Gene

KWMTBOMO13502

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr23(-):318140-319530      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.059 Nuclear   Reliability : 1.624

CDS

ATGCCGCCTCTAGTACGCCCCTCAGGCCAACCACCGGCTTACGATGACGATGACAAGGCAGAGTTGCTGGCCGATGCACTGTATGAGCAGTGCACCACCAGCACTCAATACGCGGACCCCGAACACACTGAGTTAGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCTGCACTCGGACGCGTTACCCCCCATTACCACTGACGAAGTTAGAGACGCGATCCACAACCTCCAACCTAGGAAGGCACCCGGCTCCGACGGCATCCGCAACCGCGCGCTAAAAATGTTACCAGCCCAACTGATAACGATGTTGGCCACCATCTTAAATGCTGCTATGACGAACTGCATCTTTCCCGCGGCGTGGAAAGAAGCTGACGTTATCGGCATACACAAGCCGGGCAAACCGAAAAACAAAACCGCGAGTTACCGCCCCATCAGTCTCCTCCCGGCGATAGGCAAACTATACGAACGGCTCCTTCATAAACGCCTCTGGGACTTCGTTACCGCGAATAAAATTCTTATAGACGAGCAGTTTGGGTTCCGCGCCAGACACTCGTGCGTCCATCAAGTGCACCACCTCACGGAGCACATCTTACTAGGGCTGAATAGGCGGAAACCCATCCCGACAGGAGCCCTCTTCTTCGATATAGAGAATGCATTCGACAAAGTCTGGCACAACGGTTTGATATACAAACTGTATAACATGGGAGTGCCAGACACACTCGTGCTCATCATACGAGACTACTTATCGAACCGTTCGTTCCGATATCGAGTCGAGGGAACGCGTTCCCGCCCCCGTCACGTCACAGCCGGAGTCCCGCATGGCTTCGCCCTCTCCCCGTTACTGTTCAGTTTGTATATCAATGATATACCCCGGTCTCCGGAGACCCATCTGGCGCTCTTCACCGATGACACGGCCATCTACTACTCGTGTAGGAAGAAGGCGTTGCTTCATCGGCGACTTCAGACCGCAGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATCAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGTCCTCCGAACACCACGTTGAGCATCCCTCTCCCGACTAGGCGCGTCAACACCTCCGCCTCCACCATTCGCCCAATCACGATGTACGACCAGCCCATACCGTGGGCCCCGAAGGTCAAATATTTAGGCGTCACCCTCGACAGAAGGATGACATTCCGCCCCCCTTATAAAGACGGTACGCGACCGTGCAGACTTCATTCTAGGATGTCTCTACCCGATCATATGCAGGCGAAGTAA

Protein

MPPLVRPSGQPPAYDDDDKAELLADALYEQCTTSTQYADPEHTELVDREVERRASLLHSDALPPITTDEVRDAIHNLQPRKAPGSDGIRNRALKMLPAQLITMLATILNAAMTNCIFPAAWKEADVIGIHKPGKPKNKTASYRPISLLPAIGKLYERLLHKRLWDFVTANKILIDEQFGFRARHSCVHQVHHLTEHILLGLNRRKPIPTGALFFDIENAFDKVWHNGLIYKLYNMGVPDTLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPHGFALSPLLFSLYINDIPRSPETHLALFTDDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNTSASTIRPITMYDQPIPWAPKVKYLGVTLDRRMTFRPPYKDGTRPCRLHSRMSLPDHMQAK

Uniprot

Q9XXW0   Q9BPQ0   Q93137   A0A0N1PFV1   A0A0N0PA09   O96546   + More
A0A139W8G9   A0A2S2PR14   A0A1Y1NA23   A0A139WA11   X1WMU5   X1WWC4   J9KKL3   V5GNF3   A0A087U2S8   A0A2S2QJM7   D7EM17   X1WXU3   A0A2J7QUJ9   A0A2J7RIW7   A0A2J7RS77   A0A2J7PMP6   A0A2J7R4B7   A0A2J7RM10   A0A2J7Q4F7   A0A2J7RB54   A0A2J7Q059   A0A2J7RPU2   A0A2S2PX53   A0A2J7PMP9   X1WXE6   A0A087V0P8   J9LC21   A0A2J7Q2R1   J9KC83   A0A2S2NJB5   A0A2J7Q0Q6   A0A2J7QEZ4   A0A2J7Q5G9   A0A2J7R2E1   A0A139W8R7   A0A2J7R6U1   A0A2J7RE85   A0A2J7QFL0   A0A2J7RKP3   A0A224XF24   A0A2J7PDS9   A0A2S2RAN7   A0A2J7QR37   A0A2J7Q1Y9   A0A2J7QY69   A0A2J7PBY3   A0A2S2QEE0   A0A023EZE6   J9KLB1   A0A182GA28   X1WLB2   K7IN67   J9KEU4   X1WN18   A0A2S2NGV8   A0A2J7Q6J2   A0A0A9Y6N1   X1WZH0   A0A2S2PA10   A0A2S2PPK8   A0A2S2PH29   A0A2J7PU96   A0A2H8U0H5   J9JS95   R4FPB9   A0A0H3UA66   A0A023EYS8   V5GNJ2   A0A1Y1M7E9   A0A2S2NPG3   A0A3N5Z7I3   A0A0C9RJA4   A0A2S2N814   A0A2S2QTZ8   A0A2J7R7D0   A0A087TMJ9   J9LFC9   A0A2S2P698   A0A224X7Z3  

Pubmed

10333566    26354079    10380107    18362917    19820115    28004739    + More
25474469    26483478    20075255    25401762    26812285    30086797   

EMBL

AB018558    BAA76304.1    AB055391    BAB21761.1    U07847    AAA17752.1    + More
KQ459265    KPJ02064.1    KQ459259    KPJ02068.1    AF081103    AAC72921.1    KQ973342    KXZ75569.1    GGMR01019198    MBY31817.1    GEZM01008457    JAV94772.1    KQ971729    KYB24751.1    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02003961    ABLF02059872    ABLF02029306    ABLF02029314    ABLF02060138    GALX01005359    JAB63107.1    KK117880    KFM71667.1    GGMS01008766    MBY77969.1    KQ973412    EFA12510.2    ABLF02008933    NEVH01010546    PNF32261.1    NEVH01003017    PNF40781.1    NEVH01000280    PNF43672.1    NEVH01023962    PNF17612.1    NEVH01007443    PNF35684.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01018383    PNF23463.1    NEVH01005938    PNF38077.1    NEVH01020071    PNF21969.1    NEVH01001355    PNF42855.1    GGMS01000737    MBY69940.1    NEVH01023961    PNF17613.1    ABLF02016634    KL813758    KFM83187.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01019080    PNF22876.1    ABLF02033757    GGMR01004661    MBY17280.1    NEVH01019964    PNF22161.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01017559    PNF23833.1    NEVH01007838    PNF34986.1    KQ973073    KXZ75680.1    NEVH01006754    PNF36554.1    NEVH01005277    PNF39135.1    NEVH01014858    PNF27387.1    NEVH01002716    PNF41415.1    GFTR01008038    JAW08388.1    NEVH01026154    PNF14491.1    GGMS01017914    MBY87117.1    NEVH01011985    PNF31054.1    NEVH01019376    PNF22596.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    GGMS01006359    MBY75562.1    GBBI01004571    JAC14141.1    ABLF02040174    ABLF02040183    ABLF02055266    JXUM01155316    KQ572171    KXJ68070.1    ABLF02042518    ABLF02057746    ABLF02040650    ABLF02040651    ABLF02056776    ABLF02021177    ABLF02027367    ABLF02066338    GGMR01003407    MBY16026.1    NEVH01017470    PNF24199.1    GBHO01016303    JAG27301.1    ABLF02034467    GGMR01013409    MBY26028.1    GGMR01018716    MBY31335.1    GGMR01016114    MBY28733.1    NEVH01021205    PNF19912.1    GFXV01007093    MBW18898.1    ABLF02028535    ABLF02028545    GAHY01000238    JAA77272.1    KF280391    AIE77315.1    GBBI01004395    JAC14317.1    GALX01005299    JAB63167.1    GEZM01038405    JAV81653.1    GGMR01006408    MBY19027.1    RPOV01000134    RPJ78669.1    GBYB01008290    JAG78057.1    GGMR01000676    MBY13295.1    GGMS01012005    MBY81208.1    NEVH01006736    PNF36716.1    KK115908    KFM66338.1    ABLF02023911    GGMR01012305    MBY24924.1    GFTR01007929    JAW08497.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000235965    UP000069940    + More
UP000249989    UP000002358   

PRIDE

Q9XXW0    Q9BPQ0    Q93137   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF10551   MULE
PF03372   Exo_endo_phos
PF13358   DDE_3

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR013083   Znf_RING/FYVE/PHD       
IPR038717   Tc1-like_DDE_dom       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10     3.30.40.10    

ProteinModelPortal

Q9XXW0   Q9BPQ0   Q93137   A0A0N1PFV1   A0A0N0PA09   O96546   + More
A0A139W8G9   A0A2S2PR14   A0A1Y1NA23   A0A139WA11   X1WMU5   X1WWC4   J9KKL3   V5GNF3   A0A087U2S8   A0A2S2QJM7   D7EM17   X1WXU3   A0A2J7QUJ9   A0A2J7RIW7   A0A2J7RS77   A0A2J7PMP6   A0A2J7R4B7   A0A2J7RM10   A0A2J7Q4F7   A0A2J7RB54   A0A2J7Q059   A0A2J7RPU2   A0A2S2PX53   A0A2J7PMP9   X1WXE6   A0A087V0P8   J9LC21   A0A2J7Q2R1   J9KC83   A0A2S2NJB5   A0A2J7Q0Q6   A0A2J7QEZ4   A0A2J7Q5G9   A0A2J7R2E1   A0A139W8R7   A0A2J7R6U1   A0A2J7RE85   A0A2J7QFL0   A0A2J7RKP3   A0A224XF24   A0A2J7PDS9   A0A2S2RAN7   A0A2J7QR37   A0A2J7Q1Y9   A0A2J7QY69   A0A2J7PBY3   A0A2S2QEE0   A0A023EZE6   J9KLB1   A0A182GA28   X1WLB2   K7IN67   J9KEU4   X1WN18   A0A2S2NGV8   A0A2J7Q6J2   A0A0A9Y6N1   X1WZH0   A0A2S2PA10   A0A2S2PPK8   A0A2S2PH29   A0A2J7PU96   A0A2H8U0H5   J9JS95   R4FPB9   A0A0H3UA66   A0A023EYS8   V5GNJ2   A0A1Y1M7E9   A0A2S2NPG3   A0A3N5Z7I3   A0A0C9RJA4   A0A2S2N814   A0A2S2QTZ8   A0A2J7R7D0   A0A087TMJ9   J9LFC9   A0A2S2P698   A0A224X7Z3  

KEGG

105842435    no KO assigned | (RefSeq) uncharacterized LOC105842435

GO

GO:0003964   GO:0004519   GO:0008270   GO:0003676  

Length:

430

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.7186

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03821

outside

1  -  430

 

 

Pi

2.440571

Theta

24.63159

Tajima's D

-1.28931

CLR

0.428154

CSRT

0.0916954152292385

Interpretation

Uncertain