Gene

KWMTBOMO13455  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010867

Annotation

40S_ribosomal_protein_S4_[Bombyx_mori]

Location

Bomo_Chr22(+):17431561-17436755      View in EpiBrowser

Full name

40S ribosomal protein S4      

Location in the cell

Mitochondrial   Reliability : 2.685

CDS

ATGGCGCGAGGCCCTAAGAAGCATTTGAAGCGCTTAAACGCTCCCAAAGCATGGATGTTGGACAAACTTGGCGGTGTGTATGCACCGAGACCGTCAACCGGTCCCCACAAGTTGCGCGAGTGCTTGCCCCTGGTGATTTTCCTGAGGAATCGTCTGAAGTATGCTTTGACCGGAAACGAAGTCCTGAAAATTGTGAAACAACGCCTCATAAAGGTTGATGGGAAAGTTAGGACTGACCCTACTTATCCTGCTGGATTTATGGATGTTGTCTCAATTGAGAAGACTAATGAACTGTTTCGTCTAATCTATGATGTTAAGGGCAGATTCACAATCCACCGTATCACCCCTGAGGAGGCTAAGTACAAGTTGTGTAAAGTCAAGCGTGTGGCGACCGGACCTAAGAATGTTCCGTACTTGGTAACGCATGATGGCCGCACCATCCGCTATCCAGACCCACTTATCAAAGTCAACGATTCCATCCAGTTAGACATTGCAACTACGAAGATTATGGACTTCATCAAGTTTGAGTCCGGGAACTTGTGTATGATCACGGGAGGCCGTAACTTGGGGCGCGTGGGCACCATCGTGTCCCGCGAGAGACATCCCGGCTCCTTCGACATTGTGCACATCAAGGACTCCACGGGACACACCTTCGCCACGAGGTTGAACAACGTGTTCATAATCGGCAAGGGCACGAAGGCGTACATCTCGCTGCCGCGCGGCAAGGGCATCCGCCTCACCATCGCCGAGGAGCGGGACAAGCGCATCGCAGCCAAGGTCGCCGCGCAGTAG

Protein

MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAKVAAQ

Similarity

Belongs to the eukaryotic ribosomal protein eS4 family.

Keywords

Complete proteome   Reference proteome   Ribonucleoprotein   Ribosomal protein   RNA-binding   rRNA-binding  

Feature

chain  40S ribosomal protein S4

Uniprot

Q5UAP0   D1LYL8   Q95V34   A0A3G1T1F3   A0A3S2L7A8   A0A2H1W659   + More
E7DZ29   I4DM19   I4DIE0   A0A212FPM1   S4NVQ2   G0ZEE7   A0A3B0ESU9   H9JMW4   A0A2W1BM92   A0A194RF47   A0A194Q3U2   Q4GXU2   A0A067RCU4   D6WLJ6   Q4GXU6   A0A1W4WAS3   V5GSH5   Q1W2A7   A0A1B0GKN3   Q4GXU3   A0A151I1K4   A0A1B6GS17   A0A1B6HVN1   F4X6J1   Q4GXU7   A0A069DR13   A0A1L8DS74   A5HMP6   A0A0A9X119   Q4GXU4   A0A0J7L2G5   A0A151ILM3   E9J5Z4   A0A171B9C1   J3JYD8   A0A0X7YJG0   D1M809   A0A0P4VRS9   R4FND3   A0A2R7X297   K7IPM9   A0A0L7RIZ8   A0A195F289   Q56FH2   R4WDI1   V9IIQ6   A0A088AHT9   E2CA32   A0A0K8TR13   A0A0N0BIM2   A0A0L7L2L3   A0A1D1Y5R4   A0A026WU17   E2AHW7   A0A2A3EA30   A0A1D2MVT5   A0A0P5HQ76   A0A226EN14   J9JIX3   A0A164Q880   A0A2H8TG95   B1GS88   A0A1Y1NID0   A0A0P5JPG0   A0A0P5HQ22   A0A1B0GD46   A0A1A9Y3A2   A0A240SXG1   A0A1A9ZS93   A0A1A9WG91   A0A1L8EAX1   A0A0K8W3G5   A0A0M4EK98   A0A0P5HZF9   A0A0N8AQE4   A0A0N8A3T8   A0A0P6GBB6   B4LC10   A0A0P6A149   A0A0P5BFW4   A0A0A1X5D3   A0A0P6FGM1   A0A0P5BS12   B4KZS2   A0A1I8N0V3   B3MAZ3   A0A0P5BG42   T1JIB6   Q2M038   B4GS62   A0A0P5WDT7   X2JGM9   B4HGP0   B4QIZ0  

Pubmed

14668217    22651552    22118469    23622113    19121390    28756777    + More
26354079    24845553    18362917    19820115    21719571    26334808    25401762    26823975    21282665    22516182    27129103    20075255    23691247    20798317    26369729    26227816    24508170    27289101    18348209    28004739    17994087    25830018    25315136    18057021    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22936249   

EMBL

AY769318    GU084292    ACY95325.1    AF429978    MG992367    AXY94805.1    + More
RSAL01000106    RVE47314.1    ODYU01006581    SOQ48548.1    HQ424732    ADT80676.1    AK402337    BAM18959.1    AK401058    BAM17680.1    AGBW02001598    OWR55701.1    GAIX01012862    JAA79698.1    JF265025    AEL28856.1    RBVL01000195    RKO10879.1    BABH01029054    KZ149966    PZC76179.1    KQ460323    KPJ15925.1    KQ459586    KPI98075.1    AM048931    CAJ17169.1    KK852588    KDR20779.1    KQ971343    EFA03441.1    AM048927    GALX01001347    JAB67119.1    DQ445520    ABD98758.1    AJWK01030744    AM048930    CAJ17168.1    KQ976580    KYM79887.1    GECZ01004616    JAS65153.1    GECU01028954    JAS78752.1    GL888818    EGI57951.1    AM048926    CAJ17164.1    GBGD01002569    JAC86320.1    GFDF01004795    JAV09289.1    EF541363    ABQ18253.1    GBHO01029187    GBRD01013469    GDHC01004970    JAG14417.1    JAG52357.1    JAQ13659.1    AM048929    CAJ17167.1    LBMM01001068    KMQ96987.1    KQ977104    KYN05779.1    GL768221    EFZ11726.1    GEMB01000113    JAS02998.1    BT128264    AEE63224.1    KC507302    AHB12425.1    GU120433    ACY71283.1    GDKW01001320    JAI55275.1    ACPB03000007    GAHY01000613    JAA76897.1    KK856327    PTY25500.1    KQ414583    KOC70721.1    KQ981864    KYN34204.1    AY961528    AK417539    BAN20754.1    JR049381    AEY60945.1    GL453920    EFN75187.1    GDAI01001253    JAI16350.1    KQ435727    KOX77911.1    JTDY01003327    KOB69733.1    GDJX01017957    JAT49979.1    KK107109    EZA59111.1    GL439602    EFN66957.1    KZ288310    PBC28587.1    LJIJ01000472    ODM97106.1    GDIQ01226455    JAK25270.1    LNIX01000002    OXA59022.1    ABLF02027176    LRGB01002451    KZS07519.1    GFXV01001289    MBW13094.1    AM492668    CAM34499.1    GEZM01003689    JAV96630.1    GDIQ01200273    JAK51452.1    GDIQ01226501    JAK25224.1    CCAG010002315    JXJN01012032    GFDG01003086    JAV15713.1    GDHF01006663    JAI45651.1    CP012525    ALC44564.1    GDIQ01222798    JAK28927.1    GDIQ01253107    JAJ98617.1    GDIP01185233    JAJ38169.1    GDIQ01047377    JAN47360.1    CH940647    EDW69810.1    GDIP01035907    JAM67808.1    GDIP01185283    JAJ38119.1    GBXI01008424    JAD05868.1    GDIQ01048874    JAN45863.1    GDIP01185284    JAJ38118.1    CH933809    EDW19028.1    CH902618    EDV40259.1    KPU78464.1    GDIP01185232    JAJ38170.1    JH431533    CH379069    EAL31098.1    CH479188    EDW40597.1    GDIP01088358    JAM15357.1    AE014296    AHN58080.1    CH480815    EDW41348.1    CM000363    CM002912    EDX10321.1    KMY99357.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000276569    UP000053240    UP000053268    + More
UP000027135    UP000007266    UP000192223    UP000092461    UP000078540    UP000007755    UP000036403    UP000078542    UP000015103    UP000002358    UP000053825    UP000078541    UP000005203    UP000008237    UP000053105    UP000037510    UP000053097    UP000000311    UP000242457    UP000094527    UP000198287    UP000007819    UP000076858    UP000092444    UP000092443    UP000092460    UP000092445    UP000091820    UP000092553    UP000008792    UP000009192    UP000095301    UP000007801    UP000001819    UP000008744    UP000000803    UP000001292    UP000000304   

PRIDE

Q5UAP0    Q95V34    H9JMW4    Q4GXU6    Q56FH2    A0A088AHT9    + More
X2JGM9   

Pfam

PF00467   KOW        + More
PF08071   RS4NT
PF16121   40S_S4_C
PF00900   Ribosomal_S4e
PF01479   S4

Interpro

IPR013845   Ribosomal_S4e_central_region        + More
IPR038237   Ribosomal_S4e_central_sf       
IPR018199   Ribosomal_S4e_N_CS       
IPR041982   KOW_RPS4       
IPR002942   S4_RNA-bd       
IPR005824   KOW       
IPR014722   Rib_L2_dom2       
IPR000876   Ribosomal_S4e       
IPR013843   Ribosomal_S4e_N       
IPR032277   40S_S4_C       

Gene 3D

2.30.30.30     2.40.50.740    

CDD

cd00165  S4
cd06087  KOW_RPS4

ProteinModelPortal

Q5UAP0   D1LYL8   Q95V34   A0A3G1T1F3   A0A3S2L7A8   A0A2H1W659   + More
E7DZ29   I4DM19   I4DIE0   A0A212FPM1   S4NVQ2   G0ZEE7   A0A3B0ESU9   H9JMW4   A0A2W1BM92   A0A194RF47   A0A194Q3U2   Q4GXU2   A0A067RCU4   D6WLJ6   Q4GXU6   A0A1W4WAS3   V5GSH5   Q1W2A7   A0A1B0GKN3   Q4GXU3   A0A151I1K4   A0A1B6GS17   A0A1B6HVN1   F4X6J1   Q4GXU7   A0A069DR13   A0A1L8DS74   A5HMP6   A0A0A9X119   Q4GXU4   A0A0J7L2G5   A0A151ILM3   E9J5Z4   A0A171B9C1   J3JYD8   A0A0X7YJG0   D1M809   A0A0P4VRS9   R4FND3   A0A2R7X297   K7IPM9   A0A0L7RIZ8   A0A195F289   Q56FH2   R4WDI1   V9IIQ6   A0A088AHT9   E2CA32   A0A0K8TR13   A0A0N0BIM2   A0A0L7L2L3   A0A1D1Y5R4   A0A026WU17   E2AHW7   A0A2A3EA30   A0A1D2MVT5   A0A0P5HQ76   A0A226EN14   J9JIX3   A0A164Q880   A0A2H8TG95   B1GS88   A0A1Y1NID0   A0A0P5JPG0   A0A0P5HQ22   A0A1B0GD46   A0A1A9Y3A2   A0A240SXG1   A0A1A9ZS93   A0A1A9WG91   A0A1L8EAX1   A0A0K8W3G5   A0A0M4EK98   A0A0P5HZF9   A0A0N8AQE4   A0A0N8A3T8   A0A0P6GBB6   B4LC10   A0A0P6A149   A0A0P5BFW4   A0A0A1X5D3   A0A0P6FGM1   A0A0P5BS12   B4KZS2   A0A1I8N0V3   B3MAZ3   A0A0P5BG42   T1JIB6   Q2M038   B4GS62   A0A0P5WDT7   X2JGM9   B4HGP0   B4QIZ0  

PDB

4V6W     E-value=5.4322e-123,     Score=1126

KEGG

692714    K02987 small subunit ribosomal protein S4e | (RefSeq) RpS4; ribosomal protein S4

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0019843   GO:0006412   GO:0005840   GO:0003723   GO:0022627   GO:0016021   GO:0005622   GO:0005737   GO:0048869   GO:0003676   GO:0016491   GO:0015930  

PANTHER

PTHR11581  

Length:

263

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00504

Exp number, first 60 AAs:

0.0004

Total prob of N-in:

0.09665

outside

1  -  263

 

 

Pi

17.295132

Theta

18.451258

Tajima's D

-0.248064

CLR

0.439438

CSRT

0.311334433278336

Interpretation

Uncertain