Silkworm Genome Informatics Database

Gene

KWMTBOMO13625

Pre Gene Modal

BGIBMGA011063

Annotation

PREDICTED:_uncharacterized_protein_LOC106137340_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr23(+):3360262-3370240 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.469

CDS

ATGTCTCCTTCCGACATCACCTTGATAGAAAGGCTCCGAAATGAGAATTTAGAACAATATTTTACTTTAGTTCGGATGCATCTATCATTTGTTGTAGATATAAACACTGACGATGTTGATTGTTCAACAGACAAACCAAAGCAGTTCCGATGGAATTTTCATAAGAAAAATAAATCCTCTACTACGAGTTCTAGTCAAAATAATACAAATAATGTAAAATGTAGTACAGAAATTAAATCTATCACAGAAGATGGTATCGCAAGACTGAATGAGCTGATAGATTTTCTATCGAAGCCAGAAAATGTCCAGCAAGAAGGAATATTTCGAAGAACTGGGTCCCTAAGCCGTCAGCAGGAGCTCAAACAGCTATTACTAACTGGTTCCAACCTTGGCCTTGATGCTGGAAAGTTTTCAGTACATGATTGTGCATCTGTACTCAAAGGATTCCTTGCTGAACTTCCACAACCATTATTGATGGATCAGTATTATCAAACTTACTGTACATTAGCAGTACAATACCCCCCAAATGCTGAGACATCGGAAACGAAACTATTGACAGCTCTACAGTTACTACTTCTCCTACTGAGTCCTACGCACCGAAGTTTCTTACAAAGACTACTGAGGCTACTACGTCTGGTTGCTGACAACGAGGCAGCAAATCGGATGTCCCCAGACACATTGGCCACAATGTTTACACCTCATCTTTTGTGTCCTAGAAAGCTTTCGCCGGAGAACTTTCACGCGGACGCGATAGCTCTGTCTCCGGTGATCAGCTTCATGATCCGCGAGTCCCGGCGCGTGTTCGAGGCGCCGCGGCGGCTGGCGACGGACGCGGCCGCCTACTTCACGCTGCGGAGACGGCGCGCCATGTCGCCCGATATCAACTTAGACGACAGCATCACTGATAAAACAGCAGCAAACACAGTGTACACATTTGTGGACAGGAACAGGACGAAAGCCGAAAATGAAACTAATCCGACAGACACGGCCCTAGCTCAGCTTTATGCGCACATACAAGCATTGCCAGATTCGCATCAAAAGAGACGACTGATCAAGCATTTCAACAGGCAAAACGGATACGGCACACCTATTCAAATACAGCGTACCGGTAAAGTGGCAGGCTCCAGAAGTTTTGGTGATTCGATCAAAAGACACATATTCAATAAGGGTCTCTTGAATAAAACGCCAAAGAAATGCTCCACCGCCAACATTGATACCATAGAAGAGAAAACGGCGAAAGGGAAAATGCGATTCGCCGATGACAAAGTCGACGTCTCACACAAGAACATCGTTTTAAAGAACTTAGCCAATAAAATCGCTAGTTCCGAGTCATTGGATGACGACTACCAATCGGACGTGAGCAACGACAGCACGTTGTCCGAGGGAGCTTTGAGCAAATCGAAAAAGCTCAGTCCGAAATTCGTTTCCGAACCGAATCTGAGCGTTCTCGACGCGGACGAGACGCCGAAAACCGCCAAAAAGCGATTGTTCCGTTCGAAAATTGTGACGTCACAGAACAAGAAGTACCAGAAGCGGAACGGGCCCGTCCGCGGCACGCCCACCTGCGTCTCCTGCTTCGACGACCAAGATACCGGCTCCGATTTATCGTGCACAGACACGCCAAAGAAATCACGACTCTGCGACGAGGAGATAAAGCACTATTTGACTAGCACTCCGGGGATGACAGAGACGGCGTTCGACGGAGAATGTTCAACTCCTTACACGATAAACTTTAGGAGGGCTTCAATGTCGCCCATAACTAAATCGACCCAGAAATTGTCTAAAGCCATGCAGGAATCGATAATGACACCCAGGTCTCGCAAGCCGCTGATAATAACGTCGGAGCAACGTGACATGCCCGATACAAACGAGAACAAACTCACGGATAAATCCGTTGAAATATATCGTACTATAGAAAACGATATATCGCCCAAGAACGATAGTGATTTTGTCTCTTCCGACGACGACAACGAAATGTCTAGTTCTAGTTTTTCTTGTGAGCGTTCCAGGTCAATGCAGTCGATAAACGGGACACGACCGAGAAAGAAAACTCATCACGATAGCCGATCTATATCTCTGGGCGACATAAGCCCTTTAAGATGCGAAAATACAAGATTCGTAATAAGCCAAGAACCCACAAGGCATATCGATAAATCTCTTGACACAACACTTTGCAGCGACGGGGCTCCGCTACCGAAGTTCAAAATATCACACGAAATAACAACAGATCACATCACTAAGTCACTAACCGATCCATTCAGAGAGTATTTACTCAGTAGATCCGTTCTAACCGCCACACCTATTGACTTATCGATAATAAACAAATCGAATGACAATGATGAGAAACTCTCTGATTCGCTCATGTACTGCTTAGACGGAAACGTCCCTAGTGATCTCACGCTGTCCATTAGCAATTTGGCGGTCGATAAAGATGATCGATTACCTATGATGAATATCGATACTAATATCGATATAAGTCCGAAAAGGAAACGTTGTGATTCTAATACTTCGGCTGATGCAAAGAAAGGAATTAAGAAGTTGAATGTCGAAAAAGAGAATATTAAAGCACACGGCTTACGAGAGACCGAATTATAA

Protein

MSPSDITLIERLRNENLEQYFTLVRMHLSFVVDINTDDVDCSTDKPKQFRWNFHKKNKSSTTSSSQNNTNNVKCSTEIKSITEDGIARLNELIDFLSKPENVQQEGIFRRTGSLSRQQELKQLLLTGSNLGLDAGKFSVHDCASVLKGFLAELPQPLLMDQYYQTYCTLAVQYPPNAETSETKLLTALQLLLLLLSPTHRSFLQRLLRLLRLVADNEAANRMSPDTLATMFTPHLLCPRKLSPENFHADAIALSPVISFMIRESRRVFEAPRRLATDAAAYFTLRRRRAMSPDINLDDSITDKTAANTVYTFVDRNRTKAENETNPTDTALAQLYAHIQALPDSHQKRRLIKHFNRQNGYGTPIQIQRTGKVAGSRSFGDSIKRHIFNKGLLNKTPKKCSTANIDTIEEKTAKGKMRFADDKVDVSHKNIVLKNLANKIASSESLDDDYQSDVSNDSTLSEGALSKSKKLSPKFVSEPNLSVLDADETPKTAKKRLFRSKIVTSQNKKYQKRNGPVRGTPTCVSCFDDQDTGSDLSCTDTPKKSRLCDEEIKHYLTSTPGMTETAFDGECSTPYTINFRRASMSPITKSTQKLSKAMQESIMTPRSRKPLIITSEQRDMPDTNENKLTDKSVEIYRTIENDISPKNDSDFVSSDDDNEMSSSSFSCERSRSMQSINGTRPRKKTHHDSRSISLGDISPLRCENTRFVISQEPTRHIDKSLDTTLCSDGAPLPKFKISHEITTDHITKSLTDPFREYLLSRSVLTATPIDLSIINKSNDNDEKLSDSLMYCLDGNVPSDLTLSISNLAVDKDDRLPMMNIDTNIDISPKRKRCDSNTSADAKKGIKKLNVEKENIKAHGLRETEL

Uniprot

H9JNG0 A0A2H1VWN2 A0A2W1BKS9 A0A2A4JPH8 A0A194PSA1 A0A212EQ74 + More
A0A0N1PFM9 A0A3S2LG79 A0A151X6P7 A0A158NJL5 A0A195BFT4 A0A195EKL6 A0A1B6BWW8 A0A1B6JIN6 A0A0C9QJX6 A0A1B6C0X5 A0A151ILB1

Pubmed

19121390 28756777 26354079 22118469 21347285

EMBL

BABH01019270 ODYU01004884 SOQ45213.1 KZ149986 PZC75682.1 NWSH01000935 + More
PCG73484.1 KQ459595 KPI95843.1 AGBW02013317 OWR43611.1 KQ461153 KPJ08666.1 RSAL01000015 RVE53125.1 KQ982482 KYQ55968.1 ADTU01018044 ADTU01018045 KQ976490 KYM83445.1 KQ978782 KYN28414.1 GEDC01031798 JAS05500.1 GECU01008646 JAS99060.1 GBYB01003829 JAG73596.1 GEDC01030141 JAS07157.1 KQ977126 KYN05519.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000007151 UP000053240 UP000283053 + More
UP000075809 UP000005205 UP000078540 UP000078492 UP000078542

PRIDE

H9JNG0

Pfam

PF00620 RhoGAP

Interpro

IPR008936 Rho_GTPase_activation_prot + More
IPR000198 RhoGAP_dom

SUPFAM

SSF48350 SSF48350

Gene 3D

1.10.555.10

ProteinModelPortal

H9JNG0 A0A2H1VWN2 A0A2W1BKS9 A0A2A4JPH8 A0A194PSA1 A0A212EQ74 + More
A0A0N1PFM9 A0A3S2LG79 A0A151X6P7 A0A158NJL5 A0A195BFT4 A0A195EKL6 A0A1B6BWW8 A0A1B6JIN6 A0A0C9QJX6 A0A1B6C0X5 A0A151ILB1

PDB

5HPY E-value=4.10514e-10, Score=159

KEGG

101746504 K20640 Rho GTPase-activating protein 19 | (RefSeq) rho GTPase-activating protein 19

GO

GO:0007165 GO:0019509 GO:0046872 GO:0006508 GO:0008237 GO:0008152 GO:0016787 GO:0003676 GO:0016491 GO:0015930

Length:

864

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0049

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00024

outside

1 - 864

Pi

254.501836

Theta

184.495957

Tajima's D

-1.340265

CLR

1.253255

CSRT

0.0857957102144893

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics