Gene

KWMTBOMO13484

Pre Gene Modal

BGIBMGA014468

Annotation

non-LTR_retrotransposon_CATS_[Danaus_plexippus]

Location

Bomo_Chr22(-):18479384-18482472      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.383 Nuclear   Reliability : 1.109

CDS

ATGGAGCGTCTGGAAGTTTTCCTTAAAGACATAGGAGGGGCGAGAGTAATTGTGGGAGGTGACTTCAATGGATGGCACCCATCGTGGGGGAGCGTGAGGGTGAACCCCAGAGGCTCATCACTAGTCGAACTAGCGCACAGCAACGATTTATACATTTGTAACTCAGGAGACACTCCAACCTTCGAAACCATCACTCATGGCCGCAATAGATCATCCATCATCGACCTTACTCTTGCATCCAGCGACCTCTTCAACAGCATCTCTGAATGGCACTACGTCCTGGGAAAAGCCTCGCGAATATTCAACAAACTGTGCTTGTACTCCCGACCAACCTGGGGTGCTCATCCCGAGAACGTGCGCACCATCTATCTCCGAGTCATCGAGCCAATCGTCACCTACGCTGCCGGGGTGTGGGGACACATAGTAAACAAGCGCTACATCAAAAAATCTTTGATGAGCATGCAGCGTGGTTTTGCCCTAAAAGCCATCAGAGGATTCCGCACTATTTCAACCTCCGCTGCTCTGGCTCTCGCACAATTCATCCCTCTAGACCTAAAAATCCGAGAAGTACACCAAATCGAAAAAGTCAGGCTCACTGGGAAAACTGAATTCCTCCCCAATGACATTTCTTATGAGAAACCTGTCCCCGTCAAGGACCTCCTACATCCCGCTAGAAGGCCGACAATCAAACCCATACCCTCCTCTGAACACCGAATTAACTCCGAAATGACGGACAGTACTCTGGTCACTCGCGTATTCACTGACGGAAGTAAGCAGGACGATGGATCAGTTGGAGCCGCATTCGTGCTTTACAGACCCGGCGACACTGAAACATCCGTAACAAAAAAGTACAAATTACACAGTAGCTGCACAGTCTTCCAGGCAGAGCTGTACGCCATCTGGAAAGCCTGTCAGTGGATTGTAAGCGAAAATCATCCCCACACATACATCTTCACCGATTCTCTCTCATCAATATACGCGATAAATAACAGAAGCAACACACACCCCATCATAGTGAACATACACAAACTCATACACGCTAACCACACTACACACAAAATTTTCATAGACTGGGTAAAGGGACACTCGGGTGTCATAGGAAACGAGGAAGCCGATGCGGCTGCCAACAGCGGCGCACGCATGCACAAGGCCCCCGACTACTCGCAGTTCTCAATATCCTACGTGAAACACAAGATTCACACAGAACACCACGCCATCTGGCAAGCCAGATACGAAAGCTCCCGCAGGGCTCACACACAAAAACACTACTACCAAAACTGA

Protein

MERLEVFLKDIGGARVIVGGDFNGWHPSWGSVRVNPRGSSLVELAHSNDLYICNSGDTPTFETITHGRNRSSIIDLTLASSDLFNSISEWHYVLGKASRIFNKLCLYSRPTWGAHPENVRTIYLRVIEPIVTYAAGVWGHIVNKRYIKKSLMSMQRGFALKAIRGFRTISTSAALALAQFIPLDLKIREVHQIEKVRLTGKTEFLPNDISYEKPVPVKDLLHPARRPTIKPIPSSEHRINSEMTDSTLVTRVFTDGSKQDDGSVGAAFVLYRPGDTETSVTKKYKLHSSCTVFQAELYAIWKACQWIVSENHPHTYIFTDSLSSIYAINNRSNTHPIIVNIHKLIHANHTTHKIFIDWVKGHSGVIGNEEADAAANSGARMHKAPDYSQFSISYVKHKIHTEHHAIWQARYESSRRAHTQKHYYQN

Uniprot

A0A3S2NBZ7   Q9BLI5   Q93139   A0A2A4JF48   Q3V5Y4   A0A1W7R9Y4   + More
A0A3S3P0A9   A0A2W1BN41   A0A1Y3BBS5   A0A224X5M4   A0A2L2YM05   A0A0K1IK14   A0A087USZ4   A0A087TI44   A0A087UHT1   A0A087TJZ1   A0A087TUG6   A0A023EX80   A0A131XRY9   A0A0K1IK29   A0A142LX31   O44317   A0A1B6G0A1   A0A0K8TSF0   A0A1E7YVD4   U5EV73   U5EW32   V9H1I9   O46185   A0A224X6B3   U5EVA2   O44315   A0A142LX39   L7MBK1   A0A2R5L945   A0A023EWA3   U5ERW4   U5EG91   A0A2P2I4S9   A0A2E0U2U9   A0A0K8TRR6   A0A0K8TR49   A0A2P2I3J0   A0A224X5X2   A0A2P2HZJ0   A0A0G2LA86   A0A0G2KM65   A0A0J7KB01   O18558  

Pubmed

11319268    7623845    15247245    28756777    26561354    25474469    + More
25527032    26369729    1665124    9364772    25576852    24945155    29337314    23594743   

EMBL

RSAL01000249    RVE43511.1    AB046668    BAB21511.1    D38414    BAA07467.1    + More
NWSH01001820    PCG70022.1    AB211537    BAE44464.1    GFAH01000444    JAV47945.1    NCKU01007943    RWS02258.1    KZ149985    PZC75691.1    MUJZ01028333    OTF78340.1    GFTR01008639    JAW07787.1    IAAA01038678    LAA08500.1    KP771712    AKU04650.1    KK121445    KFM80483.1    KK115320    KFM64783.1    KK119855    KFM76920.1    KK115566    KFM65430.1    KK116791    KFM68755.1    GBBI01004920    JAC13792.1    GEFM01006389    JAP69407.1    KP771711    AKU04648.1    KU543676    AMS38357.1    AF015813    AAB94039.1    GECZ01013919    JAS55850.1    GDAI01000743    JAI16860.1    MAYS01000558    OFC59623.1    GANO01003537    JAB56334.1    GANO01003141    JAB56730.1    X59239    CAA41925.1    U73803    AAB92394.1    GFTR01008411    JAW08015.1    GANO01003496    JAB56375.1    AF015489    AAB94030.1    KU543680    AMS38365.1    GACK01003634    JAA61400.1    GGLE01001887    MBY06013.1    GAPW01000103    JAC13495.1    GANO01003538    JAB56333.1    GANO01003539    JAB56332.1    IACF01003273    LAB68896.1    PABS01000003    MAT33547.1    GDAI01000752    JAI16851.1    GDAI01000751    JAI16852.1    IACF01002963    LAB68595.1    GFTR01008541    JAW07885.1    IACF01001499    LAB67197.1    CR848788    BX908731    LBMM01010475    KMQ87436.1    U87543    AAB65093.1   

Proteomes

UP000283053    UP000218220    UP000285301    UP000054359    UP000000437    UP000036403    + More

PRIDE

Q9BLI5    Q93139    Q3V5Y4   

Pfam

PF00075   RNase_H        + More
PF14529   Exo_endo_phos_2
PF00078   RVT_1

Interpro

IPR036397   RNaseH_sf        + More
IPR002156   RNaseH_domain       
IPR012337   RNaseH-like_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       

SUPFAM

SSF53098   SSF53098        + More
SSF56219   SSF56219       

Gene 3D

3.30.420.10     3.60.10.10    

ProteinModelPortal

A0A3S2NBZ7   Q9BLI5   Q93139   A0A2A4JF48   Q3V5Y4   A0A1W7R9Y4   + More
A0A3S3P0A9   A0A2W1BN41   A0A1Y3BBS5   A0A224X5M4   A0A2L2YM05   A0A0K1IK14   A0A087USZ4   A0A087TI44   A0A087UHT1   A0A087TJZ1   A0A087TUG6   A0A023EX80   A0A131XRY9   A0A0K1IK29   A0A142LX31   O44317   A0A1B6G0A1   A0A0K8TSF0   A0A1E7YVD4   U5EV73   U5EW32   V9H1I9   O46185   A0A224X6B3   U5EVA2   O44315   A0A142LX39   L7MBK1   A0A2R5L945   A0A023EWA3   U5ERW4   U5EG91   A0A2P2I4S9   A0A2E0U2U9   A0A0K8TRR6   A0A0K8TR49   A0A2P2I3J0   A0A224X5X2   A0A2P2HZJ0   A0A0G2LA86   A0A0G2KM65   A0A0J7KB01   O18558  

PDB

1WDU     E-value=1.11498e-09,     Score=152

KEGG

NA   

GO

GO:0016021   GO:0004523   GO:0003676   GO:0003964   GO:0016020   GO:0005886   GO:0007155   GO:0005737   GO:0048869   GO:0016491   GO:0015930  

Length:

426

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.67297

Exp number, first 60 AAs:

0.00249

Total prob of N-in:

0.02275

outside

1  -  426

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain