Gene

KWMTBOMO13461

Pre Gene Modal

BGIBMGA010883

Annotation

histone_H2AX-like_protein_[Bombyx_mori]

Location

Bomo_Chr22(-):18122996-18124270      View in EpiBrowser

Full name

Histone H2A      

Location in the cell

Nuclear   Reliability : 2.746

CDS

ATGAATCGTGGAGCCATTGTAAAGACTAGCAAAAAGAAGTCCGGAAGCAATCGAGCTGGCCTGAGTTTGCCTGTGGGCAGGATCCACAGGATTTTACGCAATGGTAACTACGCCAGTCGCATTGGCACAGGTGCCGCGGTGTATTTGACTGCAGTATTGGAATATTTAGCAGCAGAAATTTTAGAATTGGCCGGAAAAGCTGCCGAAGATAATGGCAGAACTAGGATATCACCACGCCACATCTTGCTCGCTCTTCGTAAGGATGATGAACTTAATAGAATGTTATCGGGTGTGACCATATCTCAGGGAGGAGTTATACCCAGGATTGAACCCCAGTTATTACCTAAAAAAACCGCTATAAAAAGTAATCATTCTAACAACACTAACAACTCATCATCACAAGACTACTAA

Protein

MNRGAIVKTSKKKSGSNRAGLSLPVGRIHRILRNGNYASRIGTGAAVYLTAVLEYLAAEILELAGKAAEDNGRTRISPRHILLALRKDDELNRMLSGVTISQGGVIPRIEPQLLPKKTAIKSNHSNNTNNSSSQDY

Subunit

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.

Similarity

Belongs to the histone H2A family.

Keywords

Acetylation   Chromosome   Direct protein sequencing   DNA-binding   Methylation   Nucleosome core   Nucleus   Phosphoprotein  

Feature

chain  Histone H2A

Uniprot

B9X1S6   H9JMY0   J7GP62   A0A3S2LIC6   A0A194PYI1   A0A2W1BMK9   + More
A0A212FJZ3   A0A183DVE6   A0A1L8DWU8   A0A1J1J6G7   A0A0M3IF21   V3ZBQ9   A0A0N4UPT0   A0A183EX41   B4NRL2   A0A1L8DWE8   A0A0Q9X956   P02269   A0A1B0F9U6   B9A9Z3   A0A0J9Y9E5   A0A1S0TPZ1   A0A0B1SIC4   B4IQA4   A0A1J1J3M7   B4NVV1   A0A0N4TT30   C3YWP1   A0A1Y3B7U7   F1LHT1   A0A1Y3BPP8   A0A044UW04   A0A3B4U7R9   K1RXS6   A0A0B2UQD6   A0A0M3K1Y8   A0A0B2V2B5   A0A0B2V2B0   H9JYG1   C3Z7D8   J9F0N9   A0A3P6USG1   A0A0R3RGP5   A0A1P6CD63   A0A0N4TTK8   A0A1I7VUP4   B0WAK0   A0A0N4ZG82   A0A3Q3WG66   A0A0B2VPY8   A0A044RNL9   C3Z761   A0A232ETM1   K7IY33   A7RJL4   A0A0R3RJU7   B4K329   A0A132ACK3   A0A1I8CEW3   B4IPJ4   A0A0R3NXE7   B4LWQ7   B4N7K1   B4IQC2   A0A2S4PLY6   A0A220K8L4   A0A3L8D4X8   G3P8K7   A0A1U7XY83   Q76FF4   A0A151I9P3   A0A195DKP0   A0A195DKP6   A0A151I9R7   A0A195CLX6   A0A195DA14   Q76FF0   W8C226   E9IU71   A0A154PNG1   F4WQG3   F4WQG6   A0A1A9UHE7   T1DPG5   B3XWN9   A0A195B2R0   A0A195B3A2   A0A195BQR2   A0A034WV55   A0A2A3EQ38   A0A2A3ENQ2   A0A2A3EPA7   A0A0J7KSL7   A0A088A826   A0A088A803   A0A088A7Q5   A0A194Q1I3   A0A195F844   A0A195F711   A0A0C9RPI1  

Pubmed

19121390    23035220    26354079    28756777    22118469    23254933    + More
17994087    6825703    17885136    22384150    18563158    21685128    22992520    25217238    28648823    20075255    17615350    18057021    26555130    26829753    15632085    23185243    28630352    30249741    23773524    14676429    24495485    21282665    21719571    25348373   

EMBL

AB485605    BAH23275.1    BABH01029008    JX154397    ODYU01000145    AFP81724.1    + More
SOQ34420.1    RSAL01000106    RVE47307.1    KQ459586    KPI98083.1    KZ149966    PZC76168.1    AGBW02008175    OWR54058.1    UYRT01079523    VDN20883.1    GFDF01003329    JAV10755.1    CVRI01000069    CRL07048.1    CRL07057.1    CRL07062.1    CRL07067.1    CRL07070.1    KB202685    ESO88463.1    UYYG01000143    UYYG01001212    VDN53547.1    VDN53548.1    VDN60361.1    UYRT01105599    VDN44322.1    CH972509    EDW87001.2    GFDF01003330    JAV10754.1    CH968915    KRG00451.1    CCAG010005505    BABH01043817    BABH01043823    AB480880    BAH22590.1    LN856941    CDQ04386.1    JH712204    EFO18029.1    KN574183    KHJ83287.1    CH686573    EDW44126.1    LN833886    CRG62825.1    CRL07053.1    CH989823    EDX16195.1    UZAD01013252    VDN93026.1    GG666561    EEN55285.1    MUJZ01035170    OTF76922.1    JI226950    ADY49685.1    MUJZ01010474    OTF82047.1    CMVM020000235    JH818024    EKC39821.1    JPKZ01022425    UYWY01025969    KHN71352.1    VDM50115.1    UYRR01031696    VDK52011.1    JPKZ01022204    JPKZ01002642    JPKZ01002585    UYWY01004246    UYWY01019424    UYWY01019800    KHN71446.1    KHN75678.1    KHN75682.1    KHN76018.1    VDM29091.1    VDM37286.1    VDM39311.1    KHN75673.1    VDM29092.1    BABH01043820    GG666590    EEN51734.1    ADBV01004064    EJW80939.1    UYRX01000444    VDK82318.1    LN855600    LN856894    LN854681    CDP91202.1    CDP91204.1    CRZ23642.1    CTP80671.1    UZAD01013266    VDN93225.1    JH712078    EFO18483.1    DS231872    EDS41423.1    JPKZ01001219    KHN83095.1    VDM50116.1    CBVM010000034    EEN51657.1    EEN51661.1    NNAY01002259    OXU21705.1    DS469514    EDO48283.1    CH920686    EDW04768.1    EDW04772.1    JXLN01012662    KPM08726.1    CH681475    EDW54712.1    CH673954    KRT05592.1    KRT05596.1    KRT05599.1    KRT05603.1    KRT05606.1    CH940650    EDW66628.2    CH964214    EDW80340.1    CH687012    EDW44529.1    PEDP01001929    POS83062.1    MF319708    ASJ26422.1    QOIP01000013    RLU15505.1    AB105180    BAD02425.1    KQ978273    KYM95792.1    KQ980765    KYN13416.1    KYN13412.1    KYM95788.1    KQ977600    KYN01472.1    KQ981082    KYN09702.1    AB105181    BAD02429.1    GAMC01006734    JAB99821.1    GL765847    EFZ15871.1    KQ434977    KZC12848.1    GL888273    EGI63563.1    EGI63566.1    GAMD01003354    JAA98236.1    AB249651    BAG68518.1    KQ976641    KYM78766.1    KYM78762.1    KQ976424    KYM88301.1    GAKP01000862    JAC58090.1    KZ288203    PBC33382.1    PBC33347.1    PBC33344.1    LBMM01003594    KMQ93338.1    KQ459580    KPI99183.1    KQ981744    KYN36229.1    KYN36233.1    GBYB01009076    JAG78843.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000007151    UP000050760    UP000183832    + More
UP000036681    UP000030746    UP000038040    UP000274756    UP000007798    UP000092444    UP000001292    UP000000304    UP000038020    UP000278627    UP000001554    UP000024404    UP000261420    UP000005408    UP000031036    UP000050794    UP000267007    UP000036680    UP000004810    UP000277928    UP000050640    UP000006672    UP000095285    UP000002320    UP000038045    UP000261620    UP000215335    UP000002358    UP000001593    UP000001070    UP000095286    UP000001819    UP000008792    UP000237438    UP000279307    UP000007635    UP000189701    UP000078542    UP000078492    UP000076502    UP000007755    UP000078200    UP000078540    UP000242457    UP000036403    UP000005203    UP000078541   

PRIDE

B9X1S6    H9JMY0    P02269    B9A9Z3    B4IQA4    B4NVV1    + More
H9JYG1    B0WAK0    K7IY33    B4K329    B4N7K1    B4IQC2    A0A088A826    A0A088A803    A0A088A7Q5   

Pfam

PF00125   Histone        + More
PF16211   Histone_H2A_C

Interpro

IPR002119   Histone_H2A        + More
IPR009072   Histone-fold       
IPR032454   Histone_H2A_C       
IPR007125   Histone_H2A/H2B/H3       
IPR032458   Histone_H2A_CS       

SUPFAM

SSF47113   SSF47113       

Gene 3D

1.10.20.10    

CDD

cd00074  H2A

ProteinModelPortal

B9X1S6   H9JMY0   J7GP62   A0A3S2LIC6   A0A194PYI1   A0A2W1BMK9   + More
A0A212FJZ3   A0A183DVE6   A0A1L8DWU8   A0A1J1J6G7   A0A0M3IF21   V3ZBQ9   A0A0N4UPT0   A0A183EX41   B4NRL2   A0A1L8DWE8   A0A0Q9X956   P02269   A0A1B0F9U6   B9A9Z3   A0A0J9Y9E5   A0A1S0TPZ1   A0A0B1SIC4   B4IQA4   A0A1J1J3M7   B4NVV1   A0A0N4TT30   C3YWP1   A0A1Y3B7U7   F1LHT1   A0A1Y3BPP8   A0A044UW04   A0A3B4U7R9   K1RXS6   A0A0B2UQD6   A0A0M3K1Y8   A0A0B2V2B5   A0A0B2V2B0   H9JYG1   C3Z7D8   J9F0N9   A0A3P6USG1   A0A0R3RGP5   A0A1P6CD63   A0A0N4TTK8   A0A1I7VUP4   B0WAK0   A0A0N4ZG82   A0A3Q3WG66   A0A0B2VPY8   A0A044RNL9   C3Z761   A0A232ETM1   K7IY33   A7RJL4   A0A0R3RJU7   B4K329   A0A132ACK3   A0A1I8CEW3   B4IPJ4   A0A0R3NXE7   B4LWQ7   B4N7K1   B4IQC2   A0A2S4PLY6   A0A220K8L4   A0A3L8D4X8   G3P8K7   A0A1U7XY83   Q76FF4   A0A151I9P3   A0A195DKP0   A0A195DKP6   A0A151I9R7   A0A195CLX6   A0A195DA14   Q76FF0   W8C226   E9IU71   A0A154PNG1   F4WQG3   F4WQG6   A0A1A9UHE7   T1DPG5   B3XWN9   A0A195B2R0   A0A195B3A2   A0A195BQR2   A0A034WV55   A0A2A3EQ38   A0A2A3ENQ2   A0A2A3EPA7   A0A0J7KSL7   A0A088A826   A0A088A803   A0A088A7Q5   A0A194Q1I3   A0A195F844   A0A195F711   A0A0C9RPI1  

PDB

2PYO     E-value=3.41697e-27,     Score=295

KEGG

100301499    K11251 histone H2A | (RefSeq) H2ax-l; histone H2AX-like protein

GO

GO:0003677   GO:0000786   GO:0005634   GO:0046982   GO:0000790   GO:0006325   GO:0006412   GO:0005737   GO:0048869   GO:0003676   GO:0016491   GO:0015930  

Subcellular location

Nucleus  
Chromosome  

Length:

136

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

9.22562

Exp number, first 60 AAs:

9.14007

Total prob of N-in:

0.64461

outside

1  -  136

 

 

Pi

11.428235

Theta

12.488982

Tajima's D

-0.467389

CLR

0.355702

CSRT

0.250237488125594

Interpretation

Uncertain