Gene

KWMTBOMO13586  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010964

Annotation

putative_cysteinyl-tRNA_synthetase_[Operophtera_brumata]

Location

Bomo_Chr23(-):2303638-2305424      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 1.247

CDS

ATGAAGGTTTTTAATTTAACTTTTGTCCGCTCATTATCTCACGTGTGTAGCTTAAAACCTTATAAAGATACAAAATGGCTTATGCCGAATGGAAACCCTACAGGTATTTACGTTTATAATTGTATTGCGAACCAACGGGTGCCAATTATATTAAATGATCCTCACATCGCTACCTGGTATTCTTGTGGCCCCACGGTATACGAATCTGCTCACATAGGTCACGCCAGCTGCTATGTGAAACTCGATATCATACAGAGAATTCTCAAATCGTTCTTCAATATAAAAATCGTCTCCGCTATGGGTATTACGGATATAGACGACAAAATCATTAAGAAAGGCCTCGAAAGTAAAACACACTTCACAAATATTGCTAAACAATATGAGCATGAATTCTGGCTTGATATGGCATCATTGAATGTAGCAAAGCCACTCATCATAACGAGGGTATCGGAACACATTAATAGTATTGAGAAATTCGTACAGAGGCTTATTGATAACGACATGGCTTATGTAAGTAAAAACGGTTCAGTATATTTTGATACCGATAAATTCTCAAACTATGGCAAATTACAAAAAATGCAAGACAGTGGTGAACCATCAGATGATGAAAAAAGAAATAAAATGGACTTTGCTCTTTGGAAAAGTCACAAGCCCGAGGAACCCTATTGGGATACCCCCTGGGGTAAAGGCAGACCTGGCTGGCATATAGAATGTTCTGCAATGGTCAGCAAAGTATTTGGATCACAATTAGACATCCATGCTGGAGGAGTAGATCTACAATTTCCTCATCATGAGAATGAAGAGGCACAATCATGTGCATACCACAATATACGACAGTGGGCTAACTATTGGATTCATGTTGGTCATTTAAATGTTATTGGTGATACCAAAATGTCCAAATCACTACAAAACACTATTTCAATACCTGACTTATTGAAATCATATAATGCAGATACATTCAGAATGGCCTGTTTGTTAACAAACTACAGGTATTCAATGGAATTCAGTAATCAGCTTATGGAAACCGCTGAAAGTGTTTTAAATAAATTTAAGTTTTTCATAACAGATGCTACTATTTATATAAATAACAATGCAACATCGGTTAGTGCCGTTTACTCAGATCACATATTAAAAAACCTACAGAAAACAGAGGAGGCCAATTTTGAAGCTTTGAAAGTAGATTTTGATACAGCAACTTGCATAAATAATTTGTTAACATTACTTTCGGACACAAACAAAATTATAAAATCAGATCCGTGTGAATATTGTCCTGTCCCAGTGACATTGATAGTTGAATACATAGTTGATATTCTTACAAAATTTGGATTGAAACTTCAAGAGAGTGAGGACACTGTTTTATCAAACGCAATGATAAATACTATAGTTGAATTTAGACATTCTGTACGATTGAATGCAATTTCTAGCAAAAACTATGAACTATTGAGCGCATGTGATATTGTCCGTGATAAAATGAAATCAATGAAAGTCCAAATCAATGATAGTCATAAGACTCCATCTTGGGTTATAACCAAATAA

Protein

MKVFNLTFVRSLSHVCSLKPYKDTKWLMPNGNPTGIYVYNCIANQRVPIILNDPHIATWYSCGPTVYESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGITDIDDKIIKKGLESKTHFTNIAKQYEHEFWLDMASLNVAKPLIITRVSEHINSIEKFVQRLIDNDMAYVSKNGSVYFDTDKFSNYGKLQKMQDSGEPSDDEKRNKMDFALWKSHKPEEPYWDTPWGKGRPGWHIECSAMVSKVFGSQLDIHAGGVDLQFPHHENEEAQSCAYHNIRQWANYWIHVGHLNVIGDTKMSKSLQNTISIPDLLKSYNADTFRMACLLTNYRYSMEFSNQLMETAESVLNKFKFFITDATIYINNNATSVSAVYSDHILKNLQKTEEANFEALKVDFDTATCINNLLTLLSDTNKIIKSDPCEYCPVPVTLIVEYIVDILTKFGLKLQESEDTVLSNAMINTIVEFRHSVRLNAISSKNYELLSACDIVRDKMKSMKVQINDSHKTPSWVITK

Uniprot

H9JN61   A0A2H1X2E2   A0A0L7LKD3   A0A2W1BZB6   A0A2A4J4A6   A0A194RF85   + More
A0A194PRD5   A0A212EWB2   A0A2P8ZA35   A0A1I8MXU5   A0A067RIN1   A0A2J7RC01   A0A232F1X2   A0A1I8NVP6   A0A0L0C796   K7IQH2   D6W8J3   A0A1W4WEW8   A0A1B0G7N2   A0A182H972   D3TLF7   A0A1A9V5E2   A0A026WWS4   A0A0K8V664   A0A1A9XP04   A0A336M5S9   A0A1B6CD56   B0WTG9   A0A1B0B7D0   A0A0K8UD83   A0A1A9WIT2   A0A034W6S9   Q16ME8   E2BMJ1   A0A195F027   A0A1B6FV68   B4MY73   A0A158P3M1   A0A3Q1I8M1   A0A182SCK9   A0A146KVK4   A0A195CT17   A0A1B6MK93   Q7K3P0   A0A0A9WHK9   W8C2X8   A0A3P8SIE1   A0A0N0U5T6   A0A3Q1B8A3   A0A182MTA0   A0A182V7J3   A0A3Q3JRJ5   A0A154P344   B3NRC8   B4P6M4   E2ACN0   A0NGR3   E0W311   A0A1S3MUH0   B4HR12   A0A2A3E037   A0A1W4V0A2   A0A182TGT7   A0A3B5AE46   A0A0J9RDL4   A0A1J1J146   A0A151J9F9   A0A3Q2UTB9   A0A1S3JNT9   A0A3B1JSP9   B3MCZ7   I3J750   H2SLN7   A0A369S778   A0A3P9CUF2   B4GDM3   A0A3B4H2E6   A0A3P8P1Y3   F4W4S4   G3PRE2   A0A3B0JP06   A0A3P8XQ55   Q292F2   A0A0C9RGX4   A0A3B4E759   A0A151XGI8   A0A3Q3L7Q0   A0A3B3SA55   A0A3B1JJV1   H3DAG0   B3RYL2   A0A182RYY6   A0A3Q3AXT6   B4JVG9   A0A3P8V7Z8   A0A3Q2DH58   A0A1Y1NHC2   E7FC09   Q4RYA9   A0A182W1W6  

Pubmed

19121390    26227816    28756777    26354079    22118469    29403074    + More
25315136    24845553    28648823    26108605    20075255    18362917    19820115    26483478    20353571    24508170    30249741    25348373    17510324    20798317    17994087    21347285    26823975    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25401762    24495485    17550304    12364791    20566863    22936249    25329095    25186727    21551351    30042472    21719571    25069045    15632085    29240929    15496914    18719581    24487278    28004739    23594743   

EMBL

BABH01033298    ODYU01012883    SOQ59412.1    JTDY01000783    KOB75890.1    KZ149909    + More
PZC78190.1    NWSH01003415    PCG66344.1    KQ460313    KPJ16114.1    KQ459595    KPI95872.1    AGBW02012034    OWR45773.1    PYGN01000131    PSN53354.1    KK852482    KDR22898.1    NEVH01005889    PNF38338.1    NNAY01001276    OXU24523.1    JRES01000803    KNC28268.1    KQ971312    EEZ98366.2    CCAG010016887    JXUM01119994    KQ566346    KXJ70204.1    EZ422259    ADD18535.1    KK107079    QOIP01000010    EZA60151.1    RLU17365.1    GDHF01017890    JAI34424.1    UFQT01000376    SSX23717.1    GEDC01025921    JAS11377.1    DS232085    EDS34407.1    JXJN01009550    GDHF01027715    JAI24599.1    GAKP01008940    JAC50012.1    CH477863    EAT35511.1    GL449233    EFN83100.1    KQ981880    KYN33925.1    GECZ01015846    JAS53923.1    CH963894    EDW77062.2    ADTU01008257    GDHC01019373    JAP99255.1    KQ977304    KYN03790.1    GEBQ01003607    JAT36370.1    AE013599    AY058452    AAF58291.1    AAL13681.1    AHN56203.1    GBHO01036713    GBHO01029512    GBHO01029511    GBHO01029508    GBHO01029507    GBHO01028858    JAG06891.1    JAG14092.1    JAG14093.1    JAG14096.1    JAG14097.1    JAG14746.1    GAMC01000263    JAC06293.1    KQ435756    KOX75932.1    AXCM01000489    KQ434809    KZC06253.1    CH954179    EDV56080.2    CM000158    EDW90976.1    GL438568    EFN68774.1    AAAB01008986    EAU75859.2    DS235881    EEB20017.1    CH480816    EDW47809.1    KZ288507    PBC25135.1    CM002911    KMY93689.1    CVRI01000063    CRL04577.1    KQ979447    KYN21457.1    CH902619    EDV36312.1    AERX01034907    AERX01034908    NOWV01000057    RDD42304.1    CH479181    EDW31680.1    GL887553    EGI70793.1    OUUW01000001    SPP74381.1    CM000071    EAL24910.2    GBYB01012427    JAG82194.1    KQ982174    KYQ59330.1    DS985245    EDV25060.1    CH916375    EDV98437.1    GEZM01003077    GEZM01003076    GEZM01003075    JAV96938.1    BX908780    CAAE01014978    CAG06623.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000053240    UP000053268    UP000007151    + More
UP000245037    UP000095301    UP000027135    UP000235965    UP000215335    UP000095300    UP000037069    UP000002358    UP000007266    UP000192223    UP000092444    UP000069940    UP000249989    UP000078200    UP000053097    UP000279307    UP000092443    UP000002320    UP000092460    UP000091820    UP000008820    UP000008237    UP000078541    UP000007798    UP000005205    UP000265040    UP000075901    UP000078542    UP000000803    UP000265080    UP000053105    UP000257160    UP000075883    UP000075903    UP000261600    UP000076502    UP000008711    UP000002282    UP000000311    UP000007062    UP000009046    UP000087266    UP000001292    UP000242457    UP000192221    UP000075902    UP000261400    UP000183832    UP000078492    UP000264840    UP000085678    UP000018467    UP000007801    UP000005207    UP000005226    UP000253843    UP000265160    UP000008744    UP000261460    UP000265100    UP000007755    UP000007635    UP000268350    UP000265140    UP000001819    UP000261440    UP000075809    UP000261640    UP000261540    UP000007303    UP000009022    UP000075900    UP000264800    UP000001070    UP000265120    UP000265020    UP000000437    UP000075920   

PRIDE

H9JN61    Q7K3P0   

Pfam

PF01406   tRNA-synt_1e        + More
PF09190   DALR_2

Interpro

IPR014729   Rossmann-like_a/b/a_fold        + More
IPR032678   tRNA-synt_1_cat_dom       
IPR015803   Cys-tRNA-ligase       
IPR024909   Cys-tRNA/MSH_ligase       
IPR009080   tRNAsynth_Ia_anticodon-bd       
IPR015273   Cys-tRNA-synt_Ia_DALR       

SUPFAM

SSF47323   SSF47323       

Gene 3D

3.40.50.620    

CDD

cd00672  CysRS_core

ProteinModelPortal

H9JN61   A0A2H1X2E2   A0A0L7LKD3   A0A2W1BZB6   A0A2A4J4A6   A0A194RF85   + More
A0A194PRD5   A0A212EWB2   A0A2P8ZA35   A0A1I8MXU5   A0A067RIN1   A0A2J7RC01   A0A232F1X2   A0A1I8NVP6   A0A0L0C796   K7IQH2   D6W8J3   A0A1W4WEW8   A0A1B0G7N2   A0A182H972   D3TLF7   A0A1A9V5E2   A0A026WWS4   A0A0K8V664   A0A1A9XP04   A0A336M5S9   A0A1B6CD56   B0WTG9   A0A1B0B7D0   A0A0K8UD83   A0A1A9WIT2   A0A034W6S9   Q16ME8   E2BMJ1   A0A195F027   A0A1B6FV68   B4MY73   A0A158P3M1   A0A3Q1I8M1   A0A182SCK9   A0A146KVK4   A0A195CT17   A0A1B6MK93   Q7K3P0   A0A0A9WHK9   W8C2X8   A0A3P8SIE1   A0A0N0U5T6   A0A3Q1B8A3   A0A182MTA0   A0A182V7J3   A0A3Q3JRJ5   A0A154P344   B3NRC8   B4P6M4   E2ACN0   A0NGR3   E0W311   A0A1S3MUH0   B4HR12   A0A2A3E037   A0A1W4V0A2   A0A182TGT7   A0A3B5AE46   A0A0J9RDL4   A0A1J1J146   A0A151J9F9   A0A3Q2UTB9   A0A1S3JNT9   A0A3B1JSP9   B3MCZ7   I3J750   H2SLN7   A0A369S778   A0A3P9CUF2   B4GDM3   A0A3B4H2E6   A0A3P8P1Y3   F4W4S4   G3PRE2   A0A3B0JP06   A0A3P8XQ55   Q292F2   A0A0C9RGX4   A0A3B4E759   A0A151XGI8   A0A3Q3L7Q0   A0A3B3SA55   A0A3B1JJV1   H3DAG0   B3RYL2   A0A182RYY6   A0A3Q3AXT6   B4JVG9   A0A3P8V7Z8   A0A3Q2DH58   A0A1Y1NHC2   E7FC09   Q4RYA9   A0A182W1W6  

PDB

3TQO     E-value=4.94275e-62,     Score=604

KEGG

101741861    K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] | (RefSeq) probable cysteine--tRNA ligase, mitochondr

PATHWAY

00970    Aminoacyl-tRNA biosynthesis - Bombyx mori (domestic silkworm)

GO

GO:0006423   GO:0005524   GO:0004817   GO:0005737   GO:0005739   GO:0021828   GO:0000166   GO:0004812   GO:0006418   GO:0030145   GO:0003676   GO:0016491   GO:0015930  

PANTHER

PTHR10890  

Length:

511

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01209

Exp number, first 60 AAs:

0.00173

Total prob of N-in:

0.00233

outside

1  -  511

 

 

Pi

229.360099

Theta

170.081026

Tajima's D

-0.791315

CLR

0.983305

CSRT

0.180240987950602

Interpretation

Uncertain