Silkworm Genome Informatics Database

Gene

KWMTBOMO13581

Pre Gene Modal

BGIBMGA000058

Annotation

putative_helentron_5_helitron-like_transposon_replicase/helicase/endonuclease_[Danaus_plexippus]

Location

Bomo_Chr23(+):2232545-2234340 View in EpiBrowser

Full name

ATP-dependent DNA helicase

Location in the cell

Nuclear Reliability : 2.789

CDS

ATGAAACTGCTACACAACGAAAAAGAAGGCTCGAAAAGGCAAAAGAAAAGTATAGAACGAAACGTGCAAAGGAAAGTGAAAATAAAACCCACAGTTGACTACAGAAACGAAGAGAACGCACAACGTGAGAGACAAAGGCAGCTGGTAGAGTCAGAAACACCTGAGCGTCATGAGTGCAGGCTAGCATCACAACGTGACAGACGAAGAGAGCTAATAGCGTCAGAAACACCCGAGCGTCATGAGTCCAGGCTAGCATCACAACGTGACAGACAAAGAGAGTTGTTAGCATCAGAAACATCTGAGCGTCATGAGTCTAGGCTAGCACCACAACGTGACAGACGAAGACAGCTAATAGCGTCAGAAACACTTGAGCGTCATGAGTCCAGGCTAAGATTACAACGTAACAGACAAATAGAGCTATTAGCGTCAGAAACACCTGAGCAACATGAGGCCAGGTTAACAGGACGGCGTGAGAGACGAAAGGAGCTAGAAGCTTCAGAAACACCTGAGCAACGCCACGACAGGTTAAATAACCAACGTGAGCGTGCACAGCAACGCAGAGCTGAAAATCATGTACAAGCGTTTGAAAATGCCATTAACACATCGTGTATACACGCGTACTGGAATAATCTGGATCCAGGTTCAATACCAGATGAGATTCAAGCGCTGACGCAAGCAGAGCAGCGATTGCTGTGTAGAATCATCCCGCTTGTTAAAATCGTAAAATTTACTGGGCTATACGGGCAGTACGGTTTCCGCGGACAAGCAGTGTTGTTTGCCCAAGATATCTTTGAGGTCAGTGAAAGATTACCTAATATGCTTCCAAGATCTTCCAGCCAGGTGGGTATCGTTGTAGTTACAGAACGTTTGGAGAATTTGAACATCACAAGAGAGTTCACAATATCTCGCGAAAAATTCTACAGCGCTTTAAGATGGTTAACTAGAAATAACCCACTTTATAGAGATGTACGCATTGACGAAAATGTCCAGATTAGTGAACAAGACTTAATACGACTTAGTGTGCCAGATATACCTGAAAACGGTGAACCTGAAAGAATTGAAATTCCAAATGTATTCATTAGTATTAATGACGTTGCTAGAATTATTCGGGCTTCATGGCATCAAGGTGACCACAGCGTTTTCACTTCGGGATTTGCCGGCGTGCAATGTAATGGCATGCACGTTATTTACCCTAAAGCCATACAGTTTCCAGCAAAATTCAATTATGGTACAGCTGAAAGAAGGATGTTGCCCTTAGTTTTGTCATGGGCATCCACCGTCCATAAAATGCAGGGCAGCACCGTCGACCATGCAGTAGTATATTTGGGCTCAAAATTGTTTGAGGAAGGACAAGCATACGTGGCTCTAAGTCGAGTCAAGTCTCTGGAAGAGCTATCTATGTATTTAGGAATTAGATTGTACTAA

Protein

MKLLHNEKEGSKRQKKSIERNVQRKVKIKPTVDYRNEENAQRERQRQLVESETPERHECRLASQRDRRRELIASETPERHESRLASQRDRQRELLASETSERHESRLAPQRDRRRQLIASETLERHESRLRLQRNRQIELLASETPEQHEARLTGRRERRKELEASETPEQRHDRLNNQRERAQQRRAENHVQAFENAINTSCIHAYWNNLDPGSIPDEIQALTQAEQRLLCRIIPLVKIVKFTGLYGQYGFRGQAVLFAQDIFEVSERLPNMLPRSSSQVGIVVVTERLENLNITREFTISREKFYSALRWLTRNNPLYRDVRIDENVQISEQDLIRLSVPDIPENGEPERIEIPNVFISINDVARIIRASWHQGDHSVFTSGFAGVQCNGMHVIYPKAIQFPAKFNYGTAERRMLPLVLSWASTVHKMQGSTVDHAVVYLGSKLFEEGQAYVALSRVKSLEELSMYLGIRLY

Catalytic Activity

ATP + H2O = ADP + H(+) + phosphate

Cofactor

Mg(2+)

Similarity

Belongs to the helicase family.

Uniprot

A0A2W1BWA4 A0A2H1W907 A0A2A4JK85 U9ULI3 A0A015K5V9 A0A2H5THL4 + More
A0A2H5SLU0

EC Number

3.6.4.12

Pubmed

28756777

EMBL

KZ149899 PZC78621.1 ODYU01007095 SOQ49558.1 NWSH01001203 PCG72138.1 + More
KI281041 ESA16461.1 JEMT01012642 EXX74990.1 BDIQ01000130 GBC42052.1 BDIQ01000095 GBC31309.1

Proteomes

UP000218220 UP000022910 UP000236242

Pfam

PF14214 Helitron_like_N + More
PF05970 PIF1

Interpro

IPR010285   DNA_helicase_pif1-like        + More
IPR025476   Helitron_helicase-like
IPR027417   P-loop_NTPase

SUPFAM

SSF52540 SSF52540

ProteinModelPortal

A0A2W1BWA4 A0A2H1W907 A0A2A4JK85 U9ULI3 A0A015K5V9 A0A2H5THL4 + More
A0A2H5SLU0

PDB

6HPU E-value=1.11386e-07, Score=135

KEGG

NA

GO

GO:0006310 GO:0000723 GO:0006281 GO:0005524 GO:0003678 GO:0004386

Length:

474

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0363000000000002

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00407

outside

1 - 474

Pi

485.795148

Theta

198.716185

Tajima's D

4.726648

CLR

0

CSRT

0.999950002499875

Interpretation

Possibly Balancing Selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics