Gene

KWMTBOMO13602

Pre Gene Modal

BGIBMGA010957

Annotation

PREDICTED:_lipoma-preferred_partner_homolog_[Papilio_machaon]

Location

Bomo_Chr23(-):2538876-2541513      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.512 Nuclear   Reliability : 2.061

CDS

ATGAACACTCTGGACAAACAATTAGCAGATTTACGAATATACGCAAACGAGCTTGATGCAAAGCTTCAAGATGACATAAATCACGCAAAACAGAAACCTTCCCTACCGCCGAAAAGAAATAAGGCGCCGCTGCCTCAAATACCCCAGAGCTATACTGTAAAATCGGCTTGCGAGCCCTCCTACTCCTCGAGACTTGAATATGGCAGTCAGCGAAGTTCTACATACTCAAACTTAGTACCCGTGAAGAGTTTTATAGTTAGGAACAACACTGGGCGGATGCGGAGCGGTGATGTACTTCTATACAGCAATCTCTTACCTCCGGGAGGCACCAACCATGTGTATTCAAACGTTATGATGCAACGTGCTTACGGCGGAGACAGCATTTACGATAGGGGCTCTGAAGTGTCCAGGATAAGTGATTTGGGTGCTCAGTCTAATTACAGTGAATTAAGACGACCGGGATCCGCGTATCCGCCGTCTTCTGCTTCCGTCAATGCACAGGATTTCTCTACTTATGGTGGCTCTCAAACTTCGTCCACATATGAATCTTTATATGAACCTATAAACCCAAGACCTTGCAGCCAACTATCAGGCACTTCGATGTATGCTGGCTATGTAGCAACTGCTGAGCCGACTCCAGAACCAGACGATGCTCTGTACTGTGGGAATTGTTACAAGTGTGGTGAGAAAATCATGGGAGAAACCACTGGATGTACCGCAATGGAGAGAATCTACCATATCAAGTGTTTCTGTTGTCAACAGTGTGGGATAAATTTACAGGGCCGACCTTTCTATGCTGTTCAAGGACGAGCTCTTTGTGAACGAGACTACTTGGAAACCCTTGAGAAGTGCTGTGTATGTGGAGATCCAATCCTAGACCGCATCTTGCGAGCTACAGGCAAACCCTACCATCCTCGCTGTTTTACTTGTGTGGTGTGTCAAAAAAGTTTAGATGGAATCCCATTTACTGTGGATGCTGTGAACCGTATCCATTGCATTGAAGACTTTCATAAAAGATATGCTCCCCGGTGTGCGAGGTGTCGTGAGCCCATAGTACCTGAAGGTGGAACTGAAGAGACAGTACGTATCGTCGCTCTAGACAAGAGCTTCCATGTAGCATGTTATTCCTGTGAAGATTGCGGGGCGTCATTGTGCTCGCGACAGGAAGGTCGTGGATGCTATCCGCTTGACAACCATTTGTATTGCAAAGAATGTAATGCAAGAAGGATTCAAGATCTATCTAGAAATATTAGTTAA

Protein

MNTLDKQLADLRIYANELDAKLQDDINHAKQKPSLPPKRNKAPLPQIPQSYTVKSACEPSYSSRLEYGSQRSSTYSNLVPVKSFIVRNNTGRMRSGDVLLYSNLLPPGGTNHVYSNVMMQRAYGGDSIYDRGSEVSRISDLGAQSNYSELRRPGSAYPPSSASVNAQDFSTYGGSQTSSTYESLYEPINPRPCSQLSGTSMYAGYVATAEPTPEPDDALYCGNCYKCGEKIMGETTGCTAMERIYHIKCFCCQQCGINLQGRPFYAVQGRALCERDYLETLEKCCVCGDPILDRILRATGKPYHPRCFTCVVCQKSLDGIPFTVDAVNRIHCIEDFHKRYAPRCARCREPIVPEGGTEETVRIVALDKSFHVACYSCEDCGASLCSRQEGRGCYPLDNHLYCKECNARRIQDLSRNIS

Uniprot

H9JN54   A0A0N1IDI0   A0A194PQY4   A0A3S2PLR4   A0A2H1WZ52   A0A2W1BV09   + More
A0A2A4JAP8   A0A212EYP3   D2A3T5   A0A1Y1MR98   E0VNM2   S4NY13   A0A2A4K5Z5   A0A2H1V5H7   A0A194QEV7   A0A1B6DVF7   V5GKM8   A0A0V0G9Q6   A0A069DTQ5   T1H9J0   A0A1W4XMI9   A0A1E1W6Y1   A0A224XPZ5   A0A023F380   A0A0L7L412   A0A2Z5U7Z0   A0A0A9XTN0   A0A212FGX6   T1JE70  

Pubmed

19121390    26354079    28756777    22118469    18362917    19820115    + More
28004739    20566863    23622113    26334808    25474469    26227816    25401762    26823975   

EMBL

BABH01033324    KQ461153    KPJ08646.1    KQ459595    KPI95861.1    RSAL01000002    + More
RVE55010.1    RVE55063.1    ODYU01012190    SOQ58365.1    KZ149909    PZC78201.1    NWSH01002102    PCG69187.1    AGBW02011467    OWR46600.1    KQ971348    EFA05566.2    GEZM01023896    JAV88159.1    DS235340    EEB14978.1    GAIX01013980    JAA78580.1    NWSH01000136    PCG79193.1    ODYU01000592    SOQ35642.1    KQ459053    KPJ03954.1    GEDC01031088    GEDC01007657    JAS06210.1    JAS29641.1    GALX01003832    JAB64634.1    GECL01001536    JAP04588.1    GBGD01001431    JAC87458.1    ACPB03022132    GDQN01008298    GDQN01004232    JAT82756.1    JAT86822.1    GFTR01006357    JAW10069.1    GBBI01003009    JAC15703.1    JTDY01003160    KOB70039.1    AP017509    BBB06821.1    GBHO01023114    GDHC01008073    JAG20490.1    JAQ10556.1    AGBW02008579    OWR53001.1    JH432116   

Proteomes

UP000005204    UP000053240    UP000053268    UP000283053    UP000218220    UP000007151    + More
UP000007266    UP000009046    UP000015103    UP000192223    UP000037510   

PRIDE

H9JN54   

Pfam

PF00412   LIM        + More
PF08941   USP8_interact

Interpro

IPR001781   Znf_LIM        + More
IPR001841   Znf_RING       
IPR015036   NRDP1       
IPR013083   Znf_RING/FYVE/PHD       
IPR037255   NRDP1_C       
IPR003613   Ubox_domain       
IPR017907   Znf_RING_CS       
IPR008974   TRAF-like       

SUPFAM

SSF49599   SSF49599        + More
SSF160088   SSF160088       

Gene 3D

3.30.40.10    

ProteinModelPortal

H9JN54   A0A0N1IDI0   A0A194PQY4   A0A3S2PLR4   A0A2H1WZ52   A0A2W1BV09   + More
A0A2A4JAP8   A0A212EYP3   D2A3T5   A0A1Y1MR98   E0VNM2   S4NY13   A0A2A4K5Z5   A0A2H1V5H7   A0A194QEV7   A0A1B6DVF7   V5GKM8   A0A0V0G9Q6   A0A069DTQ5   T1H9J0   A0A1W4XMI9   A0A1E1W6Y1   A0A224XPZ5   A0A023F380   A0A0L7L412   A0A2Z5U7Z0   A0A0A9XTN0   A0A212FGX6   T1JE70  

PDB

2DLO     E-value=2.31318e-22,     Score=261

KEGG

101743219    K16676 lipoma-prefererred partner | (RefSeq) lipoma-preferred partner homolog

PATHWAY

04391    Hippo signaling pathway - fly - Bombyx mori (domestic silkworm)

GO

GO:0046872   GO:0001725   GO:0098609   GO:0005925   GO:0061630   GO:0008270   GO:0006810   GO:0006520   GO:0006508   GO:0008237   GO:0008152   GO:0016787   GO:0003676   GO:0016491   GO:0015930  

Length:

418

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02264

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01135

outside

1  -  418

 

 

Pi

216.050785

Theta

169.752416

Tajima's D

0.696907

CLR

0.099477

CSRT

0.572521373931303

Interpretation

Uncertain