SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13623
Pre Gene Modal
BGIBMGA011043
Annotation
Docking_protein_3_[Operophtera_brumata]
Location in the cell
Nuclear   Reliability : 4.425
 

Sequence

CDS
ATGGAACAAGACGATGAGATCAAATCCGGTTGTTTACTATTTCCCCCTGCAGGTGGAAATGTGTTTAGCAAATTTCCAAAAAAGAAAACTTGGCAACAAAAATATTGCATACTTTTCAATGCCAGCAAACAGGGTATTGAAAGGCTCGAAATATACGATAGTAAGGACGAAGTCCCCACTGGTGCCATACCGAAAATAATAACGCTCGAGAATTGCATAAAAATAACTCATTCTAGTCCAAATACTATAACAATACTTACAAAATCTGCTACACAACAAGTATGTGCGCCATCTGAACCTGAAACATTGGAGTGGGTTACAGCATTGCAATCGGTGGCTTTTAGAGGTAGAGATTCCAATCCTATAAGTTGTGATGAAGACAATGATCTCTACTGTTCCTCTGGCGAGGGTATATTCTCAGTAAAAATGTGTACATCAGATGCATCAACAAGATGTGGTTTTGAGCCCATTAGATATCTACTTCTTCTTACATCCATTGCCATAGAGTTGAGAGACGTAAATGATAACAAGTTGTATGCTACGTGGCCATACCGATATATAAGGAGATATGGATATAGACAGGGTAAATTTACTTTTGAAGCTGGAAGGAAATGTGATACTGGTGAGGGCATCTTTCACTTGGAGCATCCTAATCAATCAGAAATATATAAATGTTTATCATTAAAAATGAAAACGATGAAACAGATGATTGGTAGTGAAAATTTGAATAGCCCAGAACACAGTGAATTTAATATTCAATCCAGTGCAAATCTATTTCCTGGTTCGAGAAGTCCATTGGTGGCTGCAAGACCAGATGATTTAAATTTGAGTTCTCTGTCTTTTAAAACAACATCAGTATCAAGTCAGCAGAGTATTTGCACTGAGAGAGATATAGTGCCTTTATTAATGCCGAAACCAGCTCTTAAACCCAAACCACAGAAACCGCCGCGTAAGATTATCAACCTTCTTAAACCAGTAAATAAGGAAGTAAACAGTAATGATGAATGTACAGATTTTGGTAGATATAAGAAACTTGACAACTACGAGCCTATCGATCAAGTGAAACGAGATCTTAGCCCCACAGTGCCATATGACAAAGTAGAAGTACGCAGTGAAGCATGGAGAACATTTGGAATTGAAGATCCAGATCACCAAGAATTTGCACCTAACCTGAGTGATAGTTCACAATGCTTAAAACTAATATCAAGATCACAGGACAACTTGAACAGTACTGGAGCAGAATCTTCAAGAATCATCCTCCTACCTAGTCCTGCTGTAGATCCTGAAGATGAAAACTACGATAGATTGCAATACTTTGGTTCTACAAGTAAGTTGAATAAGTCTTCAGGCTATAAAAAAATCGAAGCCCGTCCCACTACGTTGACTTTGAGTGAGGCCAAACATAAAGATACGTGGAATGATTATGACGAAGTTGAAAATGTGATGCAAACAGCAAGATTGGCTGATGATTCTCACTTAGGGTATGGCATGATCAGAAAGCCTAATACTCCTGGTCCGCAAGTGCCAACTGCAGCTCAGGTACAAGTCTTACAGAACCAAGTAGGTTTGGATGAAGTAAACCACAACAATTGTAATGGAACAGACTATGCTATTGTGAGCCGTTCAAAACGAGTATGA
Protein
MEQDDEIKSGCLLFPPAGGNVFSKFPKKKTWQQKYCILFNASKQGIERLEIYDSKDEVPTGAIPKIITLENCIKITHSSPNTITILTKSATQQVCAPSEPETLEWVTALQSVAFRGRDSNPISCDEDNDLYCSSGEGIFSVKMCTSDASTRCGFEPIRYLLLLTSIAIELRDVNDNKLYATWPYRYIRRYGYRQGKFTFEAGRKCDTGEGIFHLEHPNQSEIYKCLSLKMKTMKQMIGSENLNSPEHSEFNIQSSANLFPGSRSPLVAARPDDLNLSSLSFKTTSVSSQQSICTERDIVPLLMPKPALKPKPQKPPRKIINLLKPVNKEVNSNDECTDFGRYKKLDNYEPIDQVKRDLSPTVPYDKVEVRSEAWRTFGIEDPDHQEFAPNLSDSSQCLKLISRSQDNLNSTGAESSRIILLPSPAVDPEDENYDRLQYFGSTSKLNKSSGYKKIEARPTTLTLSEAKHKDTWNDYDEVENVMQTARLADDSHLGYGMIRKPNTPGPQVPTAAQVQVLQNQVGLDEVNHNNCNGTDYAIVSRSKRV

Summary

Pfam
PF02174   IRS        + More
PF00169   PH
Interpro
IPR002404   IRS_PTB        + More
IPR001849   PH_domain       
IPR011993   PH-like_dom_sf       
IPR016024   ARM-type_fold       
IPR024146   Claspin       
SUPFAM
SSF48371   SSF48371       
Gene 3D
PDB
2DLW     E-value=0.000190674,     Score=108

Ontologies

Topology

Length:
545
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0029
Exp number, first 60 AAs:
0.00213
Total prob of N-in:
0.00232
outside
1  -  545
 
 

Population Genetic Test Statistics

Pi
157.373996
Theta
164.20254
Tajima's D
-0.712566
CLR
328.361305
CSRT
0.197490125493725
Interpretation
Uncertain
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