Silkworm Genome Informatics Database

Gene

KWMTBOMO13441 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010862

Annotation

PREDICTED:_probable_RNA-binding_protein_46_[Bombyx_mori]

Location

Bomo_Chr22(+):17256912-17259990 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.051 Mitochondrial Reliability : 1.71 Nuclear Reliability : 1.238

CDS

ATGGAACCTACGAAAAACTTGACACGGAAACTCTTGGACCTGATGCAGGAGACAGGGTATCCACTGGTGCAGCACAATGGGCAAAGAAGGTACGGGCCACCTCCAGACTGGGTGGGACCACCGCCTCAAAAAGGCTGTGAAGTATTCATAGGGAATTTACCTAGAGAGATCTTCGAGGATGAACTGGTCCCGATATTCGCCACAGTCGGTAAAATCTACGAGATGCGCCTGATGATGGATTTTTCGGGCTCGAACCGAGGTTACGCATTTGTAACTTATACCTCTCGATCGGAAGCCTACCGCGCTACAAGGGAGTTAAATCACCATGAAATTCGACCAGGGAAACACATTGGCGTCGTGAAATCTGTAGACAACTGTCGGCTCTTTGTGGGGAACATACCGAAAACCAAGTCTAAAGAGGAAGTCTATGAAGAGCTGTCTAACCGCGTTACGGGCATTGTCGATGTGATTTTGTACAAAAACGCCTACGACAGGAAACTGAACAGAGGATTTGCTTTTGTGGAGTTCACATCGCACCGCGCGGCTGCTATGGCGCGGCGCGCGCTCATCCCGGGTTGCGTTAAGCTCTGGAATGAAGATGTGATGGTGGACTGGGCTGAACCGGAACCAGACATTGACGATGAACAGATGAAAACTGTTAAAGTATTGTACGTACGTAATTTTCTTATAAAAACGACTCCGGACGCGATTCAGTCAGTGTTTGAAGCTGCCATTAACGCAAAAATACAACGGATCAAAAAAATTTATGACTACGCGTTCATTCATTTCTATGAGCGTGAGCATGCAGAACTAGCAATGAGGCTGCTTCAGAATTCTGAAATTGATGGTAGCAATATCGAAATAAGATGGGCGAAACCTGTAGTGCGAGAGCTCTACCGTATTCAAAAATTGAACAAAGGCAATGCGAAATTCAATAATACTTTGGACTTCTCCCAAACGCTCTTACTTTATAAACAGCATTTGGAGAAGAAAGAATATGCGAAGTCATTGAAAGAAGACGAAGGGATTGGCTCTGCGTGTGCAGGATCAGTCTGTGGCTCTCCAACTGAAGTAAAGCCTCCAGAGTACAAAAGGATGGACACTCGGTATCCACTAGCTCCTGCCAAGCTAGATTCTATGTGCAAGAGATACATGTGGGCCCCGCCATCTTATGAATACCAAAAGCACATTGATGTAGGGGGTACTGAAGTTTGGATTGCGAAGGTAGAATTGCCATATGTGGGACTGCCGTTGCTGACAGTGCCACGCTGTGTTGGACCACTGGTGACGAGAGCTTGTGTCTCTATGCAGCAAGCACAGATAGAGGCTGCTGAAGCTGCATTACATACAATTAAGGTTCTCCGAGCTGACGTCATTCAGCGCTCTACCATGACTGCAGTGCAACATGTTTATCCATCCATGTTGCCTCAAATGCCAAACTGTGTGCCGTACCCTGCTGTCTACCCAAGTCAGCCTCCAACGATTCCAGTAACACTCCCTACCCTCTGGCGAGCTGTTTGA

Protein

MEPTKNLTRKLLDLMQETGYPLVQHNGQRRYGPPPDWVGPPPQKGCEVFIGNLPREIFEDELVPIFATVGKIYEMRLMMDFSGSNRGYAFVTYTSRSEAYRATRELNHHEIRPGKHIGVVKSVDNCRLFVGNIPKTKSKEEVYEELSNRVTGIVDVILYKNAYDRKLNRGFAFVEFTSHRAAAMARRALIPGCVKLWNEDVMVDWAEPEPDIDDEQMKTVKVLYVRNFLIKTTPDAIQSVFEAAINAKIQRIKKIYDYAFIHFYEREHAELAMRLLQNSEIDGSNIEIRWAKPVVRELYRIQKLNKGNAKFNNTLDFSQTLLLYKQHLEKKEYAKSLKEDEGIGSACAGSVCGSPTEVKPPEYKRMDTRYPLAPAKLDSMCKRYMWAPPSYEYQKHIDVGGTEVWIAKVELPYVGLPLLTVPRCVGPLVTRACVSMQQAQIEAAEAALHTIKVLRADVIQRSTMTAVQHVYPSMLPQMPNCVPYPAVYPSQPPTIPVTLPTLWRAV

Uniprot

H9JMV9 A0A2H1V7Y9 A0A2A4JHP7 A0A2W1BQA1 A0A194R0C0 A0A212EIQ6 + More
A0A194PXJ4 A0A0L7KUW8

Pubmed

19121390 28756777 26354079 22118469 26227816

EMBL

BABH01029077 ODYU01001137 SOQ36927.1 NWSH01001352 PCG71577.1 KZ149981 + More
PZC75804.1 KQ460883 KPJ11238.1 AGBW02014600 OWR41358.1 KQ459586 KPI98047.1 JTDY01005408 KOB67043.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000007151 UP000053268 UP000037510 + More

PRIDE

H9JMV9

Pfam

PF00076   RRM_1        + More
PF00152   tRNA-synt_2
PF01336   tRNA_anti-codon

Interpro

IPR035979   RBD_domain_sf        + More
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom
IPR006535   HnRNP_R/Q_splicing_fac
IPR034442   RBM47
IPR004364   aa-tRNA-synt_II
IPR004365   NA-bd_OB_tRNA
IPR012340   NA-bd_OB-fold
IPR004524   Asp-tRNA-ligase_1
IPR002312   Asp/Asn-tRNA-synth_IIb
IPR006195   aa-tRNA-synth_II

SUPFAM

SSF54928 SSF54928 + More
SSF50249 SSF50249

Gene 3D

3.30.70.330

ProteinModelPortal

H9JMV9 A0A2H1V7Y9 A0A2A4JHP7 A0A2W1BQA1 A0A194R0C0 A0A212EIQ6 + More
A0A194PXJ4 A0A0L7KUW8

PDB

2DIS E-value=8.61321e-31, Score=335

KEGG

101735779 no KO assigned | (RefSeq) probable RNA-binding protein 46

GO

GO:0003723 GO:0006418 GO:0005524 GO:0004812 GO:0000166 GO:0003676 GO:0016021 GO:0004930 GO:0005525 GO:0031386 GO:0048869 GO:0016491 GO:0015930

PANTHER

PTHR21245:SF6 PTHR22594:SF5

Length:

506

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01143

Exp number, first 60 AAs:

4e-05

Total prob of N-in:

0.00787

outside

1 - 506

Pi

4.720941

Theta

5.389487

Tajima's D

-0.538571

CLR

2.155962

CSRT

0.24198790060497

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics