Gene

KWMTBOMO13595

Pre Gene Modal

BGIBMGA012804

Annotation

PREDICTED:_nucleic-acid-binding_protein_from_mobile_element_jockey-like_[Papilio_machaon]

Location

Bomo_Chr23(+):2477674-2479235      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.504

CDS

ATGAAGTTAAACCCCTTAAAAAACCCTCAACCACAACACAAACAGCTTACTCAACAAGCACTCCTTCCAGGCTTGTTTGACAGACAACGTTCGTCATCTCTTTCTGACCTGGGAAGGTCACCACAAGACACGACCAATGTAGAGCAACCAAATGTAGCCAGTATCGCACCAGTAGCAACCTTGCTGGAAGATATTCCTCAACCCCCTGCTCCTCCACCATGGCAAAGGGTACAATCACCCAATAGCAGAAGCAGTAAGAAAAGAAAGTACTCCAGTTCCTCACCAGAGGCCCCAAGTACCACCGTGAAAAACCGCTTCAGCACCTTACCTTTAGACGCAACGGATGAACCATGTACTACCGACCGCCCTAAACCCAGCAAACCTCCACCTATAGTCCTCAATGGTATAGAAGATGTTACAGAGCTATCGAAGCTCCTTCAAACCGTCAGCAGCAAAGATGATTTCAAATTTAAACTAATTAATAAAAACCTACTCCATATTCTGGTTAACAATGCTGAGGAGTATAAGAAAATCATAGCGGTAATAAGAGCAAATGGACTCATAGGACACACATTCACCCCTAAAGACATCAAATGCTATCGCATTGTCATAAAAGACCTCCACCACAGCACACCCCATGAAGCGATAACAGAAGCCATTGAGGCAACTAACAATAAAATTAAAGGCGAAATCATCAATGCACGTTACGGACCCGACAAGAAACCTACATCTACTTTCTTTGTAAACATTGAGCCTAGTGTAAATAACCCTGCAGCCAAGAATATAACTCATATATTTAACCAAAAGGTCAAGATAGAGGATCCTCGCAAATCAAAAAGTATTGTTCAATGTCAACGTTGTCAGCGCTACGGTCACTCGAAAAATAACTGTATGAGACCATATAGGTGCGTTAAATGCGGTGAGGGTCACAAAACCTCGGAGTGCCAAAAGAAAGATAGAACCACACCAGCTAAATGCGCTCTCTGCTTGTGTGATCACCCGGCTAACTACAAAGGCTGCGAAATTTACAAGGAAATCCTTGCCCGAAGAAACAAAAACTTTACTCCAAGAGAAAGACAACCCGCTCTAGCTATCACAGCCTTGCCCATTAATCCAATCAGCTCCATATCGACAAAAACTGAAGGTATCGAAAGACCAACTCACCAACGAACTTATGCTGAAGTCGCTGATGGAAGGAATTCCCAATCTAATCAACAATCCTACAACAAACTGGAAAACATCCTACTTAAACAAAGTGAGAAAATGGACCTCCTATTACAACAAATAGGCTCCTTAGTGAGTCTTATTACTTCTCTCGTCTCCAAGCTTCTAAAATGA

Protein

MKLNPLKNPQPQHKQLTQQALLPGLFDRQRSSSLSDLGRSPQDTTNVEQPNVASIAPVATLLEDIPQPPAPPPWQRVQSPNSRSSKKRKYSSSSPEAPSTTVKNRFSTLPLDATDEPCTTDRPKPSKPPPIVLNGIEDVTELSKLLQTVSSKDDFKFKLINKNLLHILVNNAEEYKKIIAVIRANGLIGHTFTPKDIKCYRIVIKDLHHSTPHEAITEAIEATNNKIKGEIINARYGPDKKPTSTFFVNIEPSVNNPAAKNITHIFNQKVKIEDPRKSKSIVQCQRCQRYGHSKNNCMRPYRCVKCGEGHKTSECQKKDRTTPAKCALCLCDHPANYKGCEIYKEILARRNKNFTPRERQPALAITALPINPISSISTKTEGIERPTHQRTYAEVADGRNSQSNQQSYNKLENILLKQSEKMDLLLQQIGSLVSLITSLVSKLLK

Uniprot

H9JTE2   A0A194RK46   A0A2J7QGW8   A0A2J7QDG6   A0A1B0CK87   A0A0J7KKG5   + More
A0A2A4J8Z7   A0A2S2R608   A0A1Y1N079   J9KE07   A0A1B0FV55   A0A1B0GHS3   A0A1B0CBY8   A0A1B0CMQ7   A0A2S2PDP3   A0A2S2P6J9   A0A2S2NWV3   X1X7V8   X1X2F5   J9LNE5   A0A1B0DHQ9   X1WQY4   J9LJG0   A0A0J7KTN8   A0A2S2NQE0   A0A2S2Q8X5   A0A224XT32   X1WK76   A0A2S2NXZ1   J9LNL0   X1X088   A0A1B0CRN6   A0A2S2R8S1   A0A2S2QG05   J9L3V2   A0A0J7MYU4   A0A2S2P9D3  

Pubmed

19121390    26354079    28004739   

EMBL

BABH01004047    BABH01004048    BABH01004049    BABH01004050    KQ460118    KPJ17710.1    + More
NEVH01014359    PNF27827.1    NEVH01015822    PNF26627.1    AJWK01015895    LBMM01006314    KMQ90711.1    NWSH01002380    PCG68431.1    GGMS01016195    MBY85398.1    GEZM01016225    GEZM01016224    GEZM01016223    JAV91321.1    ABLF02024784    ABLF02024792    AJWK01010384    AJWK01005577    AJWK01005997    AJWK01019099    GGMR01014893    MBY27512.1    GGMR01012472    MBY25091.1    GGMR01009090    MBY21709.1    ABLF02017573    ABLF02054931    ABLF02024857    ABLF02059360    ABLF02001804    ABLF02035179    ABLF02062794    AJVK01061445    ABLF02042106    ABLF02016540    LBMM01003300    KMQ93691.1    GGMR01006776    MBY19395.1    GGMS01004984    MBY74187.1    GFTR01005305    JAW11121.1    ABLF02035261    ABLF02035909    ABLF02066026    GGMR01009313    MBY21932.1    ABLF02018955    ABLF02041521    AJWK01025019    GGMS01017182    MBY86385.1    GGMS01007463    MBY76666.1    ABLF02025592    LBMM01013507    KMQ85610.1    GGMR01013395    MBY26014.1   

Proteomes

UP000005204    UP000053240    UP000235965    UP000092461    UP000036403    UP000218220    + More
UP000007819    UP000092462   

PRIDE

H9JTE2   

Pfam

PF07530   PRE_C2HC        + More
PF02036   SCP2
PF00628   PHD
PF00078   RVT_1
PF14529   Exo_endo_phos_2

Interpro

IPR006579   Pre_C2HC_dom        + More
IPR036527   SCP2_sterol-bd_dom_sf       
IPR039543   POX18/YhbT/NSL-TP1       
IPR003033   SCP2_sterol-bd_dom       
IPR019786   Zinc_finger_PHD-type_CS       
IPR011011   Znf_FYVE_PHD       
IPR001965   Znf_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR019787   Znf_PHD-finger       
IPR000477   RT_dom       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR035979   RBD_domain_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF55718   SSF55718        + More
SSF57903   SSF57903       
SSF56219   SSF56219       
SSF54928   SSF54928       
SSF57756   SSF57756       

Gene 3D

3.30.1050.10     3.30.40.10     3.60.10.10    

ProteinModelPortal

H9JTE2   A0A194RK46   A0A2J7QGW8   A0A2J7QDG6   A0A1B0CK87   A0A0J7KKG5   + More
A0A2A4J8Z7   A0A2S2R608   A0A1Y1N079   J9KE07   A0A1B0FV55   A0A1B0GHS3   A0A1B0CBY8   A0A1B0CMQ7   A0A2S2PDP3   A0A2S2P6J9   A0A2S2NWV3   X1X7V8   X1X2F5   J9LNE5   A0A1B0DHQ9   X1WQY4   J9LJG0   A0A0J7KTN8   A0A2S2NQE0   A0A2S2Q8X5   A0A224XT32   X1WK76   A0A2S2NXZ1   J9LNL0   X1X088   A0A1B0CRN6   A0A2S2R8S1   A0A2S2QG05   J9L3V2   A0A0J7MYU4   A0A2S2P9D3  

PDB

5I1R     E-value=0.0134258,     Score=91

KEGG

NA   

GO

GO:0046872   GO:0003676   GO:0008270  

PANTHER

PTHR10094  

Length:

445

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.90163

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00364

outside

1  -  445

 

 

Pi

165.782767

Theta

147.644333

Tajima's D

0.491814

CLR

0

CSRT

0.515274236288186

Interpretation

Uncertain