Silkworm Genome Informatics Database

Gene

KWMTBOMO13545

Pre Gene Modal

BGIBMGA010980

Annotation

PREDICTED:_homeobox_protein_Hox-D4a-like_[Amyelois_transitella]

Location

Bomo_Chr23(-):1178640-1179822 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.446

CDS

ATGTCTCGCTCATTTTTAGTCGACACTCTGATCAGTGACACGAAGGACTCGAAGAAATCCGACATGGCCAGCGACTCTTTCAATCCATACACAAGTTTAATCGGCTCACACTTAGATCCACGACCGAAGTTCTTGCCGTACCCATATCCGGGAAATTTGAACAATCTTCTAAGTTTCGGTCTGCAACATCAAAGGTCACCGGATCTGTTCAGGCCGTTTTTGGAGCAACTGCACTTCAGATATCCGATGCTCCATCAGCTGCCGCGTCAACCGGAATTAGTGGAGAGCCAAAATGAGCCGAGGCCTTTTGATAGCTTTCTAAAAACCGAGGATCAAGAGCCCGTGAATTTCGTGAATCGAAGGAAGAAGTCTGTATCGCCATACTTGCATCACCCATATAAAACAAGTTCACCATCTAAAAGTCAAGGTCAAAGATCACCTTCTTTATCAAGCGACAGCAGAAATGGAACTCCCAGTCCACCGCTGGCTCATCCAGAAGAACTTCTCCCGGGATACTCAAAGGACTTGAAACGTTTACCTTTAAAAGAAGATTCCAGTAAACGCATCAGAACCGCATTCACCGGCACTCAACTTCTAGAATTAGAAAGAGAGTTCTCAATGAACATGTATTTGTCGAGATTGAGAAGAATAGAGATCGCCTCGCGACTGAAGCTATCTGAGAAACAAGTGAAGATTTGGTTCCAGAATAGAAGAGTGAAGTTGAAGAAAGAAGAGTCCCCGTTGTCTTCTGCCGAAGGGAAAGTTAAAAAGTGCTGCTGCTCTAAGTCCTGTTCCAAGAACCAGGAGTCTTCGTGTGAGAATGAACAGATAGACGTTGTCAGTGATGAAGGTTTTCAGTCGCGGCATTTGTCACACTATCATTAG

Protein

MSRSFLVDTLISDTKDSKKSDMASDSFNPYTSLIGSHLDPRPKFLPYPYPGNLNNLLSFGLQHQRSPDLFRPFLEQLHFRYPMLHQLPRQPELVESQNEPRPFDSFLKTEDQEPVNFVNRRKKSVSPYLHHPYKTSSPSKSQGQRSPSLSSDSRNGTPSPPLAHPEELLPGYSKDLKRLPLKEDSSKRIRTAFTGTQLLELEREFSMNMYLSRLRRIEIASRLKLSEKQVKIWFQNRRVKLKKEESPLSSAEGKVKKCCCSKSCSKNQESSCENEQIDVVSDEGFQSRHLSHYH

Uniprot

H9JN77 A0A2H1V2X1 A0A2W1BKL2 A0A2A4JKG0 A0A212FL61 A0A0L7KF71 + More
A0A194PSK2 A0A194RF07 A0A182SUP1 A0A182R4T8

Pubmed

19121390 28756777 22118469 26227816 26354079

EMBL

BABH01033190 ODYU01000429 SOQ35181.1 KZ150061 PZC74225.1 NWSH01001111 + More
PCG72565.1 AGBW02007860 OWR54472.1 JTDY01010022 KOB61731.1 KQ459595 KPI95948.1 KQ460313 KPJ16039.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000037510 UP000053268 UP000053240 + More
UP000075901 UP000075900

PRIDE

H9JN77

Pfam

PF00046 Homeodomain

Interpro

IPR017970   Homeobox_CS        + More
IPR001356   Homeobox_dom
IPR020479   Homeobox_metazoa
IPR009057   Homeobox-like_sf

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

H9JN77 A0A2H1V2X1 A0A2W1BKL2 A0A2A4JKG0 A0A212FL61 A0A0L7KF71 + More
A0A194PSK2 A0A194RF07 A0A182SUP1 A0A182R4T8

PDB

2H1K E-value=1.92904e-14, Score=191

KEGG

101743730 K09310 homeobox protein GSH | (RefSeq) GS homeobox 1

GO

GO:0005634 GO:0043565 GO:0006355 GO:0003677 GO:0005737 GO:0008235 GO:0019538 GO:0030145 GO:0003676 GO:0016491 GO:0015930

Subcellular location

Nucleus

Length:

294

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00037

Exp number, first 60 AAs:

0.00034

Total prob of N-in:

0.01193

outside

1 - 294

Pi

184.725708

Theta

204.631364

Tajima's D

-0.316971

CLR

249.906105

CSRT

0.28273586320684

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics