SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13423
Pre Gene Modal
BGIBMGA010899
Annotation
cuticular_protein_RR-2_motif_78_precursor_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.475 Nuclear   Reliability : 2.024
 

Sequence

CDS
ATGAAATATTCAAAGATCTATATCATTATTTCATTTCATCATCGTCATCATCATTTCCAGCCCCATCCCTCATACCAGTTCGGCTTCGACGTGAACGATGACCAGTACACTAACTACCAGAACAGGAAGGAGCAGCGCGACGGTGACGTCATCAAGGGCTCGTACTCCGTAGTAGACAGTGACGGGTTCATCAGAACTGTCACTTACACTGCTGACCCTAAAGAGGGCTTCAAAGCCGAGGTACAAAGGCAGCCAACCGACATCGTAGTAAAGATCCCTACGCCCAAGCCTCAAATCGCTCAGCAGCCGCAGCTCGCACACCAACCTCAAATATCTCATCAGCCTCAAATTGGACACCAACAACAAATCGGTCACCAGTCTAGGCCGCAACAACCTCCCCCCCAGTACTATCATTATGAACAATAA
Protein
MKYSKIYIIISFHHRHHHFQPHPSYQFGFDVNDDQYTNYQNRKEQRDGDVIKGSYSVVDSDGFIRTVTYTADPKEGFKAEVQRQPTDIVVKIPTPKPQIAQQPQLAHQPQISHQPQIGHQQQIGHQSRPQQPPPQYYHYEQ

Summary

Pfam
PF00379   Chitin_bind_4
Interpro
IPR031311   CHIT_BIND_RR_consensus        + More
IPR000618   Insect_cuticle       
ProteinModelPortal

Ontologies

Topology

Length:
141
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0002
Exp number, first 60 AAs:
0.00011
Total prob of N-in:
0.34359
outside
1  -  141
 
 

Population Genetic Test Statistics

Pi
11.635533
Theta
17.683941
Tajima's D
-1.272205
CLR
15.481577
CSRT
0.0919954002299885
Interpretation
Uncertain
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