Gene

KWMTBOMO13457

Pre Gene Modal

BGIBMGA010885

Annotation

PREDICTED:_radial_spoke_head_protein_3_homolog_B_[Amyelois_transitella]

Location

Bomo_Chr22(-):17452949-17455400      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.386

CDS

ATGAAAGGCATTACCTTAATACCTCTCTTCGATTTTGACTTGGAAGTGCAGCCGATAATTGAAGTGCTGATCGGCAAAACGACAGAGCAGGCCTTGGCTGAAGTGGCCCAGGAGGAGGAGCTGGCGACACTGCGCGAGCAGCAGCGCCGGTACTGCGAGCTGCGGGACGCCGAGCGCGCCGAGAGGCAGAGGCTCGCCGCCCAACACCTGAGGCTGCACGAAGAGAAGGAAAGACGGGTCACCGAGGCGGAAGCCGCCCAAATAGCGGCCATTGAAGCGAGAGAGCGTACCGCCGCTGCTGTACTCGTGCAAGGATACATAGCTGAACTCCTGCCTTCAGTGCTGGCTGGTTTGAGAGACCAAGGATATCTGGTGGAGAGAATAGAGAGAGGAGTCGATGAAGAGTTCATGCCTTGGCTGGTGAAGGAAGTGTCACTGGAGATCGAGTCCATCATCACGAGTCGTGACGTCATCACGGAAATCGTACGTGACGTGGTGGAAGCCAGAGGAGAACTGTACAGAAACGTTGCTGAGAGAGAGGAGAATGAACAGGGGAGGAACGAGCCCGAGGACAGCATCACTCACCCCTCCGCCGTGTCTGAGGAGGGGGAGGAAGAGCGTGAGTATACTTGTTTATAA

Protein

MKGITLIPLFDFDLEVQPIIEVLIGKTTEQALAEVAQEEELATLREQQRRYCELRDAERAERQRLAAQHLRLHEEKERRVTEAEAAQIAAIEARERTAAAVLVQGYIAELLPSVLAGLRDQGYLVERIERGVDEEFMPWLVKEVSLEIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRNEPEDSITHPSAVSEEGEEEREYTCL

Uniprot

H9JMY2   A0A2H1W6G9   A0A2W1BML9   A0A212F3B6   A0A194PXM7   A0A3S2NMJ8   + More
D6WLL4   A0A1Y1NE13   N6UCS1   A0A0T6BFX0   E2BMZ0   A0A0L7RIW4   E0W3K1   A0A195CJU2   K7J0L8   A0A232ERE5   A0A1B6GIY0   A0A1B6DKY5   A0A1B6GCM0   A0A088AHV1   A0A0J7KWG0   A0A026WL04   F4WTL0   A0A3L8D6W2   A0A0A9XPR7   A0A158NGF8   A0A1B6MSV4   A0A0A9XLI6   A0A0K8SRW7   A0A195F1X6   A0A154PS47   E2A9J4   A0A151XBA2   A0A195E7A3   E9I939   A0A0C9QQB3   A0A0C9RC71   A0A0C9PWL1   A0A224XRV0   A0A151I145   A0A2I2Y252   Q8T898   H2XJZ5   A0A0N0BIU4   A0A3B4TER1   T1HAT2   A0A3B4YVG8   G3QMQ1   A0A267DEC2   A0A3B4ZH51   A0A1I8HW35   A0A2G8LDS9   A0A3Q1K2A6   A0A2I3NBN1   A0A2A3EA67   A0A2K5MR19   A0A2I3N1X3   A0A3Q3RR07   A0A2K6MRV6   A0A337SAG0   A0A0F8C8K1   I3JFD2   A0A2K6P9B0   A0A2K5ZYV5   A0A096N0X5   A0A2F0BJ09   A0A3Q1BH65   A0A091DRE1   B0CM43   A0A3P8S2Q7   M3ZBJ3   A0A091I0V5   A0A3B4H8N2   A0A3Q2VUW3   A0A3B4HB00   A0A3P9AUF2   B3RY22   A0A3P8R0P4   A0A369SLD1   A0A2K6D0C1   A0A2K5VVN2   F7GJB5   A0A2K6P9B7   A0A2I3M6Y6   G5BCM0   A0A3P8X401   A0A2Y9FBC9   A0A1U7SRI2   A0A3M6T605   Q4R807   A0A2R8ZKF1   A0A2I3T3D0   A0A0C4DG29   A0A2J8XAZ6   A0A2K5MR14   Q95KH8   A0A1D5Q281   A0A3Q4I1F9  

Pubmed

19121390    28756777    22118469    26354079    18362917    19820115    + More
28004739    23537049    20798317    20566863    20075255    28648823    24508170    21719571    30249741    25401762    21347285    26823975    21282665    22398555    12589069    12481130    15114417    26392545    29023486    17975172    25835551    25186727    25362486    18719581    30042472    17431167    21993625    24487278    30382153    15944441    22722832    16136131    14574404   

EMBL

BABH01029052    BABH01029053    BABH01029054    ODYU01006581    SOQ48546.1    KZ149966    + More
PZC76178.1    AGBW02010583    OWR48230.1    KQ459586    KPI98077.1    RSAL01008030    RVE39812.1    KQ971343    EFA04128.2    GEZM01005363    JAV96204.1    APGK01034095    KB740904    KB632006    ENN78431.1    ERL87976.1    LJIG01000723    KRT86217.1    GL449382    EFN82894.1    KQ414583    KOC70748.1    DS235882    EEB20207.1    KQ977721    KYN00339.1    NNAY01002619    OXU20928.1    GECZ01007373    JAS62396.1    GEDC01010986    JAS26312.1    GECZ01009588    JAS60181.1    LBMM01002579    KMQ94636.1    KK107185    EZA55789.1    GL888341    EGI62431.1    QOIP01000012    RLU16004.1    GBHO01022771    GBRD01009730    JAG20833.1    JAG56094.1    ADTU01014938    GEBQ01000994    JAT38983.1    GBHO01022770    JAG20834.1    GBRD01009732    GDHC01006331    JAG56092.1    JAQ12298.1    KQ981864    KYN34172.1    KQ435119    KZC14729.1    GL437917    EFN69884.1    KQ982335    KYQ57627.1    KQ979568    KYN20976.1    GL761674    EFZ22918.1    GBYB01005889    JAG75656.1    GBYB01004375    GBYB01005890    JAG74142.1    JAG75657.1    GBYB01005888    JAG75655.1    GFTR01005717    JAW10709.1    KQ976580    KYM79922.1    CABD030048713    CABD030048714    CABD030048715    CABD030048716    AB074930    BAB85844.1    EAAA01001637    KQ435726    KOX78162.1    ACPB03015547    ACPB03015548    ACPB03015549    NIVC01004599    PAA47047.1    NIVC01002314    NIVC01000446    PAA58963.1    PAA82813.1    MRZV01000113    PIK58401.1    AHZZ02026000    AHZZ02026001    KZ288310    PBC28608.1    AANG04000169    KQ042552    KKF13810.1    AERX01015266    NTJE010229635    MBW02979.1    KN122124    KFO32835.1    DP000548    ABY56292.1    ADFV01067976    ADFV01067977    ADFV01067978    ADFV01067979    KL218012    KFP01053.1    DS985245    EDV24527.1    NOWV01000006    RDD46833.1    AQIA01049359    JSUE03032532    JH169546    EHB07031.1    RCHS01004216    RMX36801.1    AB168654    BAE00765.1    AJFE02021400    AJFE02021401    AACZ04028794    NBAG03000358    PNI35439.1    AL035530    NDHI03003369    PNJ79172.1    AB060862    BAB46879.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000283053    UP000007266    UP000019118    + More
UP000030742    UP000008237    UP000053825    UP000009046    UP000078542    UP000002358    UP000215335    UP000005203    UP000036403    UP000053097    UP000007755    UP000279307    UP000005205    UP000078541    UP000076502    UP000000311    UP000075809    UP000078492    UP000078540    UP000001519    UP000008144    UP000053105    UP000261420    UP000015103    UP000261360    UP000215902    UP000261400    UP000095280    UP000230750    UP000265040    UP000028761    UP000242457    UP000233060    UP000261640    UP000233180    UP000011712    UP000005207    UP000233200    UP000233140    UP000257160    UP000028990    UP000265080    UP000001073    UP000054308    UP000261460    UP000264840    UP000265160    UP000009022    UP000265100    UP000253843    UP000233120    UP000233100    UP000006718    UP000006813    UP000265120    UP000189704    UP000275408    UP000240080    UP000002277    UP000005640    UP000261580   

PRIDE

H9JMY2   

Pfam

PF06098   Radial_spoke_3        + More
PF00769   ERM
PF00373   FERM_M
PF09379   FERM_N
PF09380   FERM_C

Interpro

IPR009290   Radial_spoke_3        + More
IPR041789   ERM_FERM_C       
IPR018979   FERM_N       
IPR019747   FERM_CS       
IPR019748   FERM_central       
IPR000798   Ez/rad/moesin-like       
IPR011993   PH-like_dom_sf       
IPR018980   FERM_PH-like_C       
IPR000299   FERM_domain       
IPR029071   Ubiquitin-like_domsf       
IPR008954   Moesin_tail_sf       
IPR014352   FERM/acyl-CoA-bd_prot_sf       
IPR019749   Band_41_domain       
IPR011259   ERM_C_dom       
IPR035963   FERM_2       

SUPFAM

SSF54236   SSF54236        + More
SSF48678   SSF48678       
SSF47031   SSF47031       

Gene 3D

1.20.80.10     1.25.40.1020     2.30.29.30    

CDD

cd14473  FERM_B-lobe
cd13194  FERM_C_ERM

ProteinModelPortal

H9JMY2   A0A2H1W6G9   A0A2W1BML9   A0A212F3B6   A0A194PXM7   A0A3S2NMJ8   + More
D6WLL4   A0A1Y1NE13   N6UCS1   A0A0T6BFX0   E2BMZ0   A0A0L7RIW4   E0W3K1   A0A195CJU2   K7J0L8   A0A232ERE5   A0A1B6GIY0   A0A1B6DKY5   A0A1B6GCM0   A0A088AHV1   A0A0J7KWG0   A0A026WL04   F4WTL0   A0A3L8D6W2   A0A0A9XPR7   A0A158NGF8   A0A1B6MSV4   A0A0A9XLI6   A0A0K8SRW7   A0A195F1X6   A0A154PS47   E2A9J4   A0A151XBA2   A0A195E7A3   E9I939   A0A0C9QQB3   A0A0C9RC71   A0A0C9PWL1   A0A224XRV0   A0A151I145   A0A2I2Y252   Q8T898   H2XJZ5   A0A0N0BIU4   A0A3B4TER1   T1HAT2   A0A3B4YVG8   G3QMQ1   A0A267DEC2   A0A3B4ZH51   A0A1I8HW35   A0A2G8LDS9   A0A3Q1K2A6   A0A2I3NBN1   A0A2A3EA67   A0A2K5MR19   A0A2I3N1X3   A0A3Q3RR07   A0A2K6MRV6   A0A337SAG0   A0A0F8C8K1   I3JFD2   A0A2K6P9B0   A0A2K5ZYV5   A0A096N0X5   A0A2F0BJ09   A0A3Q1BH65   A0A091DRE1   B0CM43   A0A3P8S2Q7   M3ZBJ3   A0A091I0V5   A0A3B4H8N2   A0A3Q2VUW3   A0A3B4HB00   A0A3P9AUF2   B3RY22   A0A3P8R0P4   A0A369SLD1   A0A2K6D0C1   A0A2K5VVN2   F7GJB5   A0A2K6P9B7   A0A2I3M6Y6   G5BCM0   A0A3P8X401   A0A2Y9FBC9   A0A1U7SRI2   A0A3M6T605   Q4R807   A0A2R8ZKF1   A0A2I3T3D0   A0A0C4DG29   A0A2J8XAZ6   A0A2K5MR14   Q95KH8   A0A1D5Q281   A0A3Q4I1F9  

KEGG

101746463    no KO assigned | (RefSeq) radial spoke head protein 3 homolog B

GO

GO:0031514   GO:0005929   GO:0005856   GO:0003779  

PANTHER

PTHR21648  

Length:

212

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0388

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01281

outside

1  -  212

 

 

Pi

23.973262

Theta

25.264777

Tajima's D

-0.140902

CLR

4.209007

CSRT

0.342682865856707

Interpretation

Uncertain