Gene

KWMTBOMO13382

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr22(-):15826612-15828728      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.778 Nuclear   Reliability : 1.447

CDS

ATGTTTGAAGAGCAACAACTTAAGAAAATTGCAAATAGTTACTCAAAGCAGGAATCCAGGATTTTCTACAAGCAAGTGAATAGCGGAAAGAAGGAATTTAAACCAAGAACCTCAGCCTGTAGAAATAAAGATGGCCAACTGCTTAATGACAGAACAGAAGTCATTAAAAGGTGGGCAGAACACTTCCAAGAGCTACTAAACAAACCATCAGTTGCTACTCATATCGATGAAGTCGAAGCTCCACTTAATCATCAGTGGCTAGAAGTGTCCCAACCGTCTCTGGAAGACACGAGAGCTGCCAGCCAAAAACTCAAAAACAATAAAGCTCCAGGAAACGACAACATCCAGAGTGAACTGCTGAAATACGCTGGGTCCCAGTTTGAAGAGGAATTCCATAAACTAGTACTGCAGATATGGAATTCTGAAGTTATGCCTGAGGAATGGAACACAGCGGTTATTTGTCCTCTCCACAAGAAGGGCGATGTTCTCGACTGTCAGAACTATCGAGGCATTTCACTCCTCAATACAGCATATAAGATATTTGCGAACGTTCTCTTTGGCAAATTAAAACCTTTCGTGGAGCGTAGACTAGGAGAATATCAGTGTGGTTTCCGACCTGGCAGATCAACCATCGACCAAATCTTCTCCCTACGACAAATACTTGAAAAAACTCTTGAATTTAATGCTGACACGTATCACCTTTTTATTGATTTTAAAGCTGCCTACGACAACATAAGCCGTGATTTCCTATACCAGGCTATGCATGAGATTGGCGTACCACCGAAGCTTATATCTTTAACAAGGATGACACTGGTTGCATCGCAAAGCATTGTTAAGATCCAAACAGACCTATCGGATCCTTTTAGAACCCATGATGGACTAAGGCAGGGTGATGCCCTCTCCTGCCTTCTTTTCAATGTTGCACTCGATAAGTGTATCCGTGACTCAGCAATAGAGACGACGGGCAATATATATTACAAATCCGCTCAAGTACTGGGATATGCGGATGATATTGACGTCATTGGCAGATCAGCTCTCGCAGTAGAAAGTGCGTACCTTGCTCTCGAGGCCTCGTCTCTCGAAGCCGGTCTCCAAGTAAACGCAGACAAAACTAAATTCCTGAGGGTGTCGAGGGACTTACGTGAGGACACAGCGCATAAAAATATTGGCCAGCATACTTTTGGATCTGTGAATGAATTTGTATATCTTGGTTCTCTGATAACGAATAATAATAATATAACAGCAGAAATAGTTAAGAGAATACTGTCGGCGAATAAATGCTACTTCGGCCTGCTTAAATATTTCTGTTCCAAAATTCTGTCACGAAATATCAAAATTCTTTTATACAAGACCCTACTGAGACCCATTCTTATTTATGGCTCAGAGACATGGGTACTCAGCAAAAAAGATGAGAACCGTCTACTTGTGTTCGAGCGTAAGATTCTAAGACGGATATTCGGTGCTGTGCGGGAAAACCAGATATGGAGGACGCGCTATAACCACGAGTTGTATGATGTTTACAAAGATCCTAACATCATAACAACTATAAAGATTGGACGCCTACGATGGGCAGGACATGTGGTTCGAATGGAGAGTACCAGAATGCCAAGACAATTGCTCTATGGCAAACCAGAGGGCCGCAGAAGTCGTGGCAGACCCAAACTTCGATGGTTGGATGGCGTGGAGCGCGACCTCAAAAATATCGGCGTCAAGAACTGGAAGGAGAAAGCCCTGAACAGAGCAGTCTGGAGAGACATACTGGACCAGGCTAAGGCCCACCCTGGGCTGTAA

Protein

MFEEQQLKKIANSYSKQESRIFYKQVNSGKKEFKPRTSACRNKDGQLLNDRTEVIKRWAEHFQELLNKPSVATHIDEVEAPLNHQWLEVSQPSLEDTRAASQKLKNNKAPGNDNIQSELLKYAGSQFEEEFHKLVLQIWNSEVMPEEWNTAVICPLHKKGDVLDCQNYRGISLLNTAYKIFANVLFGKLKPFVERRLGEYQCGFRPGRSTIDQIFSLRQILEKTLEFNADTYHLFIDFKAAYDNISRDFLYQAMHEIGVPPKLISLTRMTLVASQSIVKIQTDLSDPFRTHDGLRQGDALSCLLFNVALDKCIRDSAIETTGNIYYKSAQVLGYADDIDVIGRSALAVESAYLALEASSLEAGLQVNADKTKFLRVSRDLREDTAHKNIGQHTFGSVNEFVYLGSLITNNNNITAEIVKRILSANKCYFGLLKYFCSKILSRNIKILLYKTLLRPILIYGSETWVLSKKDENRLLVFERKILRRIFGAVRENQIWRTRYNHELYDVYKDPNIITTIKIGRLRWAGHVVRMESTRMPRQLLYGKPEGRRSRGRPKLRWLDGVERDLKNIGVKNWKEKALNRAVWRDILDQAKAHPGL

Uniprot

D7F170   A0A2P8YGI5   A0A2P8ZAY7   A0A023F0H0   A0A023F0F3   A0A023EZ18   + More
A0A2P8Z0K7   A0A2L2YFD0   A0A2M4CRR0   A0A0K8SN56   A0A2M4CRT4   A0A0K8TRS6   A0A0K8TJE5   A0A2M4A3Y0   A0A2M4A3Z2   A0A2M4ACI4   A0A2M4A809   A0A2M4A2X8   A0A2M4A3H0   A0A367YPS2   A0A0U4HM41   A0A0P8Y4M6   A0A2M4A6U1   A0A0P8Y6K1   A0A0N8NZU6   A0A0P8Y5F3   A0A0P8ZWR4   A0A0P9A604   A0A1B0DRK3   A0A023EXX8   A0A0J7KMY2   A0A0V0G8V1   T1E1T8   A0A146KNZ7   A0A023F0M0   A0A3L8DEM2   A0A0A9WI21   A0A0P8Y0P3   A0A2P8YTB7   A0A0P8Y3A6   A0A0P8XIG1   A0A0P9AMX6   A0A0P9BSL5   A0A0P8Y7V9   A0A0P9AAF4   A0A0P8XDM7   A0A0P8XJ08   A0A023EZ68   A0A2P8YYC9   A0A023EWL3   A0A023EX67   A0A069DWW0   A0A2P8YFW0   A0A0Q9WVM4   A0A0N8NYW2   A0A0N8P264   A0A0R3Q7D3   A0A2S2PCU1   A0A0A9WEG0   A0A2P8XC08   A0A0V0G616   A0A0K8S3X2   A0A2P8YPE1   A0A2P8ZGH9   A0A2M4BN64   A0A2J7QCQ8   A0A2P8Z488   A0A2P8ZLT6   A0A060Q6A2   A0A2P8YLJ1   A0A2P8YWA2   A0A0B4GMM2   A0A2P8ZIH1   A0A2P8Z313   A0A2P8XT91   A0A2P8ZFZ0   A0A2S2NQ16   A0A2P8Y2S1   A0A2P8YLY7   J9KNQ8   A0A2P8XR21   J9LFP1   A0A2S2N6G4   A0A2S2PT92   A0A2S2P2F5   J9KHI9   A0A1W7R6Q7   X1X9T6   A0A2P8Z3H5   X1X8T7   A0A023EWM1   A0A2P8ZCA4   A0A2S2PIT5   J9L6X2   J9KH77   J9LBF3   A0A1B0CNV0   J9L287   A0A1Y1LRT6  

Pubmed

20470440    29403074    25474469    26561354    26369729    25527032    + More
17994087    24945155    24330624    26823975    30249741    25401762    18057021    26334808    25368161    28004739   

EMBL

FJ265555    ADI61823.1    PYGN01000613    PSN43351.1    PYGN01000119    PSN53667.1    + More
GBBI01004263    JAC14449.1    GBBI01004261    JAC14451.1    GBBI01004262    JAC14450.1    PYGN01000254    PSN50032.1    IAAA01017079    LAA06070.1    GGFL01003846    MBW68024.1    GBRD01011073    JAG54751.1    GGFL01003845    MBW68023.1    GDAI01000742    JAI16861.1    GBRD01000202    JAG65619.1    GGFK01002192    MBW35513.1    GGFK01002196    MBW35517.1    GGFK01005184    MBW38505.1    GGFK01003613    MBW36934.1    GGFK01001798    MBW35119.1    GGFK01001949    MBW35270.1    QOUI01000020    RCK67885.1    KU311054    ALX81665.1    CH902619    KPU76535.1    GGFK01003183    MBW36504.1    CH902653    KPU74858.1    CH902657    KPU75308.1    CH904714    KPU81814.1    CH902626    KPU79149.1    CH902621    KPU81727.1    AJVK01001578    GAPW01000199    JAC13399.1    LBMM01005351    KMQ91586.1    GECL01001585    JAP04539.1    GALA01001775    JAA93077.1    GDHC01021627    JAP97001.1    GBBI01004198    JAC14514.1    QOIP01000009    RLU18885.1    GBHO01037471    GBRD01009355    GBRD01009354    GDHC01014856    GDHC01007898    JAG06133.1    JAG56469.1    JAQ03773.1    JAQ10731.1    CH902628    KPU75346.1    PYGN01000372    PSN47498.1    CH902714    KPU81861.1    CH902666    KPU74610.1    CH902618    KPU79125.1    CH902633    KPU74667.1    CH902630    KPU77522.1    CH902622    KPU75266.1    KPU77326.1    CH902623    KPU72899.1    CH902627    KPU74872.1    GBBI01004199    JAC14513.1    PYGN01000287    PSN49259.1    GAPW01000120    JAC13478.1    GAPW01000107    JAC13491.1    GBGD01000331    JAC88558.1    PYGN01000629    PSN43121.1    CH963259    KRF97428.1    CH902961    KPU72636.1    CH905131    KPU81852.1    UZAG01001147    VDO10529.1    GGMR01014652    MBY27271.1    GBHO01037470    JAG06134.1    PYGN01003402    PSN29545.1    GECL01002632    JAP03492.1    GBRD01017846    JAG47981.1    PYGN01000451    PSN46127.1    PYGN01000064    PSN55609.1    GGFJ01005240    MBW54381.1    NEVH01016288    PNF26362.1    PYGN01000203    PSN51319.1    PYGN01000020    PSN57453.1    HE799691    CCH14900.1    PYGN01000510    PSN45119.1    PYGN01000324    PSN48495.1    AZNE01000717    KID80942.1    PYGN01000047    PSN56294.1    PYGN01000219    PSN50892.1    PYGN01001382    PSN35227.1    PYGN01000070    PSN55417.1    GGMR01006433    MBY19052.1    PYGN01001004    PSN38555.1    PYGN01000502    PSN45243.1    ABLF02039015    PYGN01001494    PSN34463.1    ABLF02066124    GGMR01000126    MBY12745.1    GGMR01020071    MBY32690.1    GGMR01010991    MBY23610.1    ABLF02019047    ABLF02019049    GEHC01000890    JAV46755.1    ABLF02036907    ABLF02036915    ABLF02036922    ABLF02041419    PYGN01000212    PSN51056.1    ABLF02009557    ABLF02016497    ABLF02041313    ABLF02041567    ABLF02062088    GAPW01000151    JAC13447.1    PYGN01000107    PSN54137.1    GGMR01016675    MBY29294.1    ABLF02018097    ABLF02043469    ABLF02056908    ABLF02018925    ABLF02003877    ABLF02042991    AJWK01020943    ABLF02027703    ABLF02061609    GEZM01048836    JAV76363.1   

Proteomes

UP000245037    UP000252770    UP000007801    UP000092462    UP000036403    UP000279307    + More
UP000007798    UP000050602    UP000235965    UP000031176    UP000007819    UP000092461   

PRIDE

D7F170   

Pfam

PF00078   RVT_1        + More
PF03372   Exo_endo_phos
PF14529   Exo_endo_phos_2
PF13359   DDE_Tnp_4

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000637   HMGI/Y_DNA-bd_CS       
IPR027806   HARBI1_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F170   A0A2P8YGI5   A0A2P8ZAY7   A0A023F0H0   A0A023F0F3   A0A023EZ18   + More
A0A2P8Z0K7   A0A2L2YFD0   A0A2M4CRR0   A0A0K8SN56   A0A2M4CRT4   A0A0K8TRS6   A0A0K8TJE5   A0A2M4A3Y0   A0A2M4A3Z2   A0A2M4ACI4   A0A2M4A809   A0A2M4A2X8   A0A2M4A3H0   A0A367YPS2   A0A0U4HM41   A0A0P8Y4M6   A0A2M4A6U1   A0A0P8Y6K1   A0A0N8NZU6   A0A0P8Y5F3   A0A0P8ZWR4   A0A0P9A604   A0A1B0DRK3   A0A023EXX8   A0A0J7KMY2   A0A0V0G8V1   T1E1T8   A0A146KNZ7   A0A023F0M0   A0A3L8DEM2   A0A0A9WI21   A0A0P8Y0P3   A0A2P8YTB7   A0A0P8Y3A6   A0A0P8XIG1   A0A0P9AMX6   A0A0P9BSL5   A0A0P8Y7V9   A0A0P9AAF4   A0A0P8XDM7   A0A0P8XJ08   A0A023EZ68   A0A2P8YYC9   A0A023EWL3   A0A023EX67   A0A069DWW0   A0A2P8YFW0   A0A0Q9WVM4   A0A0N8NYW2   A0A0N8P264   A0A0R3Q7D3   A0A2S2PCU1   A0A0A9WEG0   A0A2P8XC08   A0A0V0G616   A0A0K8S3X2   A0A2P8YPE1   A0A2P8ZGH9   A0A2M4BN64   A0A2J7QCQ8   A0A2P8Z488   A0A2P8ZLT6   A0A060Q6A2   A0A2P8YLJ1   A0A2P8YWA2   A0A0B4GMM2   A0A2P8ZIH1   A0A2P8Z313   A0A2P8XT91   A0A2P8ZFZ0   A0A2S2NQ16   A0A2P8Y2S1   A0A2P8YLY7   J9KNQ8   A0A2P8XR21   J9LFP1   A0A2S2N6G4   A0A2S2PT92   A0A2S2P2F5   J9KHI9   A0A1W7R6Q7   X1X9T6   A0A2P8Z3H5   X1X8T7   A0A023EWM1   A0A2P8ZCA4   A0A2S2PIT5   J9L6X2   J9KH77   J9LBF3   A0A1B0CNV0   J9L287   A0A1Y1LRT6  

PDB

6AR3     E-value=0.00172926,     Score=100

KEGG

101744029    no KO assigned | (RefSeq) nascent polypeptide-associated complex subunit alpha, muscle-specific form

GO

GO:0003964   GO:0004519   GO:0006355  

Length:

596

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0317099999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00215

outside

1  -  596

 

 

Pi

8.793408

Theta

13.183642

Tajima's D

-0.882737

CLR

18.271027

CSRT

0.156042197890105

Interpretation

Uncertain