SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13570
Annotation
reverse_transcriptase_[Danaus_plexippus]
Location in the cell
Mitochondrial   Reliability : 1.28 Peroxisomal   Reliability : 1.193 PlasmaMembrane   Reliability : 1.19
 

Sequence

CDS
ATGTCTATCTTTTCATCGTGGAGGACGGGCAGACTTGTGCTGTTGAGAAAGGAGGGGCGCCCGGCGGATACTGCCGCCGGGTACCGTCCCATCGTGTTGTTGGATGAGGTGGGCAAACTGCTGGAACGCATTCTGGCAGCCCGCATCATCCAGCATCTGATCGGGGTGGGACCCGATCTGTCGGCGGAGCAGTATGGCTTCCGAGAGGGCCGCTCAACGGTGGACGCGATCCTTCGCGTGCGGGCCCTCTCGGAGGAGGCCGTCTGTGGGGGTGGGGTGGCCTTGGCGGTGTCGCTTGACATCGCCAATGCGTTTAACACCCTGCCCTGGTCCGTGATAGGGGGGGCGCTGGAAAGACACGGAGTGCCCCTCTACCTTCGCCGGCTGGTCGGCTCCTACTTGGAGAACAGATCGGTCACGTGTACCGGACACGATGGGATCGTACATCGGTTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTACTCGGCCCTCTTTTGTGGAATATCGGGTATGACTGGGTGCTGAGGGGTGCCCTCCTCCCGGGCCTAAGCGTAATATGTTACGCAGACGACACGCTGGTCGTGGCCCGGGGAGGGAGCTTTGCTGAGTCTGCTCGTCTTGCCACCGCTGGGGTAGCGCATGTCGTCGGCAAAATCAGGAGATTGGGCCTCGACGTGGCGCTCAGTAAATCCGAGGCCATGTGGTTCCACAGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGGATCGGGGTCGGGGTGCAGTTAAAGTACCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGCACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTTCTGCCCAACGTCGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACGGGGGTGGTGCGATCAATGGCCCTATACGGGGCACCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTAGCGAAGTTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCTTTTGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTCCTGGAGGCGGAGGCGCTCGCCGCTGACTATCAGTGGCGAGCTAACCTTCGTGCCCGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGGCATGGTCCAGGCGGCTGGCCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGATTCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCGGAGCCGAGCCGACGGCAGAGTGCTACCATTGTGGTTGCGACTTGGACACGGCGGAGCATACGCTCGTTGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAAACGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCAGCGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAAGCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATCTCGCCCTAGCCCTGGCCCTCTAA
Protein
MSIFSSWRTGRLVLLRKEGRPADTAAGYRPIVLLDEVGKLLERILAARIIQHLIGVGPDLSAEQYGFREGRSTVDAILRVRALSEEAVCGGGVALAVSLDIANAFNTLPWSVIGGALERHGVPLYLRRLVGSYLENRSVTCTGHDGIVHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGSFAESARLATAGVAHVVGKIRRLGLDVALSKSEAMWFHRPRRVPPVDAHIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQHLVPRLLGVAGALSRLLPNVGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRANLRARGVARPSPSVVRARRAQSRRSVLEAWSRRLADPSAGRRTVEAIRPILVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGAEPTAECYHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGNDLSLPSVVASMLGSDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAGAREADLALALAL

Summary

EMBL
AB090825    BAC57926.1    AB078935    BAC06462.1    AB078931    BAC06456.1    + More
AB078930    BAC06454.1    AB078929    BAC06452.1    KZ149896    PZC78733.1    LBMM01012027    KMQ86470.1    D85594    BAA19776.1    RSAL01000481    RVE41577.1    LBMM01006954    KMQ90166.1    LBMM01005707    KMQ91279.1    LBMM01006671    KMQ90407.1    LBMM01005733    KMQ91252.1    LBMM01006657    KMQ90417.1    LBMM01006063    KMQ90967.1    LBMM01004272    KMQ92618.1    LBMM01002052    KMQ95336.1    LBMM01008682    KMQ88705.1    LBMM01019839    KMQ83438.1    LBMM01019838    KMQ83439.1    LBMM01007036    KMQ90099.1    LBMM01005948    KMQ91066.1    RSAL01003504    RVE40273.1    LBMM01003245    KMQ93755.1    LBMM01004634    KMQ92224.1    LBMM01015018    KMQ84954.1    LBMM01002480    KMQ94776.1    LBMM01008422    KMQ88894.1    LBMM01003988    KMQ92922.1    LBMM01015025    KMQ84953.1    LBMM01007425    KMQ89740.1    LBMM01008448    KMQ88867.1    LBMM01006725    KMQ90373.1    LBMM01004505    KMQ92346.1    LBMM01012412    KMQ86235.1    LBMM01014122    KMQ85315.1    GGMR01014195    MBY26814.1    LBMM01008278    KMQ89009.1    GGMR01000779    MBY13398.1    KMQ94772.1    LBMM01005465    KMQ91492.1    LBMM01005474    KMQ91485.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    LBMM01014956    KMQ84982.1    ABLF02011238    LBMM01003575    KMQ93366.1    GGMR01015159    MBY27778.1    GFXV01002090    MBW13895.1    GGMR01004600    MBY17219.1    LBMM01005216    KMQ91703.1    ABLF02034925    ABLF02041886    LBMM01004262    KMQ92649.1    ABLF02013358    ABLF02013361    ABLF02054869    GGFJ01001727    MBW50868.1    ABLF02009991    ABLF02009992    ABLF02054952    LBMM01004261    KMQ92650.1    GGFJ01001369    MBW50510.1    GFXV01003903    MBW15708.1    GGMR01006838    MBY19457.1    GGMR01011682    MBY24301.1    ABLF02005203    ABLF02041316    GGMR01015354    MBY27973.1    GGFJ01001370    MBW50511.1    ABLF02004674    ABLF02004675    ABLF02004676    ABLF02011637    KU543683    AMS38371.1    GGFJ01001439    MBW50580.1    ABLF02004854    ABLF02041317    GGMR01009778    MBY22397.1    GALX01004785    JAB63681.1    LBMM01021647    KMQ83033.1    ABLF02011183    ABLF02041884    LBMM01015285    KMQ84870.1    KQ971309    EEZ99146.1    GGFL01004044    MBW68222.1    ABLF02018808    APGK01005465    KB736249    ENN83233.1    GAKP01002292    JAC56660.1    LBMM01013668    KMQ85535.1    ABLF02018942    ABLF02041885    GGFL01001583    MBW65761.1    ABLF02004597    ABLF02041324    HACL01000281    CFW94575.1    ABLF02023257    GALA01001777    JAA93075.1    ABLF02014650    ABLF02041557    ABLF02016340    GBXI01013438    JAD00854.1   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF07776   zf-AD
PF00096   zf-C2H2
PF01421   Reprolysin
PF00098   zf-CCHC
PF13966   zf-RVT
PF12017   Tnp_P_element
Interpro
IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR026960   RVT-Znf       
IPR021896   Transposase_37       
SUPFAM
SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       
Gene 3D
PDB
6AR3     E-value=1.42192e-05,     Score=118

Ontologies

Topology

Length:
571
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.256960000000001
Exp number, first 60 AAs:
0.00052
Total prob of N-in:
0.00574
outside
1  -  571
 
 

Population Genetic Test Statistics

Pi
3.69887
Theta
3.772008
Tajima's D
2.46469
CLR
0
CSRT
0.951402429878506
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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