Silkworm Genome Informatics Database

Gene

KWMTBOMO13540

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC106708942_[Papilio_machaon]

Location

Bomo_Chr23(-):981198-985820 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.592

CDS

ATGTCCGAGAAGGACCTTGAAGTAAGCTCCTTTAGAGCCAATGTCGTGTCAGACGATGACATGGCCACAGTCGGTTCGGCCCAATCGTCGACCCGCTCGTCGCCGACACGACGACAGCGGAAAAGGGTCCTTAATATAAGCTCAGACGGGTTGAGCAGCAGCTCCGGTTCGGAGACTCAGGGCCCGTCAGTTGCGAAGCCCAGAGCCGTGACGCCATCAAAGCGTGGAAGGGGACGCCCTCCGACCACGAAGCAGTGCGTTGGCATGGCTGCTGCCAGGAAGGCGTGCCTTAGGGCCCAAAGAGAGGAGAGGGAGTTCACAGAGAGCGCGCGCACCACGCGCCAGAAGAAGAGAGCGGCTGAGGGATCTGTCCCTAAGCCTGATGCCGAGCGTAGGCTCCATCAGAGTGCTGAGGTGGCTCTGACGGTGGCCGCCAAATCTAGTAGCCCGAAGGGCACGTATGTGCGTGCATTGAAGGAGTTGGCGGCCACCGTCAAGGAGGCCACGGAGGACCTTGTGGGCCGCACCGCAACTGAAGAGGCTGAAAGACTGCGTGCGATCAACGCCAAGCAGGAGCAGGAGATCCTACAGCTTCGCAAGGAGCTTGATGAAATTAGGAGGGAGCTGGCTACGGTCTCGCAGGTGCTAGGAAATGCACCAGCCGCAGCCCCGGCCCCAAACACCGAAGAAGAAGAGGAGGAGTTGCGCCTCCAGCGCATTATGCGAGCTGTCGGCACGATGCTCGACGCTCGCTTTGCGGGGCTGGAGGGACGGCTTCTACCGGAGCCGCGAATGCGACCACCGCTAGCGGCGGACAGGCGGAAGAGCCGCGAAAAATCACCGGACCCTCCTATGGTCGTAGACGCTACACTGAATTCGGCACCATTATTGAAACCAGTGCCACCTACAACATCGGCGAAAAAGAGGATACGAGGCCCCAGAAGAAAAGCCACTGCGCAAGTGGCTCCACCTGGAACGCCCACCCTCCTCCCGGCTCCAGCTTCCTTGATCGAGAGCTGGTCAACGGTCACCCGTAGGGGCACTCGGCCGAGGGAGGGAGCAGTGAGGACGGCTCCAGTGGTAGCACCCGCTGAAGCGGGAAAGAAAAACCCGTCCTCTGCAAAGAGGAAAGAGAAGAAGCTGCGTCCTCCGCGCTCTCAAGCAGTTGTGCTCAAGCTGCAGCCGGAGGCTGTAGAAAGAGGACTCACATACCGCAGCGTACTCGCCGAAGCGAGAGCCAAGGTGGACCCCGGGGCACTCGGAATCCCCATCCAGCGCATCCGGTCTGCAGTGACTGGGGCCAAGGTGTTGGTAGTGGAAGGTGCTGATCAGAGCGCCAAGGCTGATCTCCTGGCCCAAAAGCTTCGTGAGGTTCTGTCCGCGGAGGGGGTCATCGTGACCCGGCCAGTGACGACTGCAGCCATCCGCATCAGCGGGCTGGATGACTCCTTGACGCCGGAGGAAGTAGCCGCTGAGCTCGCCCGGATTGGCGAATGCACTCTTGAAGCGGTGAAGATCGGAGAGATCAAGTCTGGCCCAAGTGGGATGGGTCAGGTGTTGGTTCGGTTGCCCGTCGCTGCCGCGACGAAGGTCCTCGCCGTACCGAAATTGAGGGTCGGTTGGAGCGTGCTCCGCGCTCATCTGCTAGAGGCTAAGAAGCTACAGTGCTTCCGATGCCATGAGCTAGGGCACGTGAGCGCTCGATGTCCGTCGTCGGTCGACCGCAGCCGTGATTGTTACCGGTGCGGCCAGACCGGCCACGTAGCGTCCGGCTGCTCTCTGGCGCCACACTGTGCTGTATGTGCCTCTGCCGGCAGACCGGCGGATCACGTCTCCGGGAGCAAGGCTTGTGCCAAGTCCCCGAGACCGAGACCTAGAAGAGGAGCTTCCGCTGCGCTTGAGAATGCGCGGAGGCAGCCCGGTGTCCTTCGATTCCTGCAGGGGAATCTCAATCACTCTGCCAGAGCTCAGGACCTTTTGTTCCAGAGCATGGCAGAGGGGTTGACCCATCTTGCGGTGGTCGCCGAGCCGTATCGGGTTCCTTCGAGCCCCGATTGGGCAGCCGATTTGGAGGGCCGAGTGGCTATCATCCGACGTTGTTGTGTAGGTGCTCCGCCCAGGTTCGACGTTGTCGAGAGAGGTTGCGGCTTTGTTGCTGTCCTCTGGGCCGAGGTATTCATATTGGGAGTGTACTTCTCCCCAAACAGGACGCTCGCCGAGTTTGAGGTTTTTCTCAACGAGCTCAGCCGCGTCGTTGGGAGGTCGCACTCCCAACGGATACTCGTTCTCGGGGACCTCAACGCCAAGTCATTGGCTTGGGGATCCTCGAGGACGTGCCCCAGAGGTAGGGCGGTGGAGGAGTGGCTGGTCGGAAGCGGTCTTCTCGTCCTCAATCGTGGCGCAGAACTCACGTGCGTGCGACGTTTGGGCGGGTCCGTGGTTGACGTTACATTTGCCACGCCCGACGTGGCGAATCGCGTACGCGGTTGGGCCGTGATGGTCGGCGAGGAGACGCTCTCCGACCACCGCTACATTCGTTTCGGTGTCGCAGTGCCTCTGGCGGAGTCTATCCAGGGCTCTTCCTTGCTCTGCGGTGGCGGCGCGGGGGGTCCTCGTTGGGCCCAGAAGCGCCTCAACGTCGAGAGGTTGTGTGAGGCGGCTGTAGTCCAGGCATGGCGTCTTGACTCGCTTGGTGAGCCAGCAGACGTGTGCGAGGGGGTGGAGCATCTGCGCGAGGCGATGTCGCGGGTGTGCGACGCCGCTATGCCTCGCATTAGAGCTCTCGCTCCTAAACGCAGAGTCCACTGGTGGACTGAGGAGATCGCTAGCCAGCGCCGGTTGTGCGACGTCAGTCGTCGCGCATACCAACGGTATCGACGTCGAAGAACGCACCGGGACCCCGATGAGGAGGACCGACTGTACGAGGTGTACAGGATGGCCATAAGGGCCCTGCGCGTGGCTATCGGGGAGGTGAAGGAGGCTGCTTGGAACGACCTACTAGCTTCGCTCGACTGTGATCCCACCCTGCCGCCGGAGACATTGCAGCGGGTAGTCGGGTGTCTGTTTCCGGATTTTACCGGGACGGCCTTCGTCCCCCCTGTGATGACGACGATGCGGGTTGCTGATGGCGGGGAGCCTGCGGACGTTTCGCAGGCGGAGTTTGAATCGGCTGTGCAGAGGATGCGGGCGAAGCGCACGGCTCCCGGTCCCGATGGGATCTCGTCCCGAGCATGGGCGCTCGCCTTGACGGGCGATGGTTTGGGGCCTGCCCTCCGAAGGCTGTTCAGCCGGTGCCTCCGTGAGGGCAGGTTCCCAGAGCCATGGAGGACTGGTCGGCTCGTCCTTATTCCTAAGGAGGGTCGGCCACGTGACGAACCGAACGGGTACCGCCCAATCGTCGTGCTGGACGAGGCCGGTAAGCTCTTCGAGCGCGTCATCGCTAATCGCCTTGTCCAGCACCTGGAAAACGTTGGGCCTGATTTGGCTCCTAACCAATACGGTTTCCGGAGGGGTCGCTCGACCGTGGACGCGGTCTTGCGTGTCCGCCATCTCTCCGATTGTGCGTGCTCCGAGGGGGGCGTGTTGTTGGCTGTGTCGATTGACATCGCCAACGCCTTCAACACGATCCCCTGGAGCACGATCGTGGAATCACTTCGGTTTCACCGCATCCCCAATAGTCTCCGCACCCTGATAGAGGACTACCTCTCAGGGCGGAGCGTGATTTTCCCCGAGAGAAGAGGATGGGGACGAAAAACGGTGTCGTGCGGGGTCCCACAGGGGTCGGTATTGGGACCACTCCTGTGGGACATCGGTTTCGACTGGGTCCTCCGCGGTGCTGGCCTGCGTGGCGTCGACGTGGTGTGCTATGCCGACGACACGTTGGTGACGGCTCGCGGAGCTGACTACAGGACCGCAGCGATCCTTGCAACGGCGGCGGTCTCCACCGTCGTTAGCCGCATTCGGAGACTAGGTCTTGAGGTGGCCCTCCACAAGTCTGAGACTGTTGGGTACTGGGTGCGGGGGCGCCCGGTGCTCTGCTGTCGGTTCCGTGGTGAGGCGGCGCAAGGTGGCTCCTATGCGCCACTCACGGTGTCTCCTGAGACGACGTCCTGCGGGATCTTCCCGGGGATTGGATCCCGTCCTATTGTCAGGATGGGTACCGGCGACGGCGAGCCTGCGGCGCGCATTGTGCGGTACCGTAGGTTTCGTGGAGTCGGAGTGGTGGAGCTCGATGGGGTTTAG

Protein

MSEKDLEVSSFRANVVSDDDMATVGSAQSSTRSSPTRRQRKRVLNISSDGLSSSSGSETQGPSVAKPRAVTPSKRGRGRPPTTKQCVGMAAARKACLRAQREEREFTESARTTRQKKRAAEGSVPKPDAERRLHQSAEVALTVAAKSSSPKGTYVRALKELAATVKEATEDLVGRTATEEAERLRAINAKQEQEILQLRKELDEIRRELATVSQVLGNAPAAAPAPNTEEEEEELRLQRIMRAVGTMLDARFAGLEGRLLPEPRMRPPLAADRRKSREKSPDPPMVVDATLNSAPLLKPVPPTTSAKKRIRGPRRKATAQVAPPGTPTLLPAPASLIESWSTVTRRGTRPREGAVRTAPVVAPAEAGKKNPSSAKRKEKKLRPPRSQAVVLKLQPEAVERGLTYRSVLAEARAKVDPGALGIPIQRIRSAVTGAKVLVVEGADQSAKADLLAQKLREVLSAEGVIVTRPVTTAAIRISGLDDSLTPEEVAAELARIGECTLEAVKIGEIKSGPSGMGQVLVRLPVAAATKVLAVPKLRVGWSVLRAHLLEAKKLQCFRCHELGHVSARCPSSVDRSRDCYRCGQTGHVASGCSLAPHCAVCASAGRPADHVSGSKACAKSPRPRPRRGASAALENARRQPGVLRFLQGNLNHSARAQDLLFQSMAEGLTHLAVVAEPYRVPSSPDWAADLEGRVAIIRRCCVGAPPRFDVVERGCGFVAVLWAEVFILGVYFSPNRTLAEFEVFLNELSRVVGRSHSQRILVLGDLNAKSLAWGSSRTCPRGRAVEEWLVGSGLLVLNRGAELTCVRRLGGSVVDVTFATPDVANRVRGWAVMVGEETLSDHRYIRFGVAVPLAESIQGSSLLCGGGAGGPRWAQKRLNVERLCEAAVVQAWRLDSLGEPADVCEGVEHLREAMSRVCDAAMPRIRALAPKRRVHWWTEEIASQRRLCDVSRRAYQRYRRRRTHRDPDEEDRLYEVYRMAIRALRVAIGEVKEAAWNDLLASLDCDPTLPPETLQRVVGCLFPDFTGTAFVPPVMTTMRVADGGEPADVSQAEFESAVQRMRAKRTAPGPDGISSRAWALALTGDGLGPALRRLFSRCLREGRFPEPWRTGRLVLIPKEGRPRDEPNGYRPIVVLDEAGKLFERVIANRLVQHLENVGPDLAPNQYGFRRGRSTVDAVLRVRHLSDCACSEGGVLLAVSIDIANAFNTIPWSTIVESLRFHRIPNSLRTLIEDYLSGRSVIFPERRGWGRKTVSCGVPQGSVLGPLLWDIGFDWVLRGAGLRGVDVVCYADDTLVTARGADYRTAAILATAAVSTVVSRIRRLGLEVALHKSETVGYWVRGRPVLCCRFRGEAAQGGSYAPLTVSPETTSCGIFPGIGSRPIVRMGTGDGEPAARIVRYRRFRGVGVVELDGV

Uniprot

A0A0J7KQK3 A0A0J7N0R3 A0A0J7KFH2 A0A0J7NFZ0 A0A0J7NC28 A0A0J7KF91 + More
A0A0J7KCD9 A0A0J7KIS5 A0A0J7KRB8 J9L0J0 J9LA43 A0A139W939 J9M784 A0A139W940 A0A139W9B3 A0A139WAH4 J9KNS1

Pubmed

18362917 19820115

EMBL

LBMM01004272 KMQ92618.1 LBMM01012412 KMQ86235.1 LBMM01008278 KMQ89009.1 + More
LBMM01005474 KMQ91485.1 LBMM01006996 KMQ90130.1 LBMM01008445 KMQ88871.1 LBMM01009610 KMQ87992.1 LBMM01006977 KMQ90149.1 LBMM01003988 KMQ92922.1 ABLF02027248 ABLF02018098 KQ972691 KXZ75807.1 ABLF02018758 ABLF02018759 KXZ75806.1 KQ972544 KXZ75869.1 KQ971388 KYB24913.1 ABLF02018808

Proteomes

UP000036403 UP000007819 UP000007266

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00098   zf-CCHC

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom
IPR000663   Natr_peptide

SUPFAM

SSF56219 SSF56219 + More
SSF57756 SSF57756

Gene 3D

3.60.10.10

ProteinModelPortal

A0A0J7KQK3 A0A0J7N0R3 A0A0J7KFH2 A0A0J7NFZ0 A0A0J7NC28 A0A0J7KF91 + More
A0A0J7KCD9 A0A0J7KIS5 A0A0J7KRB8 J9L0J0 J9LA43 A0A139W939 J9M784 A0A139W940 A0A139W9B3 A0A139WAH4 J9KNS1

PDB

1WDU E-value=2.29118e-08, Score=145

KEGG

105842185 no KO assigned | (RefSeq) uncharacterized LOC105842185

GO

GO:0008270 GO:0003676 GO:0003964 GO:0005179 GO:0005576 GO:0046872 GO:0005737 GO:0008235 GO:0019538 GO:0030145 GO:0016491 GO:0015930

Length:

1413

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02661

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00007

outside

1 - 1413

Pi

0

Theta

0

Tajima's D

0

CLR

0.401915

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree