SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13470
Pre Gene Modal
BGIBMGA010870
Annotation
PREDICTED:_uncharacterized_protein_LOC106130797_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 3.762
 

Sequence

CDS
ATGGCATTAAACGCTCTGCTTATTATATCTTTAGTCGCAGTTTCGAACGCTGAATTTGACTTCGGCACGAACAGTGATGAAGTGATGATAGCACAGGAATCCCAGTACCAGACGCCTGCGCCTGTTAAGATACAGAAGCCAACAGGTGTGACCAATTCTCATCGGCCGCAATACAACTTGGAATCGTTTGAAAATTATAGCTCCGAAAATTTCTTCGAGGCATCTACTCGGAGGCCACTGGTGAAGAATTACAAGTCGGCTGCTAAGATCAGAGCGAAAGAAAGAATGGCGAAGGATGTGGTTTTGAGAGCGTTTGATAAGAAGGACCAGTTGGAGAAGTTCGCACAGATCCTGCCCATTATTAGGGCGATGTCTGGAACGCAACGAGTGGCGCTTGCCTCGCTAGTGGCAGACCAGGTCGCCGCACCCCCAGGACACGTGCCCATCAATCTCTCACAGGTGAGATCCATGTTCGGAAGAACGAATACCACCACAGATCTGATGCTGCCGATTCTACTCCACACTGCCAACCTTATCCGGCGAGCAGTCAGACCGGGCAAGGAAACCAGAGAAGTGAGGCTACCCCAGCCCCAAATCCTAAGACGATCCTTCTCTGAAGACACGCAAGATGAACCATTTGATATAGGAGTTGAAACCAGCACACTGGAATCGACCAGAGCTAGGAACAGAAGGGTGATACCTCCTAGGTCTCTTCTCCCCAGAGCCAATAACACTGCAGATAATAAAACGAATGTTCAGGAAATAAAGCCAATGGAGTTCTTCAATAAAACTGCAATTCAAGCATTACCGAGTACAACGACATCATCTTCACTGAGCACAGCATCACCAAGAAGTAGATCATTAAATTTATTGAAAACGCATCCAAACAACTCATCTTTAGACTTGGTAGCTGAGTCAACCAACCAAACTCTAGCGCAGGATCTACCAGTTGCTGAGAAACTAAGGGCTTTGAACAGATTTGTAGATAGAAAAGGAGCTCTCATAAGACGCGGGACGTATCCACGGAGACCATCGTCGGCAGCCCGGCGCACTACTCCCGAGCCACCTCTGAGCGCCACCCGCCGCCGACCCACACCTGCCAGGAAACTACCGACACTGTCAGCCAATGACTCAGCAAAATGCGAGCTCTTTACCAATTCCCTGTGTCTGCATTCAGAAGACTATCCAACGATGTACGATTAA
Protein
MALNALLIISLVAVSNAEFDFGTNSDEVMIAQESQYQTPAPVKIQKPTGVTNSHRPQYNLESFENYSSENFFEASTRRPLVKNYKSAAKIRAKERMAKDVVLRAFDKKDQLEKFAQILPIIRAMSGTQRVALASLVADQVAAPPGHVPINLSQVRSMFGRTNTTTDLMLPILLHTANLIRRAVRPGKETREVRLPQPQILRRSFSEDTQDEPFDIGVETSTLESTRARNRRVIPPRSLLPRANNTADNKTNVQEIKPMEFFNKTAIQALPSTTTSSSLSTASPRSRSLNLLKTHPNNSSLDLVAESTNQTLAQDLPVAEKLRALNRFVDRKGALIRRGTYPRRPSSAARRTTPEPPLSATRRRPTPARKLPTLSANDSAKCELFTNSLCLHSEDYPTMYD

Summary

Pfam
PF16077   Spaetzle
Interpro
IPR032104   Spaetzle        + More
IPR029034   Cystine-knot_cytokine       
SUPFAM
SSF57501   SSF57501       
Gene 3D

Ontologies

GO

Topology

SignalP
Position:   1 - 17,         Likelihood:  0.973361
 
 
Length:
400
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0529
Exp number, first 60 AAs:
0.04857
Total prob of N-in:
0.00439
outside
1  -  400
 
 

Population Genetic Test Statistics

Pi
22.788801
Theta
20.089919
Tajima's D
0.551948
CLR
1.124557
CSRT
0.539123043847808
Interpretation
Uncertain
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