SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13506
Pre Gene Modal
BGIBMGA009201
Annotation
PREDICTED:_organic_cation_transporter_protein-like_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 4.737
 

Sequence

CDS
ATGGCAGACAGAAAACCCAGCGTGGACCCCGCGAGGAAGGGCAGCGCATTTGACCAGCCAATAGATCTAGACCATGTGCTCATCAACGAGCTGGGACAGTTTGGATTGTTTCAGTTGAGGAACATCCTCTTGGTGGCCATACCTATTATCATGTCGGCTTTCATGAGCGAATTCGTCTTTTCTGCTGCAGCTATTCCTCACAGGTGTCGGATCCCAGAGTGCGGGGAAGTTGAGAAAAGTACGAATTACGACCGAGAGTGGTTGGCGAACGCCATCCCTGAGAGCGACTCTGGATTCGCGAGTTGTGAGCGGTTCGCTCCAGTCACCGGGATCAACGGGACATTGGACTACTGTCCGCCGAATATCTTCCAGACCAACACCATTGAGTGCGATGGATTCATTTATACCAGAGATAACTCTGTTGTTTTTGACTTCGACCTTGGGTGCCAGGAGTGGCTTCGTGCTCTTGCCGGCACTTTATCCAGCGTGGGGACATTGCTGGTCCTGCCCATCACTGGTTATGTTTCCGACCGCTTCGGGAGACGTATGGCCCTAGTGATCAGCGTCTTCAACTTGGCACTATTTGGCTTAATCAAAGCCTTCTCCGTAAACTACGTTATGTACTTGGCTTTCCAGGTAATACAGACGACTCTGGGGGCCGGCACCTTCAGCTCCGCCTACATATTCGCCACTGAATTCGTGGGACCGAAGTACCGAGTCATTACCAGTGCGACCTGCTCATCGATGTTCGCGGTCGGTCAAGTGGTCCTCGGGGGGATCGCGTGGCTGGTCCAGCCCTGGCGGTACATGATCATGACGCTCCACATCCCTTGTTTCCTTATCGTCTCATACTACTGGCTACTATCGGAGAGCGTAAGATGGCTGCTCTCAAAGAGAAAATTCGATGAAGCCCGACGGGTCTTGGAGAAAGCTGCCCATGTTAACAAGAGAGAGATTAGTCAGAAGTCTATGAACGCATTGATGAGGCCTCCAGCGGCGGTCGCCACGGCGGAACCCGTAGAAGCAGACCCTGGAGTTCTCAGAACCATAATCAAATCTCCTATCCTACTCCGTCGTGTGTGCACCACGCCGATCTGGTGGATCACCACGACCTTCGTGTACTACGGCCTCTCCATCAACTCCGCCAGCTTATCAGACACCATTTACTTGAACTACATCCTGACCTGTGCTATCGAAATCCCTGGATTTTACACTGCGGTCTTGATTCTGGACAGGGTCGGAAGAAAGCCGACTTTATCTGGTGGATTCTTCTTCAGTGCTCTTTGCAATATAGCCTTTGCTTTCATACCTAACGACATGACAGTTCTTCGCTTGATAATATTCCTTCTGGGCAAGTTCGGTATCTCCATGGTGTTCACATCCCTGTACCTGTTCACGTCCGAGCTGTACCCCACGCAGTACAGACACAGCCTGCTCGCATTCTCGTCCATGATCGGTCGCATCGGATCCATCACTGCTCCACTCACTCCTGCTTTAATGGAGTATTGGCATGGCATACCTACAGTGATGTTCGGCGCTATGGGCTTCCTCTCCGGAGTGCTGATCCTCACTCAGCCCGAAACCCTGGGCACCAAGATGCCGAACACACTCGCAGAGGCAGAGGCGCTTGGCACTCCTCAATCCAAGATACAAAGCAACTAA
Protein
MADRKPSVDPARKGSAFDQPIDLDHVLINELGQFGLFQLRNILLVAIPIIMSAFMSEFVFSAAAIPHRCRIPECGEVEKSTNYDREWLANAIPESDSGFASCERFAPVTGINGTLDYCPPNIFQTNTIECDGFIYTRDNSVVFDFDLGCQEWLRALAGTLSSVGTLLVLPITGYVSDRFGRRMALVISVFNLALFGLIKAFSVNYVMYLAFQVIQTTLGAGTFSSAYIFATEFVGPKYRVITSATCSSMFAVGQVVLGGIAWLVQPWRYMIMTLHIPCFLIVSYYWLLSESVRWLLSKRKFDEARRVLEKAAHVNKREISQKSMNALMRPPAAVATAEPVEADPGVLRTIIKSPILLRRVCTTPIWWITTTFVYYGLSINSASLSDTIYLNYILTCAIEIPGFYTAVLILDRVGRKPTLSGGFFFSALCNIAFAFIPNDMTVLRLIIFLLGKFGISMVFTSLYLFTSELYPTQYRHSLLAFSSMIGRIGSITAPLTPALMEYWHGIPTVMFGAMGFLSGVLILTQPETLGTKMPNTLAEAEALGTPQSKIQSN

Summary

EMBL
BABH01041117    BABH01041118    BABH01041119    JTDY01005496    KOB66936.1    KQ459595    + More
KPI95922.1    ODYU01001366    SOQ37439.1    RSAL01000360    RVE42198.1    NWSH01000100    PCG79561.1    KZ149964    PZC76255.1    RVE42200.1    AGBW02010973    OWR47448.1    KPI95921.1    OWR47449.1    KQ460313    KPJ16064.1    JTDY01004270    KOB68356.1    KPJ16066.1    BABH01041114    NWSH01002815    PCG67489.1    JTDY01005018    KOB67470.1    KQ460205    KPJ16878.1    OWR47450.1    KQ459606    KPI91250.1    KPJ16069.1    PCG79557.1    RVE42203.1    AGBW02014542    OWR41479.1    AGBW02013857    OWR42632.1    PZC76259.1    JTDY01005909    KOB66490.1    KPJ16068.1    KPI95919.1    ODYU01003788    SOQ42987.1    KPI95918.1    PCG79559.1    ODYU01001566    SOQ37954.1    SOQ42986.1    PZC76257.1    NWSH01001466    PCG71160.1    SOQ37955.1    KZ150061    PZC74228.1    PCG71159.1    PZC74227.1    RVE42202.1    ODYU01004183    SOQ43775.1    JTDY01011376    KOB56709.1    PCG79558.1    KOB66489.1    PZC76258.1    SOQ37440.1    BABH01041122    RVE42197.1    JTDY01005309    KOB67130.1    JTDY01010709    KOB58080.1    KQ459193    KPJ03085.1    AGBW02003000    OWR55596.1    RSAL01000186    RVE44804.1    DS232756    EDS45429.1    NEVH01001354    PNF42898.1    AAAB01008986    EAA00192.3    CH477563    EAT38951.1    PCG79564.1    EDS45428.1    PNF42889.1    AXCM01003135    PNF42891.1    KK852482    KDR22929.1    RSAL01000027    RVE51971.1    OWR41475.1    ODYU01001220    SOQ37134.1    RSAL01000974    RVE41008.1    AXCN02001021    JXUM01021216    KQ560594    KXJ81736.1    RVE44802.1    GFDF01009227    JAV04857.1    GFDF01009228    JAV04856.1    KPJ03081.1    NWSH01003151    PCG66854.1    ODYU01002328    SOQ39679.1    KPI95914.1    KPJ03082.1    PZC76264.1    NWSH01002161    PCG69013.1    KQ459762    KPJ20130.1    JTDY01000842    KOB75696.1    KQ460325    KPJ15841.1    AGBW02010692    OWR48028.1    PCG79571.1    PCG79565.1    KQ979657    KYN19975.1    EDS45427.1    GDHF01009833    JAI42481.1    GEZM01087818    JAV58458.1    GDHF01026931    GDHF01013660    GDHF01009296    JAI25383.1    JAI38654.1    JAI43018.1   
Pfam
PF07690   MFS_1        + More
PF00083   Sugar_tr
Interpro
IPR020846   MFS_dom        + More
IPR005829   Sugar_transporter_CS       
IPR011701   MFS       
IPR036259   MFS_trans_sf       
IPR005828   MFS_sugar_transport-like       
IPR036769   Ribosomal_L11_C_sf       
IPR020785   Ribosomal_L11_CS       
SUPFAM
SSF103473   SSF103473       
Gene 3D
PDB
4LDS     E-value=8.70234e-11,     Score=162

Ontologies

Topology

Length:
553
Number of predicted TMHs:
12
Exp number of AAs in TMHs:
247.47897
Exp number, first 60 AAs:
18.75908
Total prob of N-in:
0.50424
POSSIBLE N-term signal
sequence
inside
1  -  42
TMhelix
43  -  65
outside
66  -  152
TMhelix
153  -  175
inside
176  -  186
TMhelix
187  -  209
outside
210  -  212
TMhelix
213  -  235
inside
236  -  239
TMhelix
240  -  262
outside
263  -  266
TMhelix
267  -  289
inside
290  -  355
TMhelix
356  -  378
outside
379  -  387
TMhelix
388  -  410
inside
411  -  416
TMhelix
417  -  436
outside
437  -  445
TMhelix
446  -  465
inside
466  -  477
TMhelix
478  -  500
outside
501  -  503
TMhelix
504  -  523
inside
524  -  553
 
 

Population Genetic Test Statistics

Pi
198.271712
Theta
179.777054
Tajima's D
0.777413
CLR
11.876316
CSRT
0.592320383980801
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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