

ProteinModelPortal

A0A2H1VXA5 A0A2A4J271 A0A3S2NQH7 A0A212EL98 A0A194PR97 A0A2A3ERH6 + More
A0A195B648 A0A088AV98 A0A158NZM3 F4WL10 A0A0J7P4Y3 A0A195D1T2 E2AGR3 E2BZK1 A0A026WAT4 A0A151IVV6 D6WC33 E9IKS9 A0A067QZ69 A0A2J7R1S9 A0A2J7R1S8 A0A1W4WUH4 A0A154NXW3 E0VTP4 A0A0V0G5I1 A0A069DY87 A0A0P4VM16 T1I2P5 A0A0C9QYQ6 A0A1Y1L1J2 A0A232ETL8 A0A0M8ZYM0 A0A1B6F1S2 A0A224XI96 A0A151WLX8 A0A195FC47 A0A182PGT3 A0A084VBR5 A0A182HL80 A0A336K1N5 Q8T5I7 A0A182VJA2 A0A182TIE4 A0A182WSC9 A0A182K3N8 A0A182IN46 A0A182N5V4 A0A182QDT6 A0A182MHW9 A0A182SAD7 A0A1B0CM79 A0A182VWK3 W5J743 A0A182R4T9 Q16PY9 A0A2M4BB52 A0A2M4BAI1 A0A2M4BAH3 A0A2M4AE18 A0A182GQP4 A0A2M4AE98 U4US27 A0A0A9Y6F9 A0A1Z5KUV4 A0A182FBN6 A0A182YAD8 A0A0K8TEJ9 A0A0A9YAJ5 A0A2R5LJB8 A0A293MVI1 A0A1E1XBG5 A0A1Q3FAC2 A0A1Q3F8D0 A0A0K8TDD4 B0XB88 L7LSG8 A0A1S3JYR4 A0A131XDK4 A0A131YWU0 A0A087SZR3 A0A224Z839 E9HUB2 A0A131XTC1 A0A0A1WN55 A0A0L7R250 T1IZZ1 A0A0L0BZC3 A0A034WBV2 A0A0P5KG09 A0A164K897 A0A0P5I508 A0A0P5KBA3 A0A0P5MTY8 A0A0P5J9I9 W8ATB5 A0A0P5IPF6 A0A0N8CEQ3 A0A0N8D3C7 A0A0P6IPA1 A0A2C9K960

PDB

6GMH E-value=0, Score=1811

KEGG

101742618 K15176 RNA polymerase-associated protein CTR9 | (RefSeq) RNA polymerase-associated protein CTR9 homo

GO

GO:0016570 GO:0006355 GO:0016593 GO:0051569 GO:0000993 GO:0022857 GO:0016021 GO:0003677 GO:0000786 GO:0005634 GO:0046982 GO:0006396 GO:0005515 GO:0004518 GO:0006259 GO:0004930 GO:0016491 GO:0016620 GO:0016787 GO:0003676 GO:0015930

PANTHER

PTHR14027

Subcellular location

Nucleus

Length:

1054

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00132

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00008

outside

1 - 1054

Pi

217.33031

Theta

194.169285

Tajima's D

0.996701

CLR

0.396803

CSRT

0.658367081645918

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics