Gene

KWMTBOMO13577

Pre Gene Modal

BGIBMGA001382

Annotation

PREDICTED:_serum_response_factor_homolog_[Papilio_xuthus]

Location

Bomo_Chr23(-):2152285-2181944      View in EpiBrowser

Transcription factor

SRF

Location in the cell

Nuclear   Reliability : 4.54

CDS

ATGGACGCGCCCGGCGGAGCGCGGGAGTCCCGCTTCGGGCCGTCTTACATGGGGTTGTTGGGGGAGATGCCGGACATGTACAGCGCGGGCAGGCCTCCGAGCGCGCTCGGCGGTGCTGGCCCCTTGCGGCCCGGCATGCAACCTTGCCCGATGCCCAGGGCTGGAGTCAAACGTCCATCGGACCAGTGCTACGATGATAGACCATCACAAAGCGTTCCCCTCGACCACTGCCCAATGCCGGACATAGCTGATGATGGTTATGCCTCCCTGCAACCCAAGAAGTCACCCCCTTCTAATGGCAAAAAGACTAAAGGTCGCGTCAAGATCAAAATGGAGTATATAGATAATAAACTGCGACGGTACACAACTTTCTCCAAGCGGAAGACTGGGATTATGAAGAAGGCATACGAGCTATCCACTTTGACGGGGACACAAGTGATGTTGCTGGTCGCGTCGGAGACCGGCCACGTGTATACGTTCGCGACGCGGAAACTTCAGCCCATGATCACGTCCGATTCTGGGAAAAGGCTGATCCAGACGTGCCTTAACTCACCAGACCCGCCCACGACCAGCGAACAGCGCATGGCGGCTACTGGCTTCGAGGAGACCGAGCTCACGTATAACGTTGTAGACGAGGATATGAAGGTGAGGCAATTGGCATACGCGGGCACCGCGCAGTACCCTATAGAGCACCATCCAGGGCTGGCCCCGTCGCCGCTGCAGCAGTACCATCAGCACCCACCCTGTCCGTCACCGCTGCCCCTCAGCTCGCTGGGGCAGCCCTATTCTCACGCTCATCTATCTCACCCCCACATGTCGCATCATCCTCAGCGGTAG

Protein

MDAPGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQRMAATGFEETELTYNVVDEDMKVRQLAYAGTAQYPIEHHPGLAPSPLQQYHQHPPCPSPLPLSSLGQPYSHAHLSHPHMSHHPQR

Uniprot

A0A2A4JMP3   A0A212EI12   A0A2W1BSY0   A0A0H3UYK2   A0A1Y1LB27   C0KZ12   + More
D6WCK0   A0A1L8DI72   V5IA35   E0VYQ3   A0A1Y1LC57   A0A067R4V2   A0A1S3DVS1   A0A0A9ZAQ6   A0A2A3EB75   A0A154PQ61   A0A310SMG9   A0A2J7PQE2   A0A0L7R2V5   A0A146M887   A0A1I8M8Y2   A0A146LKN9   A0A0K8T2J3   A0A1W4WAC6   A0A146KVU2   A0A0A9YH03   A0A0N0U405   A0A0K8T2Y2   A0A0L0CF08   A0A1B6LRR8   A0A1B6G2L2   A0A088A7B8   A0A0P5IMP3   A0A0P5HK91   A0A0D6DQH9   A0A1I8M8X5   A0A0P5UPT6   A0A0P5E600   T1PH56   A0A0P4XLQ3   A0A0C9R2T8   A0A158NTW2   A0A195FPH9   A0A1B6LY53   A0A1B6K564   A0A195CTS3   A0A0P4ZDE2   A0A0C9RPV3   A0A0P5SNK0   A0A0P6DHQ9   A0A0P4Z8X3   A0A2S2P4J6   A0A0P5D142  

Pubmed

22118469    28756777    28004739    18362917    19820115    20566863    + More
24845553    25401762    26823975    25315136    26108605    21347285   

EMBL

NWSH01001086    PCG72703.1    AGBW02014734    OWR41122.1    KZ149909    PZC78182.1    + More
KJ158242    AIZ67912.1    GEZM01063287    JAV69135.1    FJ647802    ACN43332.1    KQ971311    EEZ99037.2    GFDF01007951    JAV06133.1    GALX01001875    JAB66591.1    DS235846    EEB18509.1    GEZM01063286    JAV69136.1    KK852747    KDR17235.1    GBHO01002105    GBRD01006068    JAG41499.1    JAG59753.1    KZ288296    PBC28940.1    KQ435012    KZC13857.1    KQ762343    OAD55936.1    NEVH01022638    PNF18552.1    KQ414664    KOC65210.1    GDHC01003849    JAQ14780.1    GDHC01010610    JAQ08019.1    GBRD01006069    JAG59752.1    GDHC01018018    JAQ00611.1    GBHO01012698    GBRD01006067    JAG30906.1    JAG59754.1    KQ435866    KOX70294.1    GBRD01006070    GDHC01005615    JAG59751.1    JAQ13014.1    JRES01000476    KNC30983.1    GEBQ01013611    JAT26366.1    GECZ01013094    JAS56675.1    GDIQ01210551    JAK41174.1    GDIQ01228284    JAK23441.1    HF912428    CCV01216.1    GDIQ01103184    GDIP01127488    JAL48542.1    JAL76226.1    GDIP01151099    JAJ72303.1    KA648106    AFP62735.1    GDIP01240792    JAI82609.1    GBYB01010519    JAG80286.1    ADTU01026164    ADTU01026165    KQ981382    KYN42306.1    GEBQ01011348    JAT28629.1    GECU01001403    JAT06304.1    KQ977279    KYN04093.1    GDIP01214234    JAJ09168.1    GBYB01010520    JAG80287.1    GDIP01137489    LRGB01000781    JAL66225.1    KZS15922.1    GDIQ01080401    JAN14336.1    GDIP01216082    JAJ07320.1    GGMR01011519    MBY24138.1    GDIP01164336    JAJ59066.1   

Proteomes

UP000218220    UP000007151    UP000007266    UP000009046    UP000027135    UP000079169    + More
UP000242457    UP000076502    UP000235965    UP000053825    UP000095301    UP000192223    UP000053105    UP000037069    UP000005203    UP000005205    UP000078541    UP000078542    UP000076858   

Pfam

PF00319   SRF-TF

Interpro

IPR036879   TF_MADSbox_sf        + More
IPR033897   MADS_SRF-like       
IPR002100   TF_MADSbox       

SUPFAM

SSF55455   SSF55455       

Gene 3D

3.40.1810.10    

CDD

cd00266  MADS_SRF_like

ProteinModelPortal

A0A2A4JMP3   A0A212EI12   A0A2W1BSY0   A0A0H3UYK2   A0A1Y1LB27   C0KZ12   + More
D6WCK0   A0A1L8DI72   V5IA35   E0VYQ3   A0A1Y1LC57   A0A067R4V2   A0A1S3DVS1   A0A0A9ZAQ6   A0A2A3EB75   A0A154PQ61   A0A310SMG9   A0A2J7PQE2   A0A0L7R2V5   A0A146M887   A0A1I8M8Y2   A0A146LKN9   A0A0K8T2J3   A0A1W4WAC6   A0A146KVU2   A0A0A9YH03   A0A0N0U405   A0A0K8T2Y2   A0A0L0CF08   A0A1B6LRR8   A0A1B6G2L2   A0A088A7B8   A0A0P5IMP3   A0A0P5HK91   A0A0D6DQH9   A0A1I8M8X5   A0A0P5UPT6   A0A0P5E600   T1PH56   A0A0P4XLQ3   A0A0C9R2T8   A0A158NTW2   A0A195FPH9   A0A1B6LY53   A0A1B6K564   A0A195CTS3   A0A0P4ZDE2   A0A0C9RPV3   A0A0P5SNK0   A0A0P6DHQ9   A0A0P4Z8X3   A0A2S2P4J6   A0A0P5D142  

PDB

1SRS     E-value=2.01813e-39,     Score=406

KEGG

101744587    K04378 serum response factor | (RefSeq) serum response factor homolog

GO

GO:0005634   GO:0046983   GO:0000987   GO:0000981   GO:0045944   GO:0008134   GO:0007275   GO:0043565   GO:0044212   GO:0003677   GO:0005887   GO:0016907   GO:0019538   GO:0030145   GO:0003676   GO:0016491   GO:0015930  

Subcellular location

Nucleus  

Length:

278

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.29635

Exp number, first 60 AAs:

0.00328

Total prob of N-in:

0.03049

outside

1  -  278

 

 

Pi

318.439255

Theta

203.128507

Tajima's D

1.348008

CLR

0.196753

CSRT

0.749562521873906

Interpretation

Uncertain