Silkworm Genome Informatics Database

Gene

KWMTBOMO13464

Annotation

PREDICTED:_THAP_domain-containing_protein_1-like_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr22(+):18146341-18148641 View in EpiBrowser

Transcription factor

THAP

Location in the cell

Nuclear Reliability : 3.884

CDS

ATGGTTTGCTGTGCTGTATCGAATTGTAAAAACACTTCGGTAAAAACATCAAAAAATAAAGATGGAATTACATTCCACAGGTTTCCTCGTGATAAGGAGAGACGGAGACAGTGGGAGAGGGCAATGAACAGGGAGGAAGAATGGAGATCAAGTCCTTTTAGTGCAGTATGCTCGGAACATTTTGGTTGCACTGACTTTTATCTAACTGACAGTGGGCTACGAAGACTATCTGTTAATGCCGTGCCTTGCATTAACATATCTCCATGCCAAGAGCCAGTGCCAACAATTTCAAGACTACCACCAGTGTACATAGATCCATCAGACACAGAAGAAGTCATCAAATTGAAAAACAAAGTTCGGAGATTAGAAATGATAGCCGAGAGCAGGAAACACAAACTCAACCTCGTGTGGCAGAGCAGGAGGAGGTTAAAGAAAAAGTTAGAGTGTATGAAATGTATGGTCAAACATTTAATTAAAATAAAGGACAGTACAAGCTTAGCGGAACAATATAATTGTGAAGTTTCTCATTGA

Protein

MVCCAVSNCKNTSVKTSKNKDGITFHRFPRDKERRRQWERAMNREEEWRSSPFSAVCSEHFGCTDFYLTDSGLRRLSVNAVPCINISPCQEPVPTISRLPPVYIDPSDTEEVIKLKNKVRRLEMIAESRKHKLNLVWQSRRRLKKKLECMKCMVKHLIKIKDSTSLAEQYNCEVSH

Similarity

Belongs to the protein kinase superfamily. Tyr protein kinase family.

Uniprot

A0A2H1WUK2 A0A1E1VYI8 A0A194Q3V2 A0A0L7KTK8 A0A194REN1 A0A3S2TIX3 + More
A0A2A4K5C8 A0A2A4K4Y2 A0A2A4K4M7 A0A1L8H8F0 A0A3S2M4I9 A0A3S2LSN2 A0A3S2LE61 A0A3B5AB60 A0A3S2L9A0 H9JHG4 A0A3N0ZA72

Pubmed

26354079 26227816 27762356 19121390

EMBL

ODYU01011169 SOQ56745.1 GDQN01011302 JAT79752.1 KQ459586 KPI98085.1 + More
JTDY01006020 KOB66364.1 KQ460323 KPJ15919.1 RSAL01000106 RVE47304.1 NWSH01000141 PCG79124.1 PCG79129.1 NWSH01000136 PCG79197.1 CM004469 OCT92316.1 RSAL01000037 RVE51214.1 RSAL01000016 RVE53005.1 RSAL01000187 RVE44781.1 RSAL01000412 RVE41849.1 BABH01012529 RJVU01001088 ROL55327.1

Proteomes

UP000053268 UP000037510 UP000053240 UP000283053 UP000218220 UP000186698 + More
UP000261400 UP000005204

PRIDE

H9JHG4

Pfam

PF05485   THAP        + More
PF07714   Pkinase_Tyr
PF16012   DUF4780

Interpro

IPR038441   THAP_Znf_sf        + More
IPR006612   THAP_Znf
IPR026516   THAP1
IPR011009   Kinase-like_dom_sf
IPR020635   Tyr_kinase_cat_dom
IPR008266   Tyr_kinase_AS
IPR001245   Ser-Thr/Tyr_kinase_cat_dom
IPR000719   Prot_kinase_dom
IPR017441   Protein_kinase_ATP_BS
IPR026521   THAP2
IPR031961   DUF4780

SUPFAM

SSF56112 SSF56112

Gene 3D

3.30.40.180

ProteinModelPortal

A0A2H1WUK2 A0A1E1VYI8 A0A194Q3V2 A0A0L7KTK8 A0A194REN1 A0A3S2TIX3 + More
A0A2A4K5C8 A0A2A4K4Y2 A0A2A4K4M7 A0A1L8H8F0 A0A3S2M4I9 A0A3S2LSN2 A0A3S2LE61 A0A3B5AB60 A0A3S2L9A0 H9JHG4 A0A3N0ZA72

PDB

2D8R E-value=2.68504e-07, Score=126

KEGG

101740360 K23203 THAP domain-containing protein 1/3 | (RefSeq) THAP domain-containing protein 1-like

GO

GO:0003677 GO:0016021 GO:0003676 GO:0005549 GO:0007608 GO:0016020 GO:0006412 GO:0005737 GO:0048869 GO:0016491 GO:0015930

PANTHER

PTHR46600:SF1 PTHR47696

Length:

176

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000940000000000001

Exp number, first 60 AAs:

0.00042

Total prob of N-in:

0.34342

outside

1 - 176

Pi

14.916712

Theta

13.237163

Tajima's D

0.85451

CLR

10.378755

CSRT

0.631768411579421

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics