Gene

KWMTBOMO13444

Annotation

ORF_B_(bases_1850-5560)_first_start_codon_at_2306_[Autographa_californica_nucleopolyhedrovirus]

Location

Bomo_Chr22(+):17283602-17288748      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.716

CDS

ATGGCCGTAGACCCGGACCAAATCTACAAGGCCCTTCGCCCAGTGCCAGAGTTCGACGGCAATCCGAACATACTGACTAGGTTTATCAGAATTTGTGACCAAATCGTCACACAGTATATAAGAACGGATCCTGGCAACGAATTAAATAACCTCAGCCTAATAAACGGTATATTAAATAAAATAACTGGTCCTGCCGCCAGGACCATAAATTCAAATGGCATACCAGAGAACTGGTTAGGTATCCGTACTGCCCTCATTAATAATTTTTCAGACCAAAGAGATGAGACCGCTTTATACAATGACCTCTCCTTACTAACACAGGGAAACAGTAGCCCCCAGGAGTTTTACGACAAATGCCAGACCCTATTCAGCACTCTCATGACATACGTAACTTTACACGAAAGTATTGCCACAACCATCGAGGCAAAACGCGACCTGTATAAAAAGCTAACAATGCAAGCATTTGTTCGAGGCCTCAAGGAACCCTTGGGATCTCGCATACGCTGCATGAGACCGACCTCCATTGAAAAGGCTCTGGAATTTGTACAGGAAGAACTTAACATAATGTATCTACAACAGCGAAACGGGTTCACCTCTGAACGGCGCAACCTTATTCAGCCTACACCGACACCACCTGTAAAAATACCACCTATGTTTCCGGTAGCAATGCCGAAACCGCTTTCATTCGGACCGAACCCAGGACCGAGCTGGGAGCGACAGCCACCACCAGGACCTAACAACCACTGGAAACCTGCTTTCAAATTTAACGCCCCTCAGCGCATGCCTAACATGCCATCACGCACGCAGCAAATGTTCGCATCGCACCCACCAAACTACAACCCCCGTAGCAACGTATTTAGGCTACCTCAGCGGAACCAGGGACCGAAACCTATGAGTGGTATTAGTCACTACGTGGCAAAACAACTTCCACTCACAGGTCATGATTGGAGTAACCCTAAAGCGGTGGAGAAATACTACTCAAATATACCTCTTAAATATGACCCCTTCGAAGTAACGAACGTCCACGCTACAACTAGGAACGACTTCTCTATCACTATACCAGCTTTTTCAGAACTTAACGACGCGGGACCTATTAAACTGTTTGTCTACGATTTCCACAAATTTTTTGACGGACTTATTGGTTTAGACTTGCTTACCAAATGGAAATCTAGAATCGACCTTAAAGACAACCTACTGATTACAGACAATTCTACCAACCCTATTGAAATGTTCAATTCTCGCAACGTTAACCTGTACGAAGACATCGTACCGGCTAACTCTAGTAAACTAGTTAGAGTACCAATAAATTCATCTGACGGCGAAGTCTATATCCCGCAGCAATATCTGAACAACTGTGTGGTGAACGAATGCATCACGACAGTCGTTAAAAACCGTGGTATAATTGAAGTCGAAAACACATCGCATAACGACATAATATTTTCAATGGACCGCCCCATAGAAGCGTTAACGTTTAATATCGAGTGCAGCCGTACCGAACAAAGTCGTAGTCGCGTTGATCAGGTCTTATCGCGATTACGTACCGATCACCTTAATGAGGAGGAAAAAATGAATTTAATTAACCTCTGCTCGCAGTACGCTGACGTATTCTATCTTGAGGGTGAACCGCTCACCTTTACTAATAAAATAAAACACCACATTAGGACGACCGATGAAATTCCGATCTATACAAAAAGCTATCGCTATCCTTTTGTCCACCGGGAGGAGGTTAGAGATCAAATTTCTAAGATGCTGCAACAAAATATAATAAGACCCTCTGACTCAGCATGGAGCTCGCCTATCTGGGTCGTGCCTAAAAAGGCAGATGCATCTGGAAAACAAAAATGGAGATTAGTAGTAGACTTCCGTAAGCTAAATGAAAAAACTATCGACGACAAATATCCGATACCAAACATATCCGACGTTCTAGATAAATTAGGTAAGTGCCAGTATTTCACAACCCTGGACCTGGCAAGCGGATTCTACCAAGTGGAAACGAACCCTGAAGACATCCCAAAAACAGCGTTCAATGTAGAGCACGGACATTTTGAATTTTTAAGAATGCCGATGGGATTAAAAAATTCTCCGGCTACATTTCAAAAAGTTATGGATAACGTCTTGAAAGGTCTTCAAAACGTTATATGCCTAGTATATCTTGATTACATTATCGTTTTTAGCACATCTTTACAAGAACATCTTGTTAACCTCGAAAAAGTGTTTCAGAGACTTCGTGAGTCCAACTTCAAAATACAGATGGACAAATCAGAATTTTTAAAATTAGAAACAGCCTACTTAGGTCATATAATTAGCAACGAAGGAATTAAACCTAATCCCGACAAAATTGCCACCATACAAAAGTACCCGATACCAAAAACCACAAAACAAATTAAGCAATTCCTCGGACTTATAGGATATTATCGAAAATTTATACCCGACTTTGCTAAAATAACGAAACCATTCACACAGTGCTTAAAGAAAGGACGGGCTATAACCCTTAGTAAAGACTACATAGACTGTTACGAAAAGTGTAAGCAACTTTTGACTAACGACCCAATATTACAGTACCCTGATTTTACAAAGGAATTTATTTTAACAACTGACGCATCAAATGTGGCTTTAGGAGCTATATTGTCACAAGGCCCCATAGGCTCCGATAGACCTGTATGTTACGCCTCACGTACCTTAAATGAAAGCGAGATGAATTACAGTACAATCGAGAAAGAATTACTAGCAATCGTGTGGGCCACCAAATACTTTAGACCATATTTATTTGGCCGAAAATTTAAAATAATAACGGACCATAAACCACTACAGTGGATTATGAACCTTAAAGAGCCTAACTCACGTTTGACCAGGTGGCGACTTAAACTTAGCGAGTATGACTACACCATCGTCTATAAAAAGGGCAAAATTAATACGAACGCCGACGCCCTCTCGCGAGTAGAGATACATAACGAAGATGTAAGTTCCATGATAGCGAACCCTTCAGAAAAACCACCCTCAGTCACGGGTTCAACCACCGCCACAGCTCATACCAGTAATGAAAACCCCATATTAGAGGTCCCCATAACCGACGAACCACTGAATAAATTCTATAAGCAAATATGCATAACAGTGGTCGGAGACATCAAAAAACGACCCGTTATCAGTAAGCCATTTGAAACGCACACTCGCATATCTATACAAGTTTCCCAATCAAACTTAAGAGAAGACGTCATAAACGCCATTAAAGAATTCGTTAATCCTAAAGTAAAAACTGGCCTCCTTATTAATCCAACATTAAGCATGTACGACATTATACCCATAATTCAAGACACGTTCAGAAATTCGGCAATGAACCTCCTACTCACAAAGGTCGAATTAGAAAATGTGAAGGAGTACCTTCGGCAACAAGAAATAATAAGCCACTATCACGATGGAAAAACTAACCACCGCGGAATAAACGAGTGTTATTTAGCTCTTTCGCGAAAATATTACTGGCCGAAAATGAAAGATCAAATTACAAAATTCATAAACGAATGTACCATATGCGGACAAGCTAAATACGATCGCGCACCCATTAAACAGCAGTTTAGCATAGTACCACCCCCGAAGAAACCCTTCGAAATAGTTCATATGGACTTGTTCACCGCCCAATCCGAAAAATACCTGACATTTATTGACGTATTCTCTAAGTACGGACAGGCTTACCTGTTGAGAGACGGCACAGCAATTAGCGTATTACAGGGTCTATTGCAGTTCTGCACGCATCATGGTCTACCTTTAACGATAGTAACTGATAATGGTACAGAATTCACAAACCAATTGTTTTCCGAATTCATACGACTTCACAAAATAAATCATCATAAAACCCTAGCACATACACCTAATGACAATGGCAATGTAGAGAGATTCCATTCAACCTTGCTAGAACACCTTCGCATACTTCGCTTACAACATAAAAATGAACCTGTAATAAACTTAATGCCTTATGCAATATTAGCTTACAACAGTTCAGTTCACAGTTTCACCAAATGTCGCCCTTTTGACATCATAACGGGACACTTTGACCCTAGAGACCCTCTCGACATTGACATAACAGCCCATTTACTGCAACAGTACATGGAATCACATAAAGCTCAAATGACTACAGTTTATGAACTCATAAATGAAACCTCACTTGCTAACCGTACATCGCTCATTGAAAATAGAAATAAGAACCGCGAACCAGAAGCGACGTACCAACCTAACCAACAAGTTTTCATTAAAAACCCGATAGCAGCCCGACAAAAAACAGCCCCGAGGTACACTCAAGATAGAGTGCTAGCAGACTTACCAATTCATATCTACACATCGAAAAAACGAGGCCCTATTGCTAAATCCCGACTTAAACGTGCACATAAAGACTTCCGATTGTTACAGGATTCTACTGAACCTCCTGACCCGACATCTGACGACCGCACACGAGATAAAACTTGA

Protein

MAVDPDQIYKALRPVPEFDGNPNILTRFIRICDQIVTQYIRTDPGNELNNLSLINGILNKITGPAARTINSNGIPENWLGIRTALINNFSDQRDETALYNDLSLLTQGNSSPQEFYDKCQTLFSTLMTYVTLHESIATTIEAKRDLYKKLTMQAFVRGLKEPLGSRIRCMRPTSIEKALEFVQEELNIMYLQQRNGFTSERRNLIQPTPTPPVKIPPMFPVAMPKPLSFGPNPGPSWERQPPPGPNNHWKPAFKFNAPQRMPNMPSRTQQMFASHPPNYNPRSNVFRLPQRNQGPKPMSGISHYVAKQLPLTGHDWSNPKAVEKYYSNIPLKYDPFEVTNVHATTRNDFSITIPAFSELNDAGPIKLFVYDFHKFFDGLIGLDLLTKWKSRIDLKDNLLITDNSTNPIEMFNSRNVNLYEDIVPANSSKLVRVPINSSDGEVYIPQQYLNNCVVNECITTVVKNRGIIEVENTSHNDIIFSMDRPIEALTFNIECSRTEQSRSRVDQVLSRLRTDHLNEEEKMNLINLCSQYADVFYLEGEPLTFTNKIKHHIRTTDEIPIYTKSYRYPFVHREEVRDQISKMLQQNIIRPSDSAWSSPIWVVPKKADASGKQKWRLVVDFRKLNEKTIDDKYPIPNISDVLDKLGKCQYFTTLDLASGFYQVETNPEDIPKTAFNVEHGHFEFLRMPMGLKNSPATFQKVMDNVLKGLQNVICLVYLDYIIVFSTSLQEHLVNLEKVFQRLRESNFKIQMDKSEFLKLETAYLGHIISNEGIKPNPDKIATIQKYPIPKTTKQIKQFLGLIGYYRKFIPDFAKITKPFTQCLKKGRAITLSKDYIDCYEKCKQLLTNDPILQYPDFTKEFILTTDASNVALGAILSQGPIGSDRPVCYASRTLNESEMNYSTIEKELLAIVWATKYFRPYLFGRKFKIITDHKPLQWIMNLKEPNSRLTRWRLKLSEYDYTIVYKKGKINTNADALSRVEIHNEDVSSMIANPSEKPPSVTGSTTATAHTSNENPILEVPITDEPLNKFYKQICITVVGDIKKRPVISKPFETHTRISIQVSQSNLREDVINAIKEFVNPKVKTGLLINPTLSMYDIIPIIQDTFRNSAMNLLLTKVELENVKEYLRQQEIISHYHDGKTNHRGINECYLALSRKYYWPKMKDQITKFINECTICGQAKYDRAPIKQQFSIVPPPKKPFEIVHMDLFTAQSEKYLTFIDVFSKYGQAYLLRDGTAISVLQGLLQFCTHHGLPLTIVTDNGTEFTNQLFSEFIRLHKINHHKTLAHTPNDNGNVERFHSTLLEHLRILRLQHKNEPVINLMPYAILAYNSSVHSFTKCRPFDIITGHFDPRDPLDIDITAHLLQQYMESHKAQMTTVYELINETSLANRTSLIENRNKNREPEATYQPNQQVFIKNPIAARQKTAPRYTQDRVLADLPIHIYTSKKRGPIAKSRLKRAHKDFRLLQDSTEPPDPTSDDRTRDKT

Uniprot

Q65353   A0A1B6DI21   A0A146L836   A0A146KMA2   A0A0A9YJ44   V5GQE1   + More
A0A0K8S7R8   A0A0A9YU38   A0A0A9XBE2   Q5BN17   O46115   A0A1W7R6J9   D7GXP0   A0A1W7R6M6   A0A2S2NNZ3   A0A2S2NFT1   X1WX89   X1X3W2   A0A1W7R6H9   A0A0K8TRU1   X1WLD0   X1WUN1   A0A2S2QPU6  

Pubmed

1692964    26823975    25401762    12537573    9405380    18362917    + More
19820115    26369729   

EMBL

M32662    AAA92249.1    GEDC01017847    GEDC01011974    JAS19451.1    JAS25324.1    + More
GDHC01015253    JAQ03376.1    GDHC01021754    JAP96874.1    GBHO01012506    JAG31098.1    GALX01004629    JAB63837.1    GBRD01016627    JAG49199.1    GBHO01007885    JAG35719.1    GBHO01026285    JAG17319.1    AY928610    AAX28844.1    AJ000387    CAA04050.1    GEHC01000905    JAV46740.1    GG694348    EFA13518.1    GEHC01000875    JAV46770.1    GGMR01006290    MBY18909.1    GGMR01003444    MBY16063.1    ABLF02035279    ABLF02041373    ABLF02041371    GEHC01000866    JAV46779.1    GDAI01000740    JAI16863.1    ABLF02041728    ABLF02025379    ABLF02025385    ABLF02041365    ABLF02057103    GGMS01010347    MBY79550.1   

Proteomes

UP000007266    UP000007819   

PRIDE

Q5BN17    O46115   

Pfam

PF00078   RVT_1        + More
PF17917   RT_RNaseH
PF00665   rve
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF02902   Peptidase_C48
PF12259   Baculo_F
PF01661   Macro

Interpro

IPR012337   RNaseH-like_sf        + More
IPR001584   Integrase_cat-core       
IPR000477   RT_dom       
IPR041373   RT_RNaseH       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR021109   Peptidase_aspartic_dom_sf       
IPR003653   Peptidase_C48_C       
IPR001969   Aspartic_peptidase_AS       
IPR041577   RT_RNaseH_2       
IPR038765   Papain-like_cys_pep_sf       
IPR002589   Macro_dom       
IPR022048   Envelope_fusion-like       
IPR036875   Znf_CCHC_sf       
IPR001995   Peptidase_A2_cat       

SUPFAM

SSF53098   SSF53098        + More
SSF54001   SSF54001       
SSF50630   SSF50630       
SSF57756   SSF57756       

Gene 3D

3.30.420.10     2.40.70.10    

ProteinModelPortal

Q65353   A0A1B6DI21   A0A146L836   A0A146KMA2   A0A0A9YJ44   V5GQE1   + More
A0A0K8S7R8   A0A0A9YU38   A0A0A9XBE2   Q5BN17   O46115   A0A1W7R6J9   D7GXP0   A0A1W7R6M6   A0A2S2NNZ3   A0A2S2NFT1   X1WX89   X1X3W2   A0A1W7R6H9   A0A0K8TRU1   X1WLD0   X1WUN1   A0A2S2QPU6  

PDB

4OL8     E-value=1.15839e-70,     Score=683

KEGG

105842348    no KO assigned | (RefSeq) uncharacterized LOC105842348

GO

GO:0015074   GO:0003676   GO:0008234   GO:0004190   GO:0003964   GO:0005634   GO:0016021   GO:0008270   GO:0000166   GO:0004812   GO:0006418   GO:0005737   GO:0048869   GO:0016491   GO:0015930  

Length:

1484

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02601

Exp number, first 60 AAs:

0.00073

Total prob of N-in:

0.00064

outside

1  -  1484

 

 

Pi

19.847954

Theta

21.146973

Tajima's D

-1.33108

CLR

18.000866

CSRT

0.0818959052047398

Interpretation

Uncertain