Gene

KWMTBOMO13616

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr23(-):3116962-3119981      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.089

CDS

ATGGTCAGGAACGACAGGCTCTCTGCTCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCGCTCGATCCTCCCGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGCATGGGGAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCGTTAGTCGATGATCTCGCCTTCGATATCGTCGCTCCGCTAACACCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGAGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTTAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCGACTCCGTTCCCGTCACAAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTACCCCGTCTCCTCAGGATACCACTGAAGCCATAGACATCTTAACGTCACACATCACCTCAACATTAGATAGATCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGATGATATTAGGGAACTCCTTAAAGCTAAGAACGCCTCGATACGCGCCTACGATAGGTTAGCCGTTGGAGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCTATACAGAAATACATGAAGTCAGCGTCGGAACGGTACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTAGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCACTAGACGCCTTCAGCTCTAGGAGCAGGCTTAGGGACCTCGGTAACCGTACTCGTCGAACTCGACAAAGAGTTCGCCGTGCAACCTAA

Protein

MVRNDRLSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLSLHSIEVVSELDLDHRPVVMKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSTPSPQDTTEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLKAKNASIRAYDRLAVGAPWFVRNVDLHDDLGLESIQKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSRSRLRDLGNRTRRTRQRVRRAT

Subunit

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.

Similarity

Belongs to the histone H2A family.

Uniprot

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A1B6MLS9   A0A1B6MIM7   A0A2J7PRP5   A0A0L7L3F7   J9LVT4   J9KR26   A0A224XB44   J9L3W3   A0A224XJI0   A0A2S2QEE0   A0A2S2PJ52   A0A087UGF5   A0A087U3K8   J9LPH9   A0A087T3W0   J9LK81  

Pubmed

10333566    26354079    10380107    28004739    26227816   

EMBL

U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GEBQ01003077    JAT36900.1    GEBQ01004157    JAT35820.1    NEVH01021955    PNF19000.1    JTDY01003188    KOB69997.1    ABLF02003241    ABLF02003242    ABLF02025904    ABLF02003895    ABLF02006045    ABLF02035991    ABLF02066257    GFTR01008262    JAW08164.1    ABLF02019661    GFTR01008257    JAW08169.1    GGMS01006359    MBY75562.1    GGMR01016297    MBY28916.1    KK119692    KFM76444.1    KK118005    KFM71947.1    ABLF02009591    ABLF02009592    ABLF02009594    ABLF02066703    KK113281    KFM59799.1    ABLF02023551    ABLF02023561   

Proteomes

UP000053268    UP000235965    UP000037510    UP000007819    UP000054359   

PRIDE

Q93137    Q9BPQ0    Q9XXW0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF16211   Histone_H2A_C
PF00125   Histone
PF05699   Dimer_Tnp_hAT
PF14291   DUF4371

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR032458   Histone_H2A_CS       
IPR002119   Histone_H2A       
IPR032454   Histone_H2A_C       
IPR007125   Histone_H2A/H2B/H3       
IPR009072   Histone-fold       
IPR025398   DUF4371       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
IPR006580   Znf_TTF       
IPR036397   RNaseH_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF47113   SSF47113       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     1.10.20.10     3.30.420.10    

CDD

cd00074  H2A

ProteinModelPortal

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A1B6MLS9   A0A1B6MIM7   A0A2J7PRP5   A0A0L7L3F7   J9LVT4   J9KR26   A0A224XB44   J9L3W3   A0A224XJI0   A0A2S2QEE0   A0A2S2PJ52   A0A087UGF5   A0A087U3K8   J9LPH9   A0A087T3W0   J9LK81  

KEGG

101737297    no KO assigned | (RefSeq) esterase FE4-like

GO

GO:0003964   GO:0004519   GO:0046982   GO:0000786   GO:0003677   GO:0005634   GO:0046983   GO:0016021   GO:0003676  

Subcellular location

Chromosome  
Nucleus  

Length:

372

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07666

Exp number, first 60 AAs:

0.05283

Total prob of N-in:

0.12635

outside

1  -  372

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0.429101

CSRT

0

Interpretation

Uncertain