SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13414
Annotation
PREDICTED:_antigen_43-like_isoform_X5_[Salmo_salar]
Location
Bomo_Chr22(-):16500194-16502482      View in EpiBrowser
Location in the cell
Extracellular   Reliability : 1.885 Nuclear   Reliability : 1.638
 

Sequence

CDS
ATGCTGCAAAGTCGCTCTGCAACGTCATGCTGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTATGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCGCTATGCAACGTCATGCTGCAAAGTCGCTCTGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCGCTATGCAACGTCATGCTGCAAAGTCGCTCTGCAACGTCATGCTGCAACGTCATTCTGCAACGTCGCTATGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCGCTATGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATTCTGCAATGTCATTCTGCAACGTCGCTCTGCAACGTCGCTATGCAACGTCATGCTGCAAAGTCGCTCTGCAACGTCGCTATGCAACGTCATGCTGCAAAGTCGCTCTGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCGCTATGCAACGTCATGCTGCAAAGTCGCTCTGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCGCTATGCAACGTCATGCTGCAAAGTCGCTCTGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCATTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATTCTGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCATTCTGCAACGTCATTCTGCAACGTCATGCTGCAACGTCGCTATGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCGCTATGCAACGTCATGCTGCAAAGTCGCTCTGCAACGTCATTCTGCAACGTCATGCTGCAACGTCGCTATGCAACGTCATTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATGCTGCATCGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCGCTATGCAACGTCATGCTGCAAAGTCGCTCTGCAACGTCATTCTGCAACGTCATGCTGCAACGTCGCTATGCAACGTCGCTCTGCAACGTCGCTATGCAACGTCATGCTGCAAAGTCGCTCTGCAACGTCGCTATGCAACGTCATGCTGCAACGTCATTCTGCAAAGTCGCTATGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATGCTTCAACGTCCCTCAGCAACGTCATGCTGCAAAGTCGCTCTGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCATTCTGCAACGTCATGCTGCAACGTCGCTATGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATGATGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTTCAACGTCATGCTGCAACGTCATTCTGCAACGTCACGCTGCAACGTCGCTATGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCATTCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATGCTTCAACGTCCCTCAGCAACGTCATGCTGCAAAGTGTCTAA
Protein
MLQSRSATSCCNVILQRRSATSCCNVAMQRHSATSLCNVMLQRRSATSFCNVALQRRYATSCCKVALQRHSATSLCNVILQRRSATSLCNVMLQSRSATSCCNVILQRRYATSFCNVALQRRYATSFCNVALQRHSATSLCNVILQCHSATSLCNVAMQRHAAKSLCNVAMQRHAAKSLCNVILQRRSATSCCNVALQRHSATSLCNVAMQRHAAKSLCNVILQRRSATSFCNVALQRRYATSCCKVALQRHSATSLCNVMLQRHSATSLCNVMLQRRSATSLCNVMLQRHSATSCCNVALQRHSATSFCNVALQRHAATSFCNVILQRHAATSLCNVILQRRSATSCCNVALQRHAATSLCNVMLQRRSATSCCNVALQRHAATSLCNVAMQRHAAKSLCNVILQRHAATSLCNVILQRHAATSLCNVMLQRRSATSCCNVALQRHAASSLCNVMLQRRSATSFCNVALQRRYATSCCKVALQRHSATSCCNVAMQRRSATSLCNVMLQSRSATSLCNVMLQRHSAKSLCNVILQRRSATSCCNVILQRRSATSCCNVALQRHASTSLSNVMLQSRSATSFCNVALQRHAATSLCNVALQRHAATSFCNVMLQRRYATSFCNVALQRHDATSLCNVMLQRRSSTSCCNVILQRHAATSLCNVILQRRSATSCCNVILQRRSATSCCNVALQRHASTSLSNVMLQSV

Summary

Uniprot
A0A1S3MK91   A0A1S3MJI7   A0A1S3MJ53   A0A1S3MJ92   A0A1S3MK87   A0A1S3MJ86   + More
A0A0E3S0X9   T2MCP8   A0A210QVX4   A0A210QIC7   A0A3P9LI85   A0A1Q9ESK4   A0A2I0K3D9   A0A210QHC0   A0A210PZS3   A0A3P9HFZ5   A0A3P9HH40   A0A1S3LVP0   A0A3P9J1V7   A0A3P9HHR7   A9GHN5   A0A3M0K7H6   W4XWC1   A0A3B1JB79   A0A3P9HH44   A0A3P9HGS6   A0A1R1YDT3   A0A1R1YP04   A0A3P9HGU7  
Pubmed
24065732    28812685    17554307    17965706    25329095   
EMBL
CP009515    AKB73666.1    HAAD01003480    CDG69712.1    NEDP02001613    OWF52891.1    + More
NEDP02003577    OWF48351.1    LSRX01000079    OLQ10409.1    PGOL01000959    PKI62633.1    NEDP02003643    OWF48160.1    NEDP02005326    OWF41976.1    AM746676    CAN99522.1    QRBI01000116    RMC09052.1    AAGJ04101532    LSSM01001710    OMJ25053.1    LSSM01000546    OMJ28565.1   
Proteomes
UP000087266    UP000033072    UP000242188    UP000265180    UP000233551    UP000265200    + More
UP000002139    UP000269221    UP000007110    UP000018467    UP000187429   
Pfam
PF13306   LRR_5        + More
PF07645   EGF_CA
Interpro
IPR011004   Trimer_LpxA-like_sf        + More
IPR026906   LRR_5       
IPR033201   HRNR       
IPR037727   KIAA0754       
IPR001762   Disintegrin_dom       
IPR036436   Disintegrin_dom_sf       
IPR009030   Growth_fac_rcpt_cys_sf       
IPR001881   EGF-like_Ca-bd_dom       
IPR000742   EGF-like_dom       
IPR018097   EGF_Ca-bd_CS       
SUPFAM
SSF51161   SSF51161        + More
SSF57552   SSF57552       
SSF57184   SSF57184       
Gene 3D
4.10.70.10    
ProteinModelPortal
A0A1S3MK91   A0A1S3MJI7   A0A1S3MJ53   A0A1S3MJ92   A0A1S3MK87   A0A1S3MJ86   + More
A0A0E3S0X9   T2MCP8   A0A210QVX4   A0A210QIC7   A0A3P9LI85   A0A1Q9ESK4   A0A2I0K3D9   A0A210QHC0   A0A210PZS3   A0A3P9HFZ5   A0A3P9HH40   A0A1S3LVP0   A0A3P9J1V7   A0A3P9HHR7   A9GHN5   A0A3M0K7H6   W4XWC1   A0A3B1JB79   A0A3P9HH44   A0A3P9HGS6   A0A1R1YDT3   A0A1R1YP04   A0A3P9HGU7  

Ontologies

KEGG
105841723    no KO assigned | (RefSeq) uncharacterized LOC105841723
GO
GO:0016021   GO:0001533   GO:0005509  
PANTHER
PTHR22571:SF25   PTHR35248  

Topology

Length:
707
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00241
Exp number, first 60 AAs:
0.00023
Total prob of N-in:
0.00042
outside
1  -  707
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
377.539373
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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