Gene

KWMTBOMO13621  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011044

Annotation

PREDICTED:_MMS19_nucleotide_excision_repair_protein_homolog_[Bombyx_mori]

Location

Bomo_Chr23(-):3340518-3349161      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.516 PlasmaMembrane   Reliability : 1.653

CDS

ATGAATTCGATTTGGTTCAAGCCTGAACTTGCGGAGGAAATAATAAATAACAATGAAATATTTGATCAAACGCAAAATGTAGTTACTGATATAATAACTCAACATATAGACCTAATAACTTTAGTTGAAAACATGGAGGGTATTTTAACCAATAAAGAACCAGAAAGTCGTGAAAAAGGAATGAGATTCTTCACAAAAATCCTCACAGAGCTACCGAGAGACTATTTAACTGTGTCACAAGTTAAATTCATATCAAAATTTTATATTGACCGGTTAAAAGATAATCATAGAGTAATACCGGCAGTCTTACAAGGTTTTTCAGCTATTATTGAAATGAAGAATTATGATATGGAAACTAGTGGAGAGTTTTTTTCGTTGCTTTTCAGAGAGGTTAATTGTCAGTCCCAAACAAGACAGGATCGGTATAATATTTATTTTATTGTTAAGAAGTTGATGGAAAAAGATATAAAATATATGAAATCTCTTGGTCCAGATTTCGTATATGGTTTCATAGCATCAATGGATGGAGAGAGAGATCCGAGTAACCTGATCTTTCTCTTTAATTTCCTACCAGAATTCATACGTGAAATACCATTGGGGCATTTAGTCGAGGAAATGTTTGAAGTTATTTCATGTTATTACCCTATTGATTTTCATCCTGCTCCTGATGACCCAGCACCGGTTACAAGGCAGGATTTGGCTACAGCTTTAAGTCCTTGTTTGTGTGCAATACCAGAATTTGCGGAACATTGCTTGGTCTTATTGGTTGAGAAGTTAGATTCAAGTTTAAGGTTGGCCAAACTTGATTCATTGAGACTATTGACGGATAGTTGTAAAATTTTCAAACCTGAATCATACACTCCATTTCTGAAAACATTATGGTCATCAATCCAAAGGGAAATATCACACAAAGCCGACGAAGAACTGAAATTTGCGGCACACGAGGCCTTATCCGCTTTAGTGTCAATACTATCAAGGACTGCTAACACAGACCAAGCATTCGAAAATTTCGTCAAAGGAATCCTTATATCCATGCAAACAGCTGTTGCGGAAGCCACCACTGTAGCCCAATTTGTACATGCAACCAAAGTTCTACTAACAGCTGCGAATGGTTCCAAAGAATCATGTGCTATAATAACCAAAAGCATGATACCGGCAATATTAGCTTATTACGATTTTAAAACGTCTCCAAAATTGCAGATCGCTAGTCTGGACTTTTTAGGGGATCTGTATGATTTGGCCAAACATTGGGATGTATTGGAACAAACAGCGGTTCAAGTCAATGAATTACCGCAGTTGTGTTTGACGGTTGTCAGTCAACCGATTAAAGATTTCCAAGTTGCCGGCTTTAGAACATTAATTAGAGTTATGAATGTTTTACAAACAGACCTTGTAGTGCCTTTTGTTGAGGTCTTAATGTATAATGTTCAACATTCTCAAGACGATGAACTCTTGAAAGTCAGCATTGAGACTATTCACGCAATAGCGAAAAAATATCCAGAAATAATAATGCAGCTGCTTGTCACAGGAAGATGTGATATAGAAAATTTGACGCAAGACAAAACTGCTTTGATCAAAAGACTGAATTTGCTCTCCAATTTAGCCAGTATCGATGAATTCACTAAAGTAATCATAGAGGAAATGTTAAAGGTGGTGTCAGCGCATGACGAAGAGGCTCCTAAAGTGATTGAAGCTTTGAGCGAATCAATGTCAGATATAAGTTTGTTTACAGAGAAAAAAATAACTGAAATTGATAGTGATCATGGCTTGGTGGACTCAGTTGTTGAATGGATATTAAGAGAGATAAATAATTCGGTGGATGTGTCAAATGGTTTTGTTTTAATTGCTAATACAATTGCAAGCTTACCAGCTGATAAACAAAGAAATTTACTAGCAAAACATACAGATAATATATTAGACAAATGTAAATATAATGATAAATATTATTTAATTTTAGAAAGTTTGTACATATCTGTTCATCAGACCGTATATGAATCGAGTTTTGATGATATAATGAAGCTATCTCTAAAGTTAGCTTTGAATAGTGAATTGGACAGCGTCAGAACGAAAGCTTGTATTTTAGTGGCACATTTTCTTAACAAAGCTGAATTTGGTCAGAAGTTTGAGCTTTTTTATGAATTATTAAAGAATTATTTGACGAATTGTAGTAAAGATGATGAGGAGTTGTGTCCTAAGTTGATTCTGTTATATGGATGGATTACAAAAGCTTTGATTTTAAGAGGCAGCGATACATTTCTGTTTTGGCTCCAAAAGATTGTAAATACATTATCCAATACACAATACAGTAAACAAGGATCTGAAGCTATCAAACTGATAATGTCTGACAGCCCTAATTATTTATCGAGCAGGCAACACTGCCGGACCAGTTTATTGTACAGGCAAAGAATGTTCCAGAATTTCGCGAAGCTAACCCACAAGTTACCGCCTCTAGAAGGTGCAGCGAATGAATCGTATCTTCTTAGTTGGGCCTATGTATTTGAGAAGACTCCGAAAAGTGTACTTAATAATGAGACTACAAAGATTACATCAATAGCGATAGATTCGTTAAATTATGAAAACAACGACTTACTCCTTGTGATGATCGATGTTTTATGTTATTTCGTGCAAGCGAAAAACGCCGTTATCTCTGGCAGCTTACAGACCATTTTACCGAGACTAGTGAAATTGTCTAGATACGTCAAATCAATGGATGTCAGAATTAAAAGTTTAGAATGCCTTTACGAGATTGCGAATTCGTATCGCACGTCAACGCTTTTGCCGCACAAACAGGACATTTTATTTGATTTAGCGCCATCTCTTGACGACAAAAAGAGGCTGGTACGCAACATGGCCGTCAAAGCAAGAACCCGCTGGTTCATGATTGGTGCCCCAGGCGAAGATAAACCTAATTAA

Protein

MNSIWFKPELAEEIINNNEIFDQTQNVVTDIITQHIDLITLVENMEGILTNKEPESREKGMRFFTKILTELPRDYLTVSQVKFISKFYIDRLKDNHRVIPAVLQGFSAIIEMKNYDMETSGEFFSLLFREVNCQSQTRQDRYNIYFIVKKLMEKDIKYMKSLGPDFVYGFIASMDGERDPSNLIFLFNFLPEFIREIPLGHLVEEMFEVISCYYPIDFHPAPDDPAPVTRQDLATALSPCLCAIPEFAEHCLVLLVEKLDSSLRLAKLDSLRLLTDSCKIFKPESYTPFLKTLWSSIQREISHKADEELKFAAHEALSALVSILSRTANTDQAFENFVKGILISMQTAVAEATTVAQFVHATKVLLTAANGSKESCAIITKSMIPAILAYYDFKTSPKLQIASLDFLGDLYDLAKHWDVLEQTAVQVNELPQLCLTVVSQPIKDFQVAGFRTLIRVMNVLQTDLVVPFVEVLMYNVQHSQDDELLKVSIETIHAIAKKYPEIIMQLLVTGRCDIENLTQDKTALIKRLNLLSNLASIDEFTKVIIEEMLKVVSAHDEEAPKVIEALSESMSDISLFTEKKITEIDSDHGLVDSVVEWILREINNSVDVSNGFVLIANTIASLPADKQRNLLAKHTDNILDKCKYNDKYYLILESLYISVHQTVYESSFDDIMKLSLKLALNSELDSVRTKACILVAHFLNKAEFGQKFELFYELLKNYLTNCSKDDEELCPKLILLYGWITKALILRGSDTFLFWLQKIVNTLSNTQYSKQGSEAIKLIMSDSPNYLSSRQHCRTSLLYRQRMFQNFAKLTHKLPPLEGAANESYLLSWAYVFEKTPKSVLNNETTKITSIAIDSLNYENNDLLLVMIDVLCYFVQAKNAVISGSLQTILPRLVKLSRYVKSMDVRIKSLECLYEIANSYRTSTLLPHKQDILFDLAPSLDDKKRLVRNMAVKARTRWFMIGAPGEDKPN

Uniprot

H9JNE1   A0A212EQ45   A0A2W1BSR6   A0A2A4JPZ9   A0A3S2LW56   A0A2H1WCH8   + More
A0A0N1IDI7   A0A194PRB1   A0A0L7L8Z2   A0A1E1WAF7   A0A2H1VAZ4   A0A154PUE5   A0A067QVT6   A0A158N9N8   A0A195BNM1   A0A151ICZ8   A0A151ISQ5   E9J0W8   A0A2J7QSK0   A0A310SB92   A0A151XGK7   A0A195F8E4   A0A3L8D5C0   A0A0L7QYI0   A0A026WVN6   A0A088AF50   A0A2A3EUI6   A0A1Y1KIG8   E2A8P5   A0A1Q3F9A7   E0VJ45   A0A139WB11   Q17PB8   A0A1B6CXX0   A0A182UZU0   A0A182F716   A0A023EZ35   A0A2H8TWM0   C3ZS73   Q7QAT5   A0A069DZM7   W5JWB8   A0A182KXE7   A0A0V0G8H7   A0A1Y9GKQ4   A0A093BVP3   G5C0C2   A0A0N8ET16   J9JVN1   B5DY60   S7NR34   B4GFF0   A0A182P0D0   U4TY21   A0A2U3WKV1   A0A3Q7Q2P5   L5MD67   M3WIU4   A0A286XQD2   A0A2I3HCH7   A0A2Y9I2P6   A0A3Q7R7Z2   A0A1Q3F9X0   T1JH66   A0A1L8DFY2   B0WIW2   A0A2Y9HWD4   A0A1B6E614   A0A146M2B1   A0A182GVT8   A0A1B6DBI5   H2ZLN5   A0A0R3NP90   A0A177WIF9   A0A1W7R865  

Pubmed

19121390    22118469    28756777    26354079    26227816    24845553    + More
21347285    21282665    30249741    24508170    28004739    20798317    20566863    18362917    19820115    17510324    25474469    18563158    12364791    14747013    17210077    26334808    20920257    23761445    20966253    21993625    15632085    17994087    23537049    17975172    21993624    26823975    26483478   

EMBL

BABH01019268    BABH01019269    BABH01019270    AGBW02013317    OWR43615.1    KZ149986    + More
PZC75686.1    NWSH01000935    PCG73480.1    RSAL01000002    RVE55022.1    RVE55075.1    ODYU01007732    SOQ50770.1    KQ461153    KPJ08662.1    KQ459595    KPI95847.1    JTDY01002247    KOB71804.1    GDQN01007203    JAT83851.1    ODYU01001591    SOQ38018.1    KQ435180    KZC14978.1    KK853313    KDR08628.1    ADTU01009725    KQ976428    KYM87824.1    KQ977991    KYM98284.1    KQ981064    KYN09884.1    GL767538    EFZ13553.1    NEVH01011876    PNF31560.1    KQ765222    OAD54066.1    KQ982169    KYQ59533.1    KQ981727    KYN36651.1    QOIP01000014    RLU15048.1    KQ414688    KOC63670.1    KK107083    EZA60082.1    KZ288185    PBC34876.1    GEZM01082862    JAV61243.1    GL437663    EFN70124.1    GFDL01010881    JAV24164.1    DS235219    EEB13401.1    KQ971379    KYB25099.1    CH477193    EAT48513.1    GEDC01019123    GEDC01017690    JAS18175.1    JAS19608.1    GBBI01004716    JAC13996.1    GFXV01006505    MBW18310.1    GG666671    EEN44605.1    AAAB01008888    EAA08941.4    GBGD01000370    JAC88519.1    ADMH02000081    ETN67873.1    GECL01001798    JAP04326.1    APCN01005504    KL228399    KFV04042.1    JH172633    EHB14975.1    GEBF01005635    JAN97997.1    ABLF02031944    ABLF02031946    ABLF02031949    CM000070    EDY68327.1    KE164716    EPQ19706.1    CH479182    EDW34335.1    KB631815    ERL86514.1    KB102330    ELK35683.1    AANG04000273    AAKN02002748    ADFV01163141    ADFV01163142    ADFV01163143    ADFV01163144    GFDL01010726    JAV24319.1    JH432222    GFDF01008797    JAV05287.1    DS231953    EDS28788.1    GEDC01011665    GEDC01003935    JAS25633.1    JAS33363.1    GDHC01005899    JAQ12730.1    JXUM01002527    JXUM01002528    JXUM01002529    KQ560140    KXJ84218.1    GEDC01027695    GEDC01014245    JAS09603.1    JAS23053.1    KRT00832.1    DS022302    OAJ39280.1    GEHC01000304    JAV47341.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000283053    UP000053240    UP000053268    + More
UP000037510    UP000076502    UP000027135    UP000005205    UP000078540    UP000078542    UP000078492    UP000235965    UP000075809    UP000078541    UP000279307    UP000053825    UP000053097    UP000005203    UP000242457    UP000000311    UP000009046    UP000007266    UP000008820    UP000075903    UP000069272    UP000001554    UP000007062    UP000000673    UP000075882    UP000075840    UP000006813    UP000007819    UP000001819    UP000008744    UP000075885    UP000030742    UP000245340    UP000286641    UP000011712    UP000005447    UP000001073    UP000248481    UP000002320    UP000069940    UP000249989    UP000007875    UP000077115   

PRIDE

H9JNE1   

Pfam

PF12460   MMS19_C        + More
PF14500   MMS19_N
PF02493   MORN
PF03200   Glyco_hydro_63
PF16923   Glyco_hydro_63N
PF04142   Nuc_sug_transp
PF06027   SLC35F
PF12719   Cnd3

Interpro

IPR016024   ARM-type_fold        + More
IPR039920   MET18/MMS19       
IPR024687   MMS19_C       
IPR029240   MMS19_N       
IPR011989   ARM-like       
IPR003409   MORN       
IPR031335   Glyco_hydro_63_C       
IPR008928   6-hairpin_glycosidase_sf       
IPR012341   6hp_glycosidase-like_sf       
IPR038518   Glyco_hydro_63N_sf       
IPR031631   Glyco_hydro_63N       
IPR004888   Glycoside_hydrolase_63       
IPR007271   Nuc_sug_transpt       
IPR009262   SLC35_F1/F2/F6       
IPR025977   Cnd3_C       

SUPFAM

SSF48371   SSF48371        + More
SSF48208   SSF48208       

Gene 3D

1.25.10.10     1.50.10.10     2.70.98.110    

ProteinModelPortal

H9JNE1   A0A212EQ45   A0A2W1BSR6   A0A2A4JPZ9   A0A3S2LW56   A0A2H1WCH8   + More
A0A0N1IDI7   A0A194PRB1   A0A0L7L8Z2   A0A1E1WAF7   A0A2H1VAZ4   A0A154PUE5   A0A067QVT6   A0A158N9N8   A0A195BNM1   A0A151ICZ8   A0A151ISQ5   E9J0W8   A0A2J7QSK0   A0A310SB92   A0A151XGK7   A0A195F8E4   A0A3L8D5C0   A0A0L7QYI0   A0A026WVN6   A0A088AF50   A0A2A3EUI6   A0A1Y1KIG8   E2A8P5   A0A1Q3F9A7   E0VJ45   A0A139WB11   Q17PB8   A0A1B6CXX0   A0A182UZU0   A0A182F716   A0A023EZ35   A0A2H8TWM0   C3ZS73   Q7QAT5   A0A069DZM7   W5JWB8   A0A182KXE7   A0A0V0G8H7   A0A1Y9GKQ4   A0A093BVP3   G5C0C2   A0A0N8ET16   J9JVN1   B5DY60   S7NR34   B4GFF0   A0A182P0D0   U4TY21   A0A2U3WKV1   A0A3Q7Q2P5   L5MD67   M3WIU4   A0A286XQD2   A0A2I3HCH7   A0A2Y9I2P6   A0A3Q7R7Z2   A0A1Q3F9X0   T1JH66   A0A1L8DFY2   B0WIW2   A0A2Y9HWD4   A0A1B6E614   A0A146M2B1   A0A182GVT8   A0A1B6DBI5   H2ZLN5   A0A0R3NP90   A0A177WIF9   A0A1W7R865  

KEGG

101746081    K15075 DNA repair/transcription protein MET18/MMS19 | (RefSeq) MMS19 nucleotide excision repair prot

GO

GO:0097428   GO:0005789   GO:0009311   GO:0016021   GO:0006487   GO:0004573   GO:0000139   GO:0015165   GO:0007059   GO:0045893   GO:0016226   GO:0006281   GO:0071817   GO:1905168   GO:0097361   GO:0022857   GO:0005654   GO:0019899   GO:0003713   GO:0030331   GO:0005488   GO:0019509   GO:0046872   GO:0006508   GO:0008237   GO:0008152   GO:0016787   GO:0003676   GO:0016491   GO:0015930  

PANTHER

PTHR12891   PTHR10412  

Length:

970

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03243

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00010

outside

1  -  970

 

 

Pi

249.50041

Theta

48.025214

Tajima's D

0.679698

CLR

1.463172

CSRT

0.56317184140793

Interpretation

Uncertain