Gene

KWMTBOMO13624  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011062

Annotation

LSM1-like_protein_[Bombyx_mori]

Location

Bomo_Chr23(+):3355672-3357335      View in EpiBrowser

Full name

U6 snRNA-associated Sm-like protein LSm1      

Location in the cell

Cytoplasmic   Reliability : 1.427 Nuclear   Reliability : 1.244

CDS

ATGTCTAGTAATACAAACCCTTTAGCTGGGACGGCGCATCTTCTCGACGAATTAGACAAGAAACTAATGGTGTTGCTGCGTGACGGAAGGACGCTTATCGGGTATTTACGCTGCGTGGATCAATTCGCTAATCTAGTGCTCCACAAGACAATAGAACGAATACACGTTGGCAAAGAATACGGTGATATTCCGAGAGGCATTTTCATTGTTAGAGGAGAGAATGTTGTTCTACTTGGTGAAATAGACAAAGACAAAGAAGAAAATCTCCCTCTAACGGAAGTATCAGTAGATGAAATACTAGATGCTCAAAGAAGAGAACAAGATGCGAAGATTGATCAACAAAAATTGTTATCAAAAGCTTTAAAAGAAAGAGGGCTTAATTTACTAGCAGATCTTGGACACGATGATATGTTTTAA

Protein

MSSNTNPLAGTAHLLDELDKKLMVLLRDGRTLIGYLRCVDQFANLVLHKTIERIHVGKEYGDIPRGIFIVRGENVVLLGEIDKDKEENLPLTEVSVDEILDAQRREQDAKIDQQKLLSKALKERGLNLLADLGHDDMF

Description

Probably involved with other LSm subunits in the general process of degradation of mRNAs.

Subunit

LSm subunits form a heteromer with a donut shape.

Similarity

Belongs to the snRNP Sm proteins family.

Uniprot

Q1HQ51   A0A3S2MAY4   A0A2A4JPX3   A0A2W1BV98   A0A0N1IBU3   I4DKE1   + More
A0A2H1VYC2   A0A0L7L8H1   S4PDA2   A0A212EQ38   H9JNF9   A0A1E1WST2   A0A1Y1N6W9   A0A0L7RK61   K7J9P3   V9IL93   A0A088AQN3   A0A0C9R6G9   A0A067R7S7   A0A2J7QCJ0   N6TSW2   A0A2A3EGX0   A0A182GUR6   A0A1B6GJ98   E2B862   A0A023EG51   A0A1Q3G367   Q17P42   A0A1L8DGM8   A0A1B6MSM3   B0WRR5   A0A1B0DGC5   A0A1B6L6G9   A0A0K8TPD1   D7EI70   A0A2M3ZD33   A0A2M4AYL9   A0A2M4C360   W5J1H3   A0A182FQP5   A0A069DPD0   A0A0V0G929   E0VYP1   T1GW79   A0A084VQL0   A0A182J522   A0A0P4VP74   R4FL32   Q4V6R8   A0A023FAS4   A0A336LP47   A0A2R7WMS2   U5EWI4   A0A0T6AZF8   A0A182QB70   E2ARW6   A0A0A9XH16   A0A1B6DJZ1   A0A182LX64   A0A182R8V5   A0A182Y3Q0   A0A195EJI4   A0A151ILB4   F4X418   A0A195BGV0   A0A195FM71   A0A158NJL6   A0A151X6I3   A0A182NRX0   E9JC43   A0A182PSL9   A0A182VZJ1   A0A182US35   A0A182JZH7   A0A182TE41   A0A182LA02   A0A182WSQ2   Q7PY05   A0A182HLK4   T1DNB8   A0A154NZF6   A0A0L0BUI5   B4MNX6   A0A0K8VZK0   A0A034V1C6   A0A1I8NGT4   A0A0A1WI70   B4LMQ7   B4KNC1   A0A0M3QUM0   B3MDT1   W8BVL5   A0A1I8PGW4   B3NJP1   A0A3B0JTK9   Q28X08   B4H4V3   A0A1W4UMK3   B4P9G6   B4I7L2  

Pubmed

28756777    26354079    22651552    26227816    23622113    22118469    + More
19121390    28004739    20075255    24845553    23537049    26483478    20798317    24945155    17510324    26369729    18362917    19820115    20920257    23761445    26334808    20566863    24438588    27129103    25474469    25401762    26823975    25244985    21719571    21347285    21282665    20966253    12364791    14747013    17210077    26108605    17994087    25348373    25315136    25830018    24495485    15632085    17550304   

EMBL

DQ443201    ABF51290.1    RSAL01000002    RVE55024.1    RVE55077.1    NWSH01000935    + More
PCG73483.1    KZ149986    PZC75683.1    KQ461153    KPJ08665.1    AK401759    KQ459595    BAM18381.1    KPI95844.1    ODYU01004884    SOQ45214.1    JTDY01002247    KOB71802.1    GAIX01003746    JAA88814.1    AGBW02013317    OWR43612.1    BABH01019270    GDQN01000994    JAT90060.1    GEZM01011086    JAV93654.1    KQ414578    KOC71198.1    AAZX01008083    JR052962    AEY61830.1    GBYB01008402    JAG78169.1    KK852643    KDR19580.1    NEVH01016289    PNF26297.1    APGK01053342    KB741223    KB630494    KB630981    ENN72365.1    ERL83629.1    ERL83978.1    KZ288253    PBC31015.1    JXUM01018890    KQ560525    KXJ81981.1    GECZ01027119    GECZ01007253    JAS42650.1    JAS62516.1    GL446284    EFN88119.1    GAPW01005798    JAC07800.1    GFDL01000793    JAV34252.1    CH477194    EAT48458.1    GFDF01008590    JAV05494.1    GEBQ01001084    JAT38893.1    DS232058    EDS33469.1    AJVK01059507    GEBQ01020659    JAT19318.1    GDAI01001602    JAI16001.1    DS497673    EFA13273.1    GGFM01005670    MBW26421.1    GGFK01012568    MBW45889.1    GGFJ01010593    MBW59734.1    ADMH02002181    ETN58022.1    GBGD01003412    JAC85477.1    GECL01001731    JAP04393.1    AAZO01006277    DS235845    EEB18497.1    CAQQ02153970    ATLV01015250    KE525004    KFB40254.1    GDKW01001801    JAI54794.1    ACPB03023383    GAHY01001593    JAA75917.1    BT022238    AAY54654.1    GBBI01000694    JAC18018.1    UFQT01000095    SSX19690.1    KK855095    PTY20799.1    GANO01001399    JAB58472.1    LJIG01022452    KRT80521.1    AXCN02000252    GL442192    EFN63815.1    GBHO01024332    GBHO01024330    GBRD01000620    GDHC01000076    JAG19272.1    JAG19274.1    JAG65201.1    JAQ18553.1    GEDC01011311    JAS25987.1    AXCM01000138    KQ978782    KYN28413.1    KQ977126    KYN05518.1    GL888624    EGI58951.1    KQ976490    KYM83446.1    KQ981424    KYN41795.1    ADTU01018046    KQ982482    KYQ55967.1    GL771706    EFZ09609.1    AAAB01008987    EAA00900.3    APCN01000909    GAMD01003025    JAA98565.1    KQ434777    KZC04260.1    JRES01001317    KNC23653.1    CH963848    EDW73815.1    GDHF01007976    JAI44338.1    GAKP01023373    JAC35585.1    GBXI01015956    GBXI01000253    JAC98335.1    JAD14039.1    CH940648    EDW60998.1    CH933808    EDW09974.1    CP012524    ALC40863.1    CH902619    EDV36466.1    GAMC01001200    JAC05356.1    CH954179    EDV55420.1    OUUW01000001    SPP74408.1    CM000071    EAL26508.1    CH479210    EDW32789.1    CM000158    EDW91286.1    CH480824    EDW56587.1   

Proteomes

UP000283053    UP000218220    UP000053240    UP000053268    UP000037510    UP000007151    + More
UP000005204    UP000053825    UP000002358    UP000005203    UP000027135    UP000235965    UP000019118    UP000030742    UP000242457    UP000069940    UP000249989    UP000008237    UP000008820    UP000002320    UP000092462    UP000007266    UP000000673    UP000069272    UP000009046    UP000015102    UP000030765    UP000075880    UP000015103    UP000075886    UP000000311    UP000075883    UP000075900    UP000076408    UP000078492    UP000078542    UP000007755    UP000078540    UP000078541    UP000005205    UP000075809    UP000075884    UP000075885    UP000075920    UP000075903    UP000075881    UP000075902    UP000075882    UP000076407    UP000007062    UP000075840    UP000076502    UP000037069    UP000007798    UP000095301    UP000008792    UP000009192    UP000092553    UP000007801    UP000095300    UP000008711    UP000268350    UP000001819    UP000008744    UP000192221    UP000002282    UP000001292   

PRIDE

Q1HQ51    H9JNF9    Q4V6R8   

Pfam

PF01423   LSM

Interpro

IPR010920   LSM_dom_sf        + More
IPR001163   LSM_dom_euk/arc       
IPR034104   Lsm1       

SUPFAM

SSF50182   SSF50182       

CDD

cd01728  LSm1

ProteinModelPortal

Q1HQ51   A0A3S2MAY4   A0A2A4JPX3   A0A2W1BV98   A0A0N1IBU3   I4DKE1   + More
A0A2H1VYC2   A0A0L7L8H1   S4PDA2   A0A212EQ38   H9JNF9   A0A1E1WST2   A0A1Y1N6W9   A0A0L7RK61   K7J9P3   V9IL93   A0A088AQN3   A0A0C9R6G9   A0A067R7S7   A0A2J7QCJ0   N6TSW2   A0A2A3EGX0   A0A182GUR6   A0A1B6GJ98   E2B862   A0A023EG51   A0A1Q3G367   Q17P42   A0A1L8DGM8   A0A1B6MSM3   B0WRR5   A0A1B0DGC5   A0A1B6L6G9   A0A0K8TPD1   D7EI70   A0A2M3ZD33   A0A2M4AYL9   A0A2M4C360   W5J1H3   A0A182FQP5   A0A069DPD0   A0A0V0G929   E0VYP1   T1GW79   A0A084VQL0   A0A182J522   A0A0P4VP74   R4FL32   Q4V6R8   A0A023FAS4   A0A336LP47   A0A2R7WMS2   U5EWI4   A0A0T6AZF8   A0A182QB70   E2ARW6   A0A0A9XH16   A0A1B6DJZ1   A0A182LX64   A0A182R8V5   A0A182Y3Q0   A0A195EJI4   A0A151ILB4   F4X418   A0A195BGV0   A0A195FM71   A0A158NJL6   A0A151X6I3   A0A182NRX0   E9JC43   A0A182PSL9   A0A182VZJ1   A0A182US35   A0A182JZH7   A0A182TE41   A0A182LA02   A0A182WSQ2   Q7PY05   A0A182HLK4   T1DNB8   A0A154NZF6   A0A0L0BUI5   B4MNX6   A0A0K8VZK0   A0A034V1C6   A0A1I8NGT4   A0A0A1WI70   B4LMQ7   B4KNC1   A0A0M3QUM0   B3MDT1   W8BVL5   A0A1I8PGW4   B3NJP1   A0A3B0JTK9   Q28X08   B4H4V3   A0A1W4UMK3   B4P9G6   B4I7L2  

PDB

4C92     E-value=9.41682e-18,     Score=214

KEGG

100037420    K12620 U6 snRNA-associated Sm-like protein LSm1 | (RefSeq) LSM1-like protein

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:1990726   GO:0000932   GO:0000339   GO:0006397   GO:0000290   GO:0003723   GO:0016070   GO:0033962   GO:0004386   GO:0000956  

Subcellular location

Cytoplasm  
P-body  

Length:

138

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0065

Exp number, first 60 AAs:

0.0065

Total prob of N-in:

0.10615

outside

1  -  138

 

 

Pi

176.723463

Theta

162.486924

Tajima's D

0.446628

CLR

0.391834

CSRT

0.501824908754562

Interpretation

Uncertain