Gene

KWMTBOMO13570

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr23(-):1740027-1741875      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.28 Peroxisomal   Reliability : 1.193 PlasmaMembrane   Reliability : 1.19

CDS

ATGTCTATCTTTTCATCGTGGAGGACGGGCAGACTTGTGCTGTTGAGAAAGGAGGGGCGCCCGGCGGATACTGCCGCCGGGTACCGTCCCATCGTGTTGTTGGATGAGGTGGGCAAACTGCTGGAACGCATTCTGGCAGCCCGCATCATCCAGCATCTGATCGGGGTGGGACCCGATCTGTCGGCGGAGCAGTATGGCTTCCGAGAGGGCCGCTCAACGGTGGACGCGATCCTTCGCGTGCGGGCCCTCTCGGAGGAGGCCGTCTGTGGGGGTGGGGTGGCCTTGGCGGTGTCGCTTGACATCGCCAATGCGTTTAACACCCTGCCCTGGTCCGTGATAGGGGGGGCGCTGGAAAGACACGGAGTGCCCCTCTACCTTCGCCGGCTGGTCGGCTCCTACTTGGAGAACAGATCGGTCACGTGTACCGGACACGATGGGATCGTACATCGGTTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTACTCGGCCCTCTTTTGTGGAATATCGGGTATGACTGGGTGCTGAGGGGTGCCCTCCTCCCGGGCCTAAGCGTAATATGTTACGCAGACGACACGCTGGTCGTGGCCCGGGGAGGGAGCTTTGCTGAGTCTGCTCGTCTTGCCACCGCTGGGGTAGCGCATGTCGTCGGCAAAATCAGGAGATTGGGCCTCGACGTGGCGCTCAGTAAATCCGAGGCCATGTGGTTCCACAGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGGATCGGGGTCGGGGTGCAGTTAAAGTACCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGCACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTTCTGCCCAACGTCGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACGGGGGTGGTGCGATCAATGGCCCTATACGGGGCACCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTAGCGAAGTTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCTTTTGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTCCTGGAGGCGGAGGCGCTCGCCGCTGACTATCAGTGGCGAGCTAACCTTCGTGCCCGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGGCATGGTCCAGGCGGCTGGCCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGATTCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCGGAGCCGAGCCGACGGCAGAGTGCTACCATTGTGGTTGCGACTTGGACACGGCGGAGCATACGCTCGTTGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAAACGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCAGCGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAAGCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATCTCGCCCTAGCCCTGGCCCTCTAA

Protein

MSIFSSWRTGRLVLLRKEGRPADTAAGYRPIVLLDEVGKLLERILAARIIQHLIGVGPDLSAEQYGFREGRSTVDAILRVRALSEEAVCGGGVALAVSLDIANAFNTLPWSVIGGALERHGVPLYLRRLVGSYLENRSVTCTGHDGIVHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGSFAESARLATAGVAHVVGKIRRLGLDVALSKSEAMWFHRPRRVPPVDAHIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQHLVPRLLGVAGALSRLLPNVGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRANLRARGVARPSPSVVRARRAQSRRSVLEAWSRRLADPSAGRRTVEAIRPILVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGAEPTAECYHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGNDLSLPSVVASMLGSDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAGAREADLALALAL

Uniprot

Q868Q4   Q8MY27   Q8MY31   Q8MY33   Q8MY35   A0A2W1C3J5   + More
A0A0J7N1D9   O01419   A0A3S2N998   A0A0J7KIY5   A0A0J7KM11   A0A0J7KJG6   A0A0J7KLT9   A0A0J7KJH4   A0A0J7KL06   A0A0J7KQK3   A0A0J7KYD2   A0A0J7N7S8   A0A0J7JZ13   A0A0J7JZF7   A0A0J7KIM6   A0A0J7KLH8   A0A3S2LNH8   A0A0J7NMN5   A0A0J7KPR0   A0A0J7K3R6   A0A0J7KWU5   A0A0J7KF40   A0A0J7KRB8   A0A0J7K3F1   A0A0J7NAV8   A0A0J7KF37   A0A0J7KIW1   A0A0J7KPZ3   A0A0J7N0R3   A0A0J7MY17   A0A2S2PBP5   A0A0J7KFH2   A0A2S2N8I2   A0A0J7KW81   A0A0J7KMG5   A0A0J7NFZ0   J9LJ80   A0A0J7K3R2   X1WJY4   A0A0J7KSR8   A0A2S2PEZ7   A0A2H8TIE5   A0A2S2NJ82   A0A0J7KMU1   J9LVU7   J9KJG8   A0A0J7KQY4   J9JWJ3   A0A2M4BDI3   J9KPP8   A0A0J7NJI3   A0A2M4BBV9   A0A2H8TR36   A0A2S2NQQ6   A0A2S2P488   J9KNG8   A0A2S2PEU2   A0A2M4BC01   J9KV04   A0A142LX45   A0A2M4BC28   X1WXT5   A0A2S2NYY3   V5I8F3   A0A0J7JXX4   X1WZ64   A0A0J7MWN5   D6WC19   A0A2M4CS98   J9KNS1   N6TYN9   A0A034WR48   A0A0J7MYL9   J9KM84   A0A2M4CKQ7   X1WSG8   A0A0E3W2C5   J9KNN8   T1DCM0   J9LM37   J9KUM6   X1X6F1   A0A0A1WPA4  

Pubmed

12644555    28756777    9092665    25527032    18362917    19820115    + More
23537049    25348373    24330624    25830018   

EMBL

AB090825    BAC57926.1    AB078935    BAC06462.1    AB078931    BAC06456.1    + More
AB078930    BAC06454.1    AB078929    BAC06452.1    KZ149896    PZC78733.1    LBMM01012027    KMQ86470.1    D85594    BAA19776.1    RSAL01000481    RVE41577.1    LBMM01006954    KMQ90166.1    LBMM01005707    KMQ91279.1    LBMM01006671    KMQ90407.1    LBMM01005733    KMQ91252.1    LBMM01006657    KMQ90417.1    LBMM01006063    KMQ90967.1    LBMM01004272    KMQ92618.1    LBMM01002052    KMQ95336.1    LBMM01008682    KMQ88705.1    LBMM01019839    KMQ83438.1    LBMM01019838    KMQ83439.1    LBMM01007036    KMQ90099.1    LBMM01005948    KMQ91066.1    RSAL01003504    RVE40273.1    LBMM01003245    KMQ93755.1    LBMM01004634    KMQ92224.1    LBMM01015018    KMQ84954.1    LBMM01002480    KMQ94776.1    LBMM01008422    KMQ88894.1    LBMM01003988    KMQ92922.1    LBMM01015025    KMQ84953.1    LBMM01007425    KMQ89740.1    LBMM01008448    KMQ88867.1    LBMM01006725    KMQ90373.1    LBMM01004505    KMQ92346.1    LBMM01012412    KMQ86235.1    LBMM01014122    KMQ85315.1    GGMR01014195    MBY26814.1    LBMM01008278    KMQ89009.1    GGMR01000779    MBY13398.1    KMQ94772.1    LBMM01005465    KMQ91492.1    LBMM01005474    KMQ91485.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    LBMM01014956    KMQ84982.1    ABLF02011238    LBMM01003575    KMQ93366.1    GGMR01015159    MBY27778.1    GFXV01002090    MBW13895.1    GGMR01004600    MBY17219.1    LBMM01005216    KMQ91703.1    ABLF02034925    ABLF02041886    LBMM01004262    KMQ92649.1    ABLF02013358    ABLF02013361    ABLF02054869    GGFJ01001727    MBW50868.1    ABLF02009991    ABLF02009992    ABLF02054952    LBMM01004261    KMQ92650.1    GGFJ01001369    MBW50510.1    GFXV01003903    MBW15708.1    GGMR01006838    MBY19457.1    GGMR01011682    MBY24301.1    ABLF02005203    ABLF02041316    GGMR01015354    MBY27973.1    GGFJ01001370    MBW50511.1    ABLF02004674    ABLF02004675    ABLF02004676    ABLF02011637    KU543683    AMS38371.1    GGFJ01001439    MBW50580.1    ABLF02004854    ABLF02041317    GGMR01009778    MBY22397.1    GALX01004785    JAB63681.1    LBMM01021647    KMQ83033.1    ABLF02011183    ABLF02041884    LBMM01015285    KMQ84870.1    KQ971309    EEZ99146.1    GGFL01004044    MBW68222.1    ABLF02018808    APGK01005465    KB736249    ENN83233.1    GAKP01002292    JAC56660.1    LBMM01013668    KMQ85535.1    ABLF02018942    ABLF02041885    GGFL01001583    MBW65761.1    ABLF02004597    ABLF02041324    HACL01000281    CFW94575.1    ABLF02023257    GALA01001777    JAA93075.1    ABLF02014650    ABLF02041557    ABLF02016340    GBXI01013438    JAD00854.1   

Proteomes

UP000036403    UP000283053    UP000007819    UP000007266    UP000019118   

PRIDE

Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF07776   zf-AD
PF00096   zf-C2H2
PF01421   Reprolysin
PF00098   zf-CCHC
PF13966   zf-RVT
PF12017   Tnp_P_element

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR026960   RVT-Znf       
IPR021896   Transposase_37       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       

Gene 3D

3.60.10.10     3.40.390.10    

ProteinModelPortal

Q868Q4   Q8MY27   Q8MY31   Q8MY33   Q8MY35   A0A2W1C3J5   + More
A0A0J7N1D9   O01419   A0A3S2N998   A0A0J7KIY5   A0A0J7KM11   A0A0J7KJG6   A0A0J7KLT9   A0A0J7KJH4   A0A0J7KL06   A0A0J7KQK3   A0A0J7KYD2   A0A0J7N7S8   A0A0J7JZ13   A0A0J7JZF7   A0A0J7KIM6   A0A0J7KLH8   A0A3S2LNH8   A0A0J7NMN5   A0A0J7KPR0   A0A0J7K3R6   A0A0J7KWU5   A0A0J7KF40   A0A0J7KRB8   A0A0J7K3F1   A0A0J7NAV8   A0A0J7KF37   A0A0J7KIW1   A0A0J7KPZ3   A0A0J7N0R3   A0A0J7MY17   A0A2S2PBP5   A0A0J7KFH2   A0A2S2N8I2   A0A0J7KW81   A0A0J7KMG5   A0A0J7NFZ0   J9LJ80   A0A0J7K3R2   X1WJY4   A0A0J7KSR8   A0A2S2PEZ7   A0A2H8TIE5   A0A2S2NJ82   A0A0J7KMU1   J9LVU7   J9KJG8   A0A0J7KQY4   J9JWJ3   A0A2M4BDI3   J9KPP8   A0A0J7NJI3   A0A2M4BBV9   A0A2H8TR36   A0A2S2NQQ6   A0A2S2P488   J9KNG8   A0A2S2PEU2   A0A2M4BC01   J9KV04   A0A142LX45   A0A2M4BC28   X1WXT5   A0A2S2NYY3   V5I8F3   A0A0J7JXX4   X1WZ64   A0A0J7MWN5   D6WC19   A0A2M4CS98   J9KNS1   N6TYN9   A0A034WR48   A0A0J7MYL9   J9KM84   A0A2M4CKQ7   X1WSG8   A0A0E3W2C5   J9KNN8   T1DCM0   J9LM37   J9KUM6   X1X6F1   A0A0A1WPA4  

PDB

6AR3     E-value=1.42192e-05,     Score=118

KEGG

101737183    no KO assigned | (RefSeq) uncharacterized LOC101737183

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676   GO:0004803   GO:0006313  

Length:

571

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.256960000000001

Exp number, first 60 AAs:

0.00052

Total prob of N-in:

0.00574

outside

1  -  571

 

 

Pi

3.69887

Theta

3.772008

Tajima's D

2.46469

CLR

0

CSRT

0.951402429878506

Interpretation

Uncertain