Silkworm Genome Informatics Database

Gene

KWMTBOMO13369 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010930

Annotation

rRNA_processing_protein_Ebp2_[Bombyx_mori]

Location

Bomo_Chr22(+):15333009-15336624 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.05

CDS

ATGACTGATTTTATTGTCAATGACAGCGAGTCGGATTTAGATTCAGATGAAGAGTTACAAGAAGCATTCGCGAAGGGTCTAATAAAACCGGGTCTCAACGAAGAAATAGAAAAGATTGAAAAGAAATACACTAATAACGTTGCGGACTTAAAAGTCAAGTTAACCGAGATAAAATTAAATCTGCCATGGGTGGAGAAGCTGGATCTGGTTACAACAATCGCGCCTCTGGCTCCAGACGTTGCGTTACAAATGCAAGAAACAGCACAGAGAAGGAAGAATCTGAAAGAAAATAGTAAGGGTAATATTCAGTATGATCCTACTCAAGATCCAGTATTGAATGAGTTTAAGCGTGAGAATTTAATCCATCGACAGGCACAAGCTGCTGTAGTAGAAGGACTTAAAAAGCTCAAAGAACTTGGTATTGCCACTAGAAGACCTGATGATTATTTTGCTGAAATGGCTAAGACAGATGAGCACATGCAGAAAGTACGTAAGAATTTGATGGCCAAGCAAGCAGCACAGTCGCGCGTCGAGAAAGTTCGACAATTAAGAGAACAGAAGAAGATTGCTAAGAGAGTACAGATTGACACGAAATTGAAACAAGCTGCTGAAAAGAAGCAGATGTTGGAACAATTGAAACGTGTGAGGAAAGGAAAAGCCTCAGATTTAGACTTTTTGGACGACAAAAAAGGCAAAAATAGCAAAGGAAAAGGAGTCCAGGATAAAATATCCAAGAAAAGGGATCTCAAAAACAAAAAGTTTGGTTTCGGTGGTAAAAAGAAAGGGTCCAAATTGAATACAAGAGAATCTACTCACAATATGGACGGTTTTAACAACGCTTCCAAAAAATCGGTTAATTTCAAAAATAAAACTTTCAATACGAAGAAGAAAAACCAAAGGCCAGGCAAATCTAAACGAAAAAATAAGCGATAG

Protein

MTDFIVNDSESDLDSDEELQEAFAKGLIKPGLNEEIEKIEKKYTNNVADLKVKLTEIKLNLPWVEKLDLVTTIAPLAPDVALQMQETAQRRKNLKENSKGNIQYDPTQDPVLNEFKRENLIHRQAQAAVVEGLKKLKELGIATRRPDDYFAEMAKTDEHMQKVRKNLMAKQAAQSRVEKVRQLREQKKIAKRVQIDTKLKQAAEKKQMLEQLKRVRKGKASDLDFLDDKKGKNSKGKGVQDKISKKRDLKNKKFGFGGKKKGSKLNTRESTHNMDGFNNASKKSVNFKNKTFNTKKKNQRPGKSKRKNKR

Uniprot

Q2F5S0 H9JN27 A0A2A4ISF8 A0A1E1W7Z2 A0A194RDH9 A0A194Q3X2 + More
A0A212FB01 S4NP57 A0A2H1X1W6 A0A0L7LMP9 A0A1J1HZX6 U4UG01 N6U5E5 A0A067R7I2 Q16X80 A0A182HAQ5 A0A1B6HTD5

Pubmed

19121390 26354079 22118469 23622113 26227816 23537049 + More
24845553 17510324 26483478

EMBL

DQ311353 ABD36297.1 BABH01030518 NWSH01008721 PCG62436.1 GDQN01007989 + More
JAT83065.1 KQ460323 KPJ15898.1 KQ459586 KPI98105.1 AGBW02009396 OWR50916.1 GAIX01011979 JAA80581.1 ODYU01012785 SOQ59267.1 JTDY01000572 KOB76629.1 CVRI01000036 CRK93090.1 KB632100 ERL88825.1 APGK01041782 KB740997 ENN75871.1 KK852651 KDR19453.1 CH477545 EAT39238.1 JXUM01031656 KQ560930 KXJ80301.1 GECU01029762 JAS77944.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000007151 UP000037510 + More
UP000183832 UP000030742 UP000019118 UP000027135 UP000008820 UP000069940 UP000249989

PRIDE

Q2F5S0 H9JN27

Pfam

PF05890 Ebp2

Interpro

IPR008610 Ebp2

ProteinModelPortal

Q2F5S0 H9JN27 A0A2A4ISF8 A0A1E1W7Z2 A0A194RDH9 A0A194Q3X2 + More
A0A212FB01 S4NP57 A0A2H1X1W6 A0A0L7LMP9 A0A1J1HZX6 U4UG01 N6U5E5 A0A067R7I2 Q16X80 A0A182HAQ5 A0A1B6HTD5

PDB

6EM5 E-value=7.42807e-09, Score=143

KEGG

692935 K14823 rRNA-processing protein EBP2 | (RefSeq) rRNA processing protein Ebp2

GO

PANTHER

PTHR13028

Length:

310

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00137

Exp number, first 60 AAs:

3e-05

Total prob of N-in:

0.08134

outside

1 - 310

Pi

18.622369

Theta

17.619152

Tajima's D

0.111642

CLR

0.849886

CSRT

0.409329533523324

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics