Gene

KWMTBOMO13370  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010941

Annotation

PREDICTED:_signal_recognition_particle_subunit_SRP72_[Amyelois_transitella]

Location

Bomo_Chr22(-):15337807-15347838      View in EpiBrowser

Full name

Signal recognition particle subunit SRP72      

Location in the cell

Cytoplasmic   Reliability : 1.645 Nuclear   Reliability : 2.163

CDS

ATGTCAGCCAACAAGGAGAATAACCTTGTTCAGGCTTATCTTGAATTAAATAAATTTTGCCAGAGCAGTGACTATGAAAGAGCTTTAAAAGCTGCAGGGAAAATACTGCAGATAGCACCAAATGAGCAGAAAGCATTTCATTGCAAAGTGGTATGCTTTCTCCAACTCCACAACTTCAAGGAGGCTCTAGCGACATTAACCAATGCCAAGAACTCAGCGTTAGCAGCAGACCTGCTCTTTGAGAAGGCATACGCTCAATACCGTCTCAATTCACCTAAAGAAGCACTACAAACTGTTGATAGTGCCCCTGAATTGACACCCGCTTTAAAGGAATTAAGGGCTCAAATTTTATACCGCTTAGAGCAATACCAAGACTGCTACAATTTATACCGTGATCTACTGAAGAACACCACTGATGAGTATGAAGATGAGAGGAAAGCCAACATGGCCGCTGTTGTAGCTAACTTGGCAGCACTTAATCCAACGTCAGAGCTGCCGCAGTTTGATGAAAACACATACGAATTGGCATACAACTCGGGCAGCACTTTGGCAATGCGGGGGAAGTATAATGAAGCTTTGTCAGTCTTAAAGAGAGCCGAACAAGCCTGTTCTGAGAGTGTAATAGATGATGGAGGCACTGAGGAAGAGGCTAAAGAAGAAGCTGCCATTATAAGGGTCCAACAAGCTTATTGTCTTCAGCAAATAAACAGGGAGAAGGAAGCGGCTACTATTTACCAGAACATTCTGAAGGACAAACCCAGCGATCAGGCATTAGTCGCGATTGCTAGCAATAATATCATTGTTATAAACAGGGACACGAACGTGTTCGATTCTCGTAAACGCATGAAGGCGGCCACTGCGGATGGACTAGAACACAAACTAAACTCCCGTCAACGAGCTGTCATCACTTATAATCAAGCCATACTCTCTATTTACTCTAATCAACCGGACTTCTGCAAGCAGTGCTGTGTGAAACTGGTCCGTGACTTCGGCGAGGATCGTCGCGCCGCCATTGTGGAGGCGTCCTCGCTCGTCAAGGAAGGGAAGGCATCGCAGGCAGTCAGCTTACTGCTCAAACACGGAGGGACATTGACATTGGCAGCCGTACAGATACTACTCGTTAATGGTGACCGTAAAGCAGCGATCAAGCTGTTACAAGAGAGCGAGTACAAGCATCGTCCCGGAGTCGTGGGAGTGCTGTGCACGCTGCTCTGTGCAGACAACGAGCTGGAGAAGGCCTCGCTGATGTTCGATGAACTATACGAGCACGTCAAGAACGATGCAGAGAGGATGAAGCTGTACCGCGGGGCGTGGCGGGGCGCGGCGCGGTGCCACGGGCGGGCGGGGCGCGCGGGGGCGGCGGCGCGCGCGCACGAGGCGCTGGCGGCGGTGGAGCCGCGGGACGCGCGCAGCCTGGCGCGGCTGGTGAAGGCGCTGGCGGCCGCCGACCCGCCCCGCGCCCGGAGCCTGGCCGAACAGCTGCCGCCCTTGGACCAGCTCGAGACGAAAATCGATATTGACGCCCTGGAATCGTCGAAGTGGATGATGGGAGCTAAAGTCGTCAAGAAGACTGTTCAAAGCAAGCAGGAACAATCCCCCGGAACTCCCGGCTCTGAGTTGGGACAGAAGAAGAAAACGAAACGCAAGCGCAACAGCAAACTCCCGCCGAACGCAGACCTCTCCAAACCTCCCGATCCGGAAAGGTGGTTACCAAAGTACGAGCGAACTGCGTACAGAAAGCGACGAGGCATTAGACGTGACGTCATCAAGGGTAGCCAAGGAATGTCCACCACTGCCACGGATCAATATGACATGAGTAAACAGCAGACCACGCCTACCCCGGCGACCTCTGCCAAGAGTCCCCGGGTCGAAGTCAAGCAGACCGAGAGCGCTTGGCAGCGCAAGCAACAGCAGAAGAAGAAAGGCAAGGGACGTAAATGGTAG

Protein

MSANKENNLVQAYLELNKFCQSSDYERALKAAGKILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTNAKNSALAADLLFEKAYAQYRLNSPKEALQTVDSAPELTPALKELRAQILYRLEQYQDCYNLYRDLLKNTTDEYEDERKANMAAVVANLAALNPTSELPQFDENTYELAYNSGSTLAMRGKYNEALSVLKRAEQACSESVIDDGGTEEEAKEEAAIIRVQQAYCLQQINREKEAATIYQNILKDKPSDQALVAIASNNIIVINRDTNVFDSRKRMKAATADGLEHKLNSRQRAVITYNQAILSIYSNQPDFCKQCCVKLVRDFGEDRRAAIVEASSLVKEGKASQAVSLLLKHGGTLTLAAVQILLVNGDRKAAIKLLQESEYKHRPGVVGVLCTLLCADNELEKASLMFDELYEHVKNDAERMKLYRGAWRGAARCHGRAGRAGAAARAHEALAAVEPRDARSLARLVKALAAADPPRARSLAEQLPPLDQLETKIDIDALESSKWMMGAKVVKKTVQSKQEQSPGTPGSELGQKKKTKRKRNSKLPPNADLSKPPDPERWLPKYERTAYRKRRGIRRDVIKGSQGMSTTATDQYDMSKQQTTPTPATSAKSPRVEVKQTESAWQRKQQQKKKGKGRKW

Description

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane.

Similarity

Belongs to the SRP72 family.

Uniprot

A0A2H1V6P4   S4P286   A0A212FAZ2   A0A194PZD6   A0A194REL1   A0A067RSF1   + More
A0A2J7PZF5   A0A0C9R6H6   A0A1B6F764   A0A0K8TLY5   E0VYM3   A0A0L7QN09   A0A0J7KZ88   E2AD30   A0A1Q3F9F8   E2BIP9   B0XFF2   A0A1L8DW84   A0A182G6Q7   A0A195FKD6   A0A1I8MHA3   T1PET2   A0A0M9A046   A0A151IG22   A0A1B0CFH1   A0A151IXR6   Q17FK4   A0A182G1E5   A0A1I8NU27   A0A232F8D1   D3TM83   U5EXU8   E9IAT5   A0A2A3EFH3   A0A1A9VB90   A0A1A9ZHL9   A0A1B0BNL0   K7IR24   A0A1A9XGA0   A0A154PKL0   A0A026VVC8   A0A034WNJ2   A0A1B0G7Y6   A0A0A1WGI1   A0A0K8W570   W8BIH7   A0A195BAN3   F4WRA0   A0A088A4L7   A0A1B0DK34   A0A0P4WFU4   T1IQJ0   A0A131XGM6   A0A1E1XRG6   L7MA07   A0A023GNZ0   A0A3M7P871   A0A3Q3IWM8   G3MFM4   I3IYX9   A0A3Q2X3D2   A0A3Q1HXB1   A0A218UNK1   R0JCR9   U3JW70   A0A3P9B384   A0A3P8PXC2   A0A3B4EWF4   A0A1U7RR68   U3IMM8   A0A1A8DJV1   G3PWX0   A0A1A8AH52   A0A1A8HNT3   A0A1V4JSV7   A0A1A8RS77   A0A091E493   A0A3B4YEZ5   Q5ZKZ5   A0A2I4CG33   A0A1V4JSU5   A0A0Q3PKI8   A0A3B5ABY4   A0A087XCI9   A0A3B3UTR6   A0A1U7SPL9   A0A286X7B1   G3VBY3   A0A2I3S3Y1   A0A384CY45   A0A3Q7XPF4   A0A1A7YYU5   A0A383YRC2   K7DN16   A0A2R9CBA5   K7CCE7   V9HWK0  

Pubmed

23622113    22118469    26354079    24845553    26369729    20566863    + More
20798317    26483478    25315136    17510324    28648823    20353571    21282665    20075255    24508170    30249741    25348373    25830018    24495485    21719571    28049606    29209593    25576852    30375419    22216098    25186727    23749191    15592404    15642098    21993624    21709235    16136131    24813606    22722832    11181995   

EMBL

ODYU01000963    SOQ36513.1    GAIX01012145    JAA80415.1    AGBW02009396    OWR50915.1    + More
KQ459586    KPI98104.1    KQ460323    KPJ15899.1    KK852446    KDR23740.1    NEVH01020335    PNF21717.1    GBYB01011934    JAG81701.1    GECZ01023661    JAS46108.1    GDAI01002467    JAI15136.1    DS235845    EEB18479.1    KQ414885    KOC59861.1    LBMM01001886    KMQ95608.1    GL438658    EFN68666.1    GFDL01010830    JAV24215.1    GL448520    EFN84443.1    DS232921    EDS26725.1    GFDF01003579    JAV10505.1    JXUM01148643    JXUM01148644    KQ570607    KXJ68334.1    KQ981512    KYN40821.1    KA647204    AFP61833.1    KQ435803    KOX73099.1    KQ977739    KYN00219.1    AJWK01010103    AJWK01010104    AJWK01010105    AJWK01010106    KQ980795    KYN13028.1    CH477270    EAT45339.1    JXUM01136598    KQ568453    KXJ68994.1    NNAY01000669    OXU27091.1    EZ422535    ADD18811.1    GANO01000742    JAB59129.1    GL762061    EFZ22318.1    KZ288266    PBC30234.1    JXJN01017452    KQ434948    KZC12385.1    KK107796    QOIP01000013    EZA47743.1    RLU15374.1    GAKP01003611    GAKP01003609    JAC55343.1    CCAG010010579    GBXI01016163    JAC98128.1    GDHF01005976    JAI46338.1    GAMC01009737    JAB96818.1    KQ976532    KYM81598.1    GL888284    EGI63317.1    AJVK01035231    GDRN01060279    JAI65393.1    AFFK01018331    GEFH01003333    JAP65248.1    GFAA01001524    JAU01911.1    GACK01005085    JAA59949.1    GBBM01000613    JAC34805.1    REGN01012711    RMZ94947.1    JO840675    AEO32292.1    AERX01009965    MUZQ01000223    OWK54942.1    KB744596    EOA94766.1    AGTO01021376    ADON01132353    HADZ01016045    HAEA01005298    SBQ33778.1    HADY01015070    SBP53555.1    HAED01000226    SBQ86071.1    LSYS01006437    OPJ75278.1    HAEI01009828    HAEH01021791    SBS08886.1    KN120907    KFO37385.1    AADN05000017    AJ719939    CAG31598.1    OPJ75279.1    LMAW01002336    KQK81523.1    AYCK01014770    AYCK01014771    AAKN02028318    AEFK01224946    AEFK01224947    AACZ04033994    HADX01013167    SBP35399.1    GABE01002719    JAA42020.1    AJFE02017999    AJFE02018000    AJFE02018001    GABF01000270    NBAG03000215    JAA21875.1    PNI82513.1    EU794663    CH471057    ACJ13717.1    EAX05496.1   

Proteomes

UP000007151    UP000053268    UP000053240    UP000027135    UP000235965    UP000009046    + More
UP000053825    UP000036403    UP000000311    UP000008237    UP000002320    UP000069940    UP000249989    UP000078541    UP000095301    UP000053105    UP000078542    UP000092461    UP000078492    UP000008820    UP000095300    UP000215335    UP000242457    UP000078200    UP000092445    UP000092460    UP000002358    UP000092443    UP000076502    UP000053097    UP000279307    UP000092444    UP000078540    UP000007755    UP000005203    UP000092462    UP000276133    UP000261600    UP000005207    UP000264840    UP000265040    UP000197619    UP000016665    UP000265160    UP000265100    UP000261460    UP000189705    UP000016666    UP000007635    UP000190648    UP000028990    UP000261360    UP000000539    UP000192220    UP000051836    UP000261400    UP000028760    UP000261500    UP000189704    UP000005447    UP000007648    UP000002277    UP000261680    UP000291021    UP000286642    UP000261681    UP000240080   

PRIDE

V9HWK0   

Pfam

PF17004   SRP_TPR_like        + More
PF08492   SRP72
PF09976   TPR_21
PF09295   ChAPs
PF07776   zf-AD
PF00096   zf-C2H2
PF01395   PBP_GOBP
PF13181   TPR_8
PF13174   TPR_6
PF01535   PPR
PF00025   Arf

Interpro

IPR019734   TPR_repeat        + More
IPR011990   TPR-like_helical_dom_sf       
IPR026270   SRP72       
IPR031545   SRP_TPR-like       
IPR013699   Signal_recog_part_SRP72_RNA-bd       
IPR013026   TPR-contain_dom       
IPR018704   TPR_21       
IPR015374   ChAPs       
IPR012934   Znf_AD       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR036728   PBP_GOBP_sf       
IPR006170   PBP/GOBP       
IPR002885   Pentatricopeptide_repeat       
IPR027417   P-loop_NTPase       
IPR006689   Small_GTPase_ARF/SAR       

SUPFAM

SSF48452   SSF48452        + More
SSF57667   SSF57667       
SSF47565   SSF47565       
SSF52540   SSF52540       

Gene 3D

1.25.40.10    

ProteinModelPortal

A0A2H1V6P4   S4P286   A0A212FAZ2   A0A194PZD6   A0A194REL1   A0A067RSF1   + More
A0A2J7PZF5   A0A0C9R6H6   A0A1B6F764   A0A0K8TLY5   E0VYM3   A0A0L7QN09   A0A0J7KZ88   E2AD30   A0A1Q3F9F8   E2BIP9   B0XFF2   A0A1L8DW84   A0A182G6Q7   A0A195FKD6   A0A1I8MHA3   T1PET2   A0A0M9A046   A0A151IG22   A0A1B0CFH1   A0A151IXR6   Q17FK4   A0A182G1E5   A0A1I8NU27   A0A232F8D1   D3TM83   U5EXU8   E9IAT5   A0A2A3EFH3   A0A1A9VB90   A0A1A9ZHL9   A0A1B0BNL0   K7IR24   A0A1A9XGA0   A0A154PKL0   A0A026VVC8   A0A034WNJ2   A0A1B0G7Y6   A0A0A1WGI1   A0A0K8W570   W8BIH7   A0A195BAN3   F4WRA0   A0A088A4L7   A0A1B0DK34   A0A0P4WFU4   T1IQJ0   A0A131XGM6   A0A1E1XRG6   L7MA07   A0A023GNZ0   A0A3M7P871   A0A3Q3IWM8   G3MFM4   I3IYX9   A0A3Q2X3D2   A0A3Q1HXB1   A0A218UNK1   R0JCR9   U3JW70   A0A3P9B384   A0A3P8PXC2   A0A3B4EWF4   A0A1U7RR68   U3IMM8   A0A1A8DJV1   G3PWX0   A0A1A8AH52   A0A1A8HNT3   A0A1V4JSV7   A0A1A8RS77   A0A091E493   A0A3B4YEZ5   Q5ZKZ5   A0A2I4CG33   A0A1V4JSU5   A0A0Q3PKI8   A0A3B5ABY4   A0A087XCI9   A0A3B3UTR6   A0A1U7SPL9   A0A286X7B1   G3VBY3   A0A2I3S3Y1   A0A384CY45   A0A3Q7XPF4   A0A1A7YYU5   A0A383YRC2   K7DN16   A0A2R9CBA5   K7CCE7   V9HWK0  

PDB

6FRK     E-value=3.49645e-77,     Score=736

KEGG

101746382    K03108 signal recognition particle subunit SRP72 | (RefSeq) signal recognition particle subunit SRP7

PATHWAY

03060    Protein export - Bombyx mori (domestic silkworm)

GO

GO:0005786   GO:0006614   GO:0008312   GO:0048500   GO:0016021   GO:0005634   GO:0008270   GO:0005549   GO:0005623   GO:0042493   GO:0030911   GO:0043022   GO:0005047   GO:0005783   GO:0005525   GO:0005515   GO:0031386   GO:0048869   GO:0003676   GO:0016491   GO:0015930  

PANTHER

PTHR14094  

Subcellular location

Cytoplasm  

Length:

647

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05124

Exp number, first 60 AAs:

0.00011

Total prob of N-in:

0.00237

outside

1  -  647

 

 

Pi

26.309953

Theta

23.595731

Tajima's D

0.155186

CLR

0.36164

CSRT

0.419479026048698

Interpretation

Uncertain