SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13452  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA010888
Annotation
PREDICTED:_glycogen_debranching_enzyme_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.163 Nuclear   Reliability : 1.019
 

Sequence

CDS
ATGGCGATCGAGCGCAGCGCTGCCGCGGAGGCCGCGCGTGCCCCCGCCACGCCCACCGCAGCCCCCCTGCCCGCCCCCACCACCGTCATCACCCTCGAACACGGGGAGCATTTTGACTCTACGTTATATAGATTTGAAAAAGGCTGCTATTTACAATTTTGTCCCGGACCAAGTTTATTAGGCCGGAAGGTGTTCCTTTACACTAATTATGTGCTCACTGATGATGAACAAGACGATCAATCCGAGTTCATCCGCAATCAGTACTACGGGCTGGAGTGGCGCGCCGAGGGGGAGGAGGGAGAGAAGGGCGAGTCGTTGGGAGCCGGGCCCCTCGTCACCGACACCGACCTCTACTGTAAGATCAAGCTGGCCAGGGCTGGCTCCTTCCATTTCTACTTCGTCTATGATAATGCAGAATCTAAGATAGGTCCCCAAGGCTCGGGCTGGTTCCACGTGGCGCCGACGCTGCGCGCGGGCCCGGGCGGCGCGGCGCGCATCCCGCTGGACGGCGTCGCCATGCAGACCGTGCTGGCCAAGAGCCTGGGCCCCTTGCCGCGCTGGGAGAACACGCTCAGGGTCGCCAAAGAGACGGGCTATAATATGATACATTTTACTCCTATACAGGAGCTGGGCGGCTCCAACTCGAGCTACAGCATCGCCAACCAGCTGAAGCTGAACCCTCGCTTCGGGCAGGACACGGGGCGGGAGGTCACCTTCGCTGACGTCGAGAACATTGTCGCCAAGATCAAAAACGACTGGAACATGCTGTCGATATGCGACGTGGTGCTGAACCACACGGCCAACGAGACGAGCTGGGTGGCGGAGCACCCCGAGGCCACGTACAACTGCGGCTCGTGCGCCTACCTGCGCCCCGCCGCGCTGCTGGACGCCGCGCTCGCCGCCCTCACCGCGCGCGTCGCCCGCGCCCTGCACGCGCCGCCCGTGCCGCCGCGCGTCACGCAACACGCGCACGTCGAGGCCATCAAACACATATTGGAGACGCAGGTAGTCCCAGAGCTGCGCCTGCACGAAATGTACATGTGCAATGTGTCGGAGCTAGTCCAGGAGTTCTACTTTTTGGCGAGAAACAAGGTGCCGGCGGTGAAGGCCCCGGCGGAGGCGGAGCGGCCGGTGCTGAAGCTGGTGGAGGACCCGCAGTACCGCCGCCTCCGCGCCACCGTCGACCTGGACGCCGCTCTGCAGCTCTACAACGTGTACAGGTCGGAGTGTTACGACGAGGAGTCCCGCCTCAAGAAATGCTGTGAGGAGTTGAAGCTGAACCTGGAGCAGCTGAACGAGGCGGCCGCGGAGCAGGTGCGGGGACACCTCCGCGCCGCCGTCGACAACGTGGTCGCCGGCATGAGGTACTACCGCCTGCAATCGGACGGACCCAAGATCGAGGAAGTCAGCGCTAAGAATCCGCTGGTGCCGAGGTACTTCACGTGGGCGTGCGACGTGGAGTCGTGCAGCAGCGCGGAGGTGGAGGCGGCGCTGTACGGGGGGGAGGGGGGCGCGGTGATGGCGCACAACGGCTGGGTCATGGGGGCCGACCCCCTCACGGACTTCGCCGCGCGCCCCGCCGCCGCCGTCTACCTGCGCCGTGACCTGCTGGCCTGGGGGGACTCCATCAAGCTCAGGTACGGCGACAAGCCGGAGGACAGCCCGTTCCTGTGGGCGCACATGCGGGAGTACGTGGAGCTCACGGCCGAAGTGTTCGACGGACTGCGCCTCGACAACTGCCACTCCACGCCGCTGCACGTGGCGGAGTACATGCTGGACTGCGCGCGCAACGTCAAGCCGGACCTGTACGTGGTGGCGGAACTCTTCACCAACTCCGACCACGTTGACAACATCTTCGTCAACCGACTGGGCATCACTTCTCTCATCAGAGAGGCTCAGAGCGCGTGGGACTCGCACGAGCAGGGCCGGCTCCTGCACCGGTTCGGGGGGCGCGGCGCGGGGGCCTTCATGTGGGGGGGGCCGCGCCCCGCCGTGCCGCACGTGGCGCGCGCCGCGCTCTACGACCTCACGCACGACAACCCCTCGCCCATCGACAAGAGATCCGTCTGGGATTTGTTGCCGTCGTCGGCCTTGGTGTCCATGGCCTGCTGCGCCACGGGGAGCACGCGCGGCTACGACGAGCTGGTCCCCCACCACGTCCACGTGGTCGACGAGTCGCGGCTGTACTGCGAGTGGAGCGAGGGCGCGGAGCCGGCCGAGGGCGGCGTGGGCCCCGCCTGCGGGATCCTGGCCGCCAAGCGAGCCCTCAACGAGCTGCACCTACAGCTGGCCCAGGGCGGCTACGACGAGGTGTACGTGGACCAGATGGACGCTGACGTGGTGGCCGTGACGCGCCACGAGCCGCGCTCCCGCCGCTCCGTCATCGCCGTCGCCTTCACCGCCTTCCGCCCCCCCGCCGCCGCCGCCCGCCGCGCGCCCCCACCCCTCCGCTTTGAGGGACAGCTCGAGCAGATCCTCATCGAAACTGGATTGAGAATCAAGGACCACACGGCCGGCCCGTTCTCGAAGCACCCCCGCTACATCACCGGGCTCGCGCAGTACGACGCGCCCGTGCGCCGCGACGTGCCGCTCGCGCAGTCCGACGTGTTCGCCGCGGAGAGGACCGAAGGACAAACCACGATCTTGGAATTCAAGCCCTTATCCCCGGGCACTGTGGTCGTCATTCGCGTGGCGCCGCGCCCGGCCGCCGCCAGCGCCGTGGCCGCGCTGCACAGGCACATGGAGCTGGCGGGCGGCGGCGACCCGTACGGCCTGCAGCCGGCCCTGGCCGAGCTCGACCTGGTGGACTTCAACGTGCTGCTGTACAGATGCGACGCGGAGGAGAGGGACGCGGGGGGCGGCGGAGTCTACGACGTGCCGGGCCACGGGCCCCTCGTGTACGCCGGCCTGCAGGGCGTGATCTCGTTACTCTCGGAGATAACTCCCAACGACGACCTGGGTCACCCGCTGTGCGACAACCTGCGCGCCGGGGACTGGCTCATGGACTACACGTGCGCGCGCCTGGAGAGGGACCCCAGACTGGCTGCCGTGGCCGCCAAGTACAGGGAGGCGTTCCGGCCCATCTCTGCGCTGCCCCGGTTCCTGGTGCCGGCGTACTTCGCGGCGGCGGCGGGTGCGCTGCACGGCGCGCTGGTGGCGGCGGCGCTGCGGCGGCTGCGCGCGCCCGCGGGGACCCTGCGCGCCGCGCTCGCGCTCACCAGCGTGCAGCTCACAGGGCACGTGCCGAGCGCGACCCTGCCCGCGCCGCTCCCCGCGCCCCCCACCGCGCCGGCCCCCCGCGGCCCCCGCCCCGGCTCGCTGTCCGCCGGCCTGCCGCACTTCGTGGTGGGCTACACGCGCTGCTGGGGGCGCGACACCTTCATAGCGCTCCGCGGCATGTTCCTGCTCACCGGGAGATACGAGGACGCTCGCCTCCACATACTGTCGTACGGGGCGTGTCTCCGGCACGGCCTGATCCCCAACCTGCTGGACTGCGGGAAGAACGCGCGCTACAACTGCCGCGACGCCGTGTGGTGGTGGCTCTACTGCGTGCAGCAGTATTGTAAGGAGGCCCCGGACGGGCTGTCCCTCCTGTCGGAGCCGGTGTGTCGGCTGCAGGCGCGCGAGGAGGGCGCCCCCGCCGCCGCGCCGCTGCACGAGCTGCTGCAGGACGCGCTCGACACGCACTTCCAGGGCCTCGTGTTCCGCGAGAGGAACGCCGGCAGGACCATCGACGCGCACATGACCGACAAGGGTTTTAATGTGCAAATCGGCATCGACCCAGAAACCGGGTTCCCGTTCGGTGGCAACGACTCGAATTGCGGCACGTGGATGGACAAGATGGGGTCGTCCGACAAGGCGGGCAACCGCGGACAGCCCGCCACCCCCCGGGACGGCAGCGCCATCGAGCTGGTCGCGCTGGCCTACAGCACCGCGCGCTGGCTGGCCGAGCTGCACCGCGCCGGGCGCTACCCGACCCCGGGGCTGGTGCGCCGCCACCGGGACGGCACGCTCACCTCCTGGACCTTCGCGCAGTGGGCCGACCGCATCCGGGCCTCCTTCGAGCGCCACTTCTGGGTCCCGCCGACCCCCGCCGCGCCCGACGCGCGCCCCGACCTGGTGCACCGCCGCGCCATCTACAAGGACACGCACGGCGCCTCGCGGCCCTGGGCCGACTACCAGCTGCGTTGCAACTTCCCCGTGGCCATGGCGCTCGCCCCCGACCTGTTCGACCCGCGCCACGCCTGGCAGGCCCTGGATCAGGTCGAGAAGCTGCTGCTGGGGCCGCTCGGCGTGAAGACGCTGGACCCGGCCGACTGGGCCTACCGACCGGACTACGACAACTCCAACGACTCGGACGACCCGAGCGTCGCGCACGGCTTCAACTACCACCAGGGCCCCGAGTGGGGCTGGCCGCTCGGCTTCTACGTGCGCGCGCGCCTGGCCTTCGCGCACCCCTGCGGCAAGCACGCCCGCGCCGTCGCCGCCGGGGCCCGGCCGGCGGCGCGCACCATCTACAACCTGCTGCAGGGCGGCCGCGACAGGCCGCTCTCTACCGTCGTGTACAGCGACCGGCTGCTGCGCTACGGGCTGCCGCTGCCGGTGCGCGTGGGGCGGCGCCGCCTGTGGGACGAGCTCGGCCGCGGCGCCGTCACGGAGCGTCGCGCCGCCGGGCCCCGCGCCGCGCACGTCCTGTCCCTCCCGCCGGTGCCGCGACTCGCCCCCCGCGCCGGGCCCCTGCTGGGTATCCCTTCTCCCAACGATTGTACAAAGTATTATCCGCGACGACAATTTCGATTTAGATCTTCTCGAAGACGAATCTTCATCCTGCCGGCCGATTGTCATTTCTTGGAATCGATCCTGTGGGAGGGCGAATCGGTTCACCGCTCTCTTGACTACCGGCAGCCCGCGGGTGGCGTCGAGCCCTGCCGCCCGCGCCCGGTCGCTCTGAAGCGGCTCTCTCGGATGTCTTCGGCCTGCGGCTCCGCGCTGGAGGAGCCGGACGAAGGGGGGATCCGGCCCCAGTTCGCGATGCCGGACGACGAGAGGGCGGCGGGCGGGGCGGGCGGGGAGGAGGAGGGGAGCGAGGGGGAGGCGGCGGAGCTGACGTACGAGGCGCTAGTGAAGCCCTCCCCGCGGGTCAGCGTCATCAATTTGTCGGAGCGGCAGAACAACAAGGCGGCGTGGCGGCCGCTGGAGCGCAAGGTCCTGAACACGGCGCGCGAGGGGGCGGGGGCGGGGGGGCGCGGGGCGCGGCTGCAGCGGGCCACGCTGCGCGCGCTGCTCTCCTTCTCGGGGCTCTTCTACACGGTCGCCTTCCTCACCTTCTACTTCCTGAGCTTGCCGTGA
Protein
MAIERSAAAEAARAPATPTAAPLPAPTTVITLEHGEHFDSTLYRFEKGCYLQFCPGPSLLGRKVFLYTNYVLTDDEQDDQSEFIRNQYYGLEWRAEGEEGEKGESLGAGPLVTDTDLYCKIKLARAGSFHFYFVYDNAESKIGPQGSGWFHVAPTLRAGPGGAARIPLDGVAMQTVLAKSLGPLPRWENTLRVAKETGYNMIHFTPIQELGGSNSSYSIANQLKLNPRFGQDTGREVTFADVENIVAKIKNDWNMLSICDVVLNHTANETSWVAEHPEATYNCGSCAYLRPAALLDAALAALTARVARALHAPPVPPRVTQHAHVEAIKHILETQVVPELRLHEMYMCNVSELVQEFYFLARNKVPAVKAPAEAERPVLKLVEDPQYRRLRATVDLDAALQLYNVYRSECYDEESRLKKCCEELKLNLEQLNEAAAEQVRGHLRAAVDNVVAGMRYYRLQSDGPKIEEVSAKNPLVPRYFTWACDVESCSSAEVEAALYGGEGGAVMAHNGWVMGADPLTDFAARPAAAVYLRRDLLAWGDSIKLRYGDKPEDSPFLWAHMREYVELTAEVFDGLRLDNCHSTPLHVAEYMLDCARNVKPDLYVVAELFTNSDHVDNIFVNRLGITSLIREAQSAWDSHEQGRLLHRFGGRGAGAFMWGGPRPAVPHVARAALYDLTHDNPSPIDKRSVWDLLPSSALVSMACCATGSTRGYDELVPHHVHVVDESRLYCEWSEGAEPAEGGVGPACGILAAKRALNELHLQLAQGGYDEVYVDQMDADVVAVTRHEPRSRRSVIAVAFTAFRPPAAAARRAPPPLRFEGQLEQILIETGLRIKDHTAGPFSKHPRYITGLAQYDAPVRRDVPLAQSDVFAAERTEGQTTILEFKPLSPGTVVVIRVAPRPAAASAVAALHRHMELAGGGDPYGLQPALAELDLVDFNVLLYRCDAEERDAGGGGVYDVPGHGPLVYAGLQGVISLLSEITPNDDLGHPLCDNLRAGDWLMDYTCARLERDPRLAAVAAKYREAFRPISALPRFLVPAYFAAAAGALHGALVAAALRRLRAPAGTLRAALALTSVQLTGHVPSATLPAPLPAPPTAPAPRGPRPGSLSAGLPHFVVGYTRCWGRDTFIALRGMFLLTGRYEDARLHILSYGACLRHGLIPNLLDCGKNARYNCRDAVWWWLYCVQQYCKEAPDGLSLLSEPVCRLQAREEGAPAAAPLHELLQDALDTHFQGLVFRERNAGRTIDAHMTDKGFNVQIGIDPETGFPFGGNDSNCGTWMDKMGSSDKAGNRGQPATPRDGSAIELVALAYSTARWLAELHRAGRYPTPGLVRRHRDGTLTSWTFAQWADRIRASFERHFWVPPTPAAPDARPDLVHRRAIYKDTHGASRPWADYQLRCNFPVAMALAPDLFDPRHAWQALDQVEKLLLGPLGVKTLDPADWAYRPDYDNSNDSDDPSVAHGFNYHQGPEWGWPLGFYVRARLAFAHPCGKHARAVAAGARPAARTIYNLLQGGRDRPLSTVVYSDRLLRYGLPLPVRVGRRRLWDELGRGAVTERRAAGPRAAHVLSLPPVPRLAPRAGPLLGIPSPNDCTKYYPRRQFRFRSSRRRIFILPADCHFLESILWEGESVHRSLDYRQPAGGVEPCRPRPVALKRLSRMSSACGSALEEPDEGGIRPQFAMPDDERAAGGAGGEEEGSEGEAAELTYEALVKPSPRVSVINLSERQNNKAAWRPLERKVLNTAREGAGAGGRGARLQRATLRALLSFSGLFYTVAFLTFYFLSLP

Summary

EMBL
ODYU01008617    SOQ52356.1    KQ459586    KPI98071.1    KX147680    ARI45581.1    + More
KQ414786    KOC60813.1    KQ434896    KZC10742.1    KZ288391    PBC26357.1    ADTU01024457    ADTU01024458    KQ981208    KYN44656.1    KB632100    ERL88846.1    APGK01041757    KB740997    ENN75845.1    GL449658    EFN82290.1    QOIP01000010    RLU17593.1    KK107374    EZA51596.1    UFQT01001761    SSX31693.1    SSX31692.1    UFQT01002921    SSX34289.1    KQ435789    KOX74487.1    GDIP01179215    JAJ44187.1    GDIP01194666    JAJ28736.1    GDIP01201817    GDIP01111418    GDIP01044134    JAL92296.1    GDIP01199161    JAJ24241.1    GDIP01072629    JAM31086.1    GDIP01122822    JAL80892.1    GDIP01084523    JAM19192.1    GDIQ01007066    JAN87671.1    GDIP01205511    JAJ17891.1    GDIP01199162    JAJ24240.1    GDIP01203361    JAJ20041.1    GDIP01235107    JAI88294.1    GDIP01046881    JAM56834.1    GDIQ01069980    JAN24757.1    GDIP01084525    JAM19190.1    GDIP01012168    JAM91547.1    GDIP01084524    JAM19191.1    LRGB01002849    KZS06140.1    GDIP01124820    JAL78894.1    GDIP01048578    JAM55137.1    AMQN01005970    KB297235    ELU10759.1    GDIP01251954    JAI71447.1    GDIQ01224532    JAK27193.1    KB201802    ESO94506.1    GDIP01086026    JAM17689.1    GDIP01084526    JAM19189.1    GDIP01130323    JAL73391.1    GDIQ01203334    JAK48391.1    GDIP01094273    GDIP01071324    JAM32391.1    GDIQ01143613    JAL08113.1    GDIQ01045852    JAN48885.1    GDIQ01137908    JAL13818.1    GDIP01109072    JAL94642.1    GDIQ01094524    JAL57202.1    GDIQ01124964    JAL26762.1    GDIP01109073    JAL94641.1    GDIP01060827    JAM42888.1    GDIP01155164    JAJ68238.1    GDIQ01213232    JAK38493.1    GDIQ01140109    JAL11617.1    GDIP01127315    JAL76399.1    GDIQ01107819    JAL43907.1    UYYA01004098    VDM59544.1    GDIP01190968    JAJ32434.1    GDIQ01107818    JAL43908.1    GDIQ01210932    JAK40793.1    JI164624    ADY40437.1    GDIQ01085533    JAN09204.1    DS268446    EFP02182.1    GDIQ01094523    JAL57203.1    NIPN01000136    OZG09712.1    GDIP01143565    JAJ79837.1   
Pfam
PF06202   GDE_C        + More
PF14699   hGDE_N
PF14702   hGDE_central
PF14701   hDGE_amylase
Interpro
IPR010401   AGL/Gdb1        + More
IPR029436   AGL_euk_N       
IPR017853   Glycoside_hydrolase_SF       
IPR032792   AGL_glucanoTrfase       
IPR008928   6-hairpin_glycosidase_sf       
IPR032788   AGL_central       
IPR012341   6hp_glycosidase-like_sf       
IPR032790   GDE_C       
IPR006421   Glycogen_debranch_met       
SUPFAM
SSF51445   SSF51445        + More
SSF48208   SSF48208       
Gene 3D
PDB
5D06     E-value=1.07926e-104,     Score=977

Ontologies

Topology

Length:
1782
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
30.31264
Exp number, first 60 AAs:
0.00344
Total prob of N-in:
0.00029
outside
1  -  1758
TMhelix
1759  -  1781
inside
1782  -  1782
 
 

Population Genetic Test Statistics

Pi
21.264481
Theta
20.726809
Tajima's D
-1.032945
CLR
0.952343
CSRT
0.133643317834108
Interpretation
Uncertain
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