Silkworm Genome Informatics Database

Gene

KWMTBOMO13559 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010991

Annotation

PREDICTED:_splicing_factor?_arginine/serine-rich_15_[Bombyx_mori]

Location

Bomo_Chr23(+):1565756-1576105 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.458

CDS

ATGGACATGGCGGAAGTGAAAGCGTTCAACGCGGAGTTATCCGGGTTGTACGACAACAAGCCGCCTATATCGAAGGCGAAGATGAGTGCTATCACTAAAGGTGCTATAAAGGCCATAAAGTTTTATAAACACGTCGTGCACAGTGTTGAAAAGTTTATACAGAAATGCAAACCTGAGTACAAAGTTCCTGGCTTATATGTGATCGATTCAATAGTGCGACAATCTAGACATCAGTTTGGACAAGATAAAGACGTCTTTGCTCCAAGGTTCGCGAAGAACATGCAGCAGACGTTTGCCAATTTGTTTCGATGCCCTGCTGAAGATAAGCGTAACATAATCCGAGTTCTCAATCTATGGCAGAAGAATAATGTGTTTAGTCCTCAAGTTATTCAACCATTACTAGACATGGCTGACCCCAACCATCCACTTCATCAAGAAATACAACAGAATAATAATGCTAATGGCAGCAGTTTAAACTTAAGTCACAATACATCTGACAAACTATCACCAATACCTGCTCAACACACACCAAGATCTGCATCTCCTATGGGTGATCAGTTCCAGGATGAGCCATCTGGGCAGCCCGGTGTGAAATTCAATAGGAAATTGCTCAATGACTTTGAGTATGAAAGTGAAGATGAACCTCCATCTGATCCTCCTCCTCAGTCAACTCAGTCGTCTCATTCCACACACTCAGGTCATACTGGACATTCTCAATACAATACTAACAGTGCTCCTTCAAATCAGAATCAAACTCAGAATCCTGCTGATGCTCTTGGGAGTATACTTACAAATCCAGAGATTATGAGACAACTACAGAGTCTGCAAGCCCAGATGCAGATGATGACTGGGATGCAAATACCTAATTTTATGCCCATGATGTCTGAAATGCAAATGCAACAAAATCAAGGACAAAATTTATTTATGAATTCTCAACTGGAGCAACAGAAACAAACAGAGACAAAAGATGATGTCGCCAATGAATCGGACATAGAGTTTGTCGACACTGGACCGCAGGTGATTGAGATAACTGATGCTAATGACTCCAGGGATAGAGACAAAGACAGAGAAAAGGAAAGAGAGAAGCAGAACAAAGAAAGAGAGGCAGAGAAAGAGAAACAAAGAGAAAGGGAAAAGAAAGGACTCCCACCAATCAAAAAAGAACATCTCAGTGTGTGCAGTACGACTCTATGGGTGGGACATCTGTCCAAGCTGGCGACGGCCGAGGAGCTGTCCGACCTGTTCGGCGCCATCGGGGGCGTCACCTCCATCGACGTGGTGGCTCCGCGGGGCTGCGCCTTCGTCGTCATGGAGAGGCGCCGCGACGCCGCCCGCGCCCTGCAGCGCCTGCACAAGCACAAGCTGCACTGCAAGGAGATCACCGTGGCCTGGGCGCCCGGACGGGGGGTCAAAGGGCGCGAGTGGCGCGACTACTGGGAGGCGGAGCTGGGCGCGTCGTACCTGCCGTGGGGCGCGCTGCACGAGCGCTGGACGCACGCCGCGCTGGCGCTGCACGCGCTCGAGGACGGCGGACACGTGGACGAGGACACGCTGCCGCCCTGGCTGCCGCCCAGGATCCTTCCCAAAACGATGATGGAGATGCCAATGATGCCCGTGATGCCGCCGGTGTCGGGGGCGCCCGGCATGATGCCGCCCGCCATGCCCAACATGGCCGCGATGCCCCCCATGGCCAGCATGCCCAGCATGCCCGCGCTGCCGCCCACGCCCCTTCCCAACATACCTCCAGGAGCGATGTCCCTGGGAGGAGCCAACCCGCTGTCCGTCCCCGTGCCCAGAGGACCGCCCCCCGGGCTAGGAACAACAATGCCCCCGGGTATGACTCCGGCAATGCCACCGGGCATGAGACCCCCGGGGCTACCGTCCGGAGTACCGGGTCTACCGTCTGGGGCACCAGGACTGCAGAGCGACGCGGGCATGGCGTCGGCGGGGCAGCTGCTGCGCCTGCCGCCGCAGAGCCTGGGACAGCCCGCCATGGTGGGCGGCTTCCTGGGCGGCCTGCTGGGCGTGGGCGGCATGCTCCCCGGGGTGCTGCCGATGCCCATGCCGTCTCTGCACCACATGCACCAGCTGTGA

Protein

MDMAEVKAFNAELSGLYDNKPPISKAKMSAITKGAIKAIKFYKHVVHSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQDKDVFAPRFAKNMQQTFANLFRCPAEDKRNIIRVLNLWQKNNVFSPQVIQPLLDMADPNHPLHQEIQQNNNANGSSLNLSHNTSDKLSPIPAQHTPRSASPMGDQFQDEPSGQPGVKFNRKLLNDFEYESEDEPPSDPPPQSTQSSHSTHSGHTGHSQYNTNSAPSNQNQTQNPADALGSILTNPEIMRQLQSLQAQMQMMTGMQIPNFMPMMSEMQMQQNQGQNLFMNSQLEQQKQTETKDDVANESDIEFVDTGPQVIEITDANDSRDRDKDREKEREKQNKEREAEKEKQREREKKGLPPIKKEHLSVCSTTLWVGHLSKLATAEELSDLFGAIGGVTSIDVVAPRGCAFVVMERRRDAARALQRLHKHKLHCKEITVAWAPGRGVKGREWRDYWEAELGASYLPWGALHERWTHAALALHALEDGGHVDEDTLPPWLPPRILPKTMMEMPMMPVMPPVSGAPGMMPPAMPNMAAMPPMASMPSMPALPPTPLPNIPPGAMSLGGANPLSVPVPRGPPPGLGTTMPPGMTPAMPPGMRPPGLPSGVPGLPSGAPGLQSDAGMASAGQLLRLPPQSLGQPAMVGGFLGGLLGVGGMLPGVLPMPMPSLHHMHQL

Uniprot

A0A212EXH8

Pubmed

22118469

EMBL

AGBW02011749 OWR46193.1

Proteomes

UP000007151

Pfam

PF00076 RRM_1 + More
PF04818 CTD_bind

Interpro

IPR006569   CID_dom        + More
IPR008942   ENTH_VHS
IPR006903   RNA_pol_II-bd
IPR035979   RBD_domain_sf
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom

SUPFAM

SSF54928 SSF54928 + More
SSF48464 SSF48464

Gene 3D

1.25.40.90 3.30.70.330

CDD

cd03562 CID

ProteinModelPortal

A0A212EXH8

PDB

2DIW E-value=1.83032e-58, Score=575

KEGG

101744893 K13191 RNA-binding protein 16 | (RefSeq) splicing factor, arginine/serine-rich 15

GO

GO:0003723 GO:0000166 GO:0003676 GO:0043565 GO:0005737 GO:0008235 GO:0019538 GO:0030145 GO:0016491 GO:0015930

Length:

697

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

18.31902

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00381

outside

1 - 697

Pi

171.752239

Theta

169.723331

Tajima's D

-0.812139

CLR

11.213989

CSRT

0.174291285435728

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics