Gene

KWMTBOMO13367

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr22(-):15268831-15270048      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.43

CDS

ATGTGGGAAAGCCTAGAAAAGCAAGGTATACCAGAAACATATTTAGACATTATCAAAAATATATATGCAAACAGTAAAGCAAAAATCCAGTTAGAAACCCTGGGAAAAGAATTCGGAATCAAGCGAGGAGTCAGGCAGGGAGACCCAATGTCCCCAAAGTTGTTTTCAGCAGTGCTAGAGAACGTCTTTCGCAACCTTGACTGGGAACATCTAGGCCTCAACATAGACGGACGGAAACTAAACCACTTAAGATTCGCGGACGATATAGTTCTGCTTGAAGAAAATCCAAAGGCACTCGAAAAGATGATCCAAGCTCTAAATACTGAAAGCTCCAAAGTGGGGTTAAAAATGAACATAACAAAAACGAAATTGATGACTAACTCAGAAATAAGGCCCATTGAAATTGATGGACAAAAAGTAGAATATGTTGACGAATATTGCTACTTGGGTCAGATCATCTCCCCTAAAGACCAAACAACCAAGGAAATAAATAAGAGGATTGCTAATGGGTGGAAAAAATACTGGTCTCTTAAGGAAGTTGTAAAAGCTAAAGAACACAATATGGCAACGAAGAGGAAAGTATTCAATACTTGTATTCTCCCATGCATCACATACGGCTGCGAAACATGGTCCCTTACAAAACACCATAGAGAAAAACTGGGAAAGTGCCAGAGAGGTATGGAACGAAGCATGACAGGAACAAGAAGACAAGATAGAGTTAGCAATGTGCAATTAAGAGAAAAAACAAAACTAACTGACATCCTGGAAAAAATAGACCTCCAAAAATGGAGATGGACCGGCCATATGTTGAGATCTAGACAAGAAAAGTGGAGTCAAATTATAACGAACTGGTATCCAAGAGATGGCAAGAGGTGTCGAGGACGTCAACAAATGCGATGGGAAAATGAGCTGAAACTTACCGCCGGACCCAAATGGAGAAGAGTTGCTCAAGATAGAAAACAATGGAGACTACTGGAGGAGGCCTTTGCCAGAAGGCACACTGAGTTGAGAGACATCTTATAA

Protein

MWESLEKQGIPETYLDIIKNIYANSKAKIQLETLGKEFGIKRGVRQGDPMSPKLFSAVLENVFRNLDWEHLGLNIDGRKLNHLRFADDIVLLEENPKALEKMIQALNTESSKVGLKMNITKTKLMTNSEIRPIEIDGQKVEYVDEYCYLGQIISPKDQTTKEINKRIANGWKKYWSLKEVVKAKEHNMATKRKVFNTCILPCITYGCETWSLTKHHREKLGKCQRGMERSMTGTRRQDRVSNVQLREKTKLTDILEKIDLQKWRWTGHMLRSRQEKWSQIITNWYPRDGKRCRGRQQMRWENELKLTAGPKWRRVAQDRKQWRLLEEAFARRHTELRDIL

Uniprot

A0A2W1BCS2   D7F179   A0A2H1VY30   D7F176   A0A2W1BSQ8   A0A2W1BDX2   + More
A0A2W1B5F8   D7F178   A0A224XSN7   D7F177   A0A023EXV2   A0A2G8K4F2   A0A2W1BZV1   A0A069DZM5   W4YXJ1   A0A2G8KES6   A0A2H1WF27   D7F164   A0A3S2TAR4   A0A3S2TRE0   A0A2H1VS24   D7F157   D7F166   A0A0R3Q573   A0A2W1BLC9   A4KWF4   A4KWF2   A0A2G8JFM9   A0A1E1X2U1   A4KWG0   A0A016U3R5   D7F159   D7F165   D7F158   A0A016W591   A0A016TIA8   D7F160   A0A2W1BMB6   A0A016UWI5   A0A016UTS3   A0A016WEQ1   A0A016S795   A0A016WA79   A0A016V6V0   A0A016VVN3   A0A016S5B2   A0A016UMK7   A0A016T7J7   A0A016RYK0   A0A016RXU5   A0A016V7H3   W4YXJ0   A0A016VV56   A0A016SUK5   A0A016S1D2   A0A016WCB8   A0A016ULU9   A0A016WPY4   A0A016VCD9   A0A016VEC1   A0A023EWU8   A0A016VBP7   A0A3S2KX72   A0A0P4VWD0   A0A069DX96   A0A016TUG1   A0A016UJL8   A0A016S949   A0A016WC44   A0A016WKV3   A0A016UR05   W6NEE1   A0A016T590   A0A016VMK8   A0A016WMQ0   A0A016VCU3   A0A016S403   A0A016U784   A0A0K0FAW8   A0A016S6T9   A0A0R3QIP3   A0A016USZ5   G0MZ46   E3NBP3   E3NSE7   A0A016TQ81   A0A016TH80   E3NJD4   A0A016VN75   A0A016VBB9   A0A016UUF2   A0A016VGM4   A0A016VDZ6   A0A016VTY8   A0A016TX70   A0A016S7F6   A0A016S4R3   A0A016S524   A0A016VPL5  

Pubmed

28756777    20470440    25474469    29023486    26334808    17360547    + More
28503490    25730766    27129103   

EMBL

KZ150485    PZC70710.1    FJ265564    ADI61832.1    ODYU01004982    SOQ45402.1    + More
FJ265561    ADI61829.1    KZ149912    PZC78089.1    KZ150108    PZC73382.1    KZ150317    PZC71439.1    FJ265563    ADI61831.1    GFTR01005437    JAW10989.1    FJ265562    ADI61830.1    GBBI01004876    JAC13836.1    MRZV01000899    PIK42833.1    KZ149907    PZC78256.1    GBGD01000380    JAC88509.1    AAGJ04144474    MRZV01000640    PIK46507.1    ODYU01008249    SOQ51673.1    FJ265549    ADI61817.1    RSAL01002362    RVE40503.1    RSAL01000016    RVE53061.1    ODYU01004088    SOQ43598.1    FJ265542    ADI61810.1    FJ265551    ADI61819.1    UZAG01000503    VDO08661.1    KZ149985    PZC75698.1    EF113399    EF113400    ABO45233.1    EF113398    EF113401    ABO45231.1    MRZV01002136    PIK34564.1    GFAC01005640    JAT93548.1    EF113402    ABO45239.1    JARK01001396    EYC09581.1    FJ265544    ADI61812.1    FJ265550    ADI61818.1    FJ265543    ADI61811.1    JARK01000807    EYC34984.1    JARK01001434    EYC02684.1    FJ265545    ADI61813.1    KZ150072    PZC74016.1    JARK01001362    EYC18843.1    EYC18844.1    JARK01000347    EYC38051.1    JARK01001621    EYB86109.1    JARK01000460    EYC36749.1    JARK01001351    EYC23394.1    JARK01001340    EYC30828.1    JARK01001626    EYB85833.1    JARK01001370    EYC16151.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01001677    EYB83167.1    EYB83168.1    EYC23395.1    AAGJ04050748    EYC31295.1    JARK01001512    EYB94036.1    JARK01001655    EYB84321.1    JARK01000388    EYC37469.1    EYC16150.1    JARK01000173    EYC41342.1    JARK01001348    EYC25050.1    EYC25048.1    GBBI01004877    JAC13835.1    EYC25049.1    RSAL01002130    RVE40575.1    GDKW01001596    JAI54999.1    GBGD01000453    JAC88436.1    JARK01001414    JARK01001412    EYC06128.1    EYC06440.1    JARK01001372    EYC15539.1    JARK01001608    EYB86877.1    JARK01000449    EYC36872.1    JARK01000224    EYC40226.1    JARK01001367    EYC17351.1    CAVP010058300    CDL94394.1    JARK01001473    EYB97806.1    JARK01001343    EYC28635.1    JARK01000189    EYC40935.1    EYC25046.1    JARK01001639    EYB85201.1    JARK01001389    EYC11015.1    JARK01001615    EYB86390.1    UZAG01005986    VDO18177.1    JARK01001364    EYC18031.1    GL379822    EGT48339.1    DS268587    EFO92044.1    DS269943    EFO90109.1    JARK01001423    EYC04578.1    JARK01001438    EYC02012.1    DS268736    EFP00597.1    JARK01001344    EYC28218.1    JARK01001349    EYC24735.1    JARK01001361    EYC19034.1    JARK01001346    EYC26784.1    EYC25257.1    JARK01001341    EYC30223.1    JARK01001407    EYC07212.1    JARK01001612    EYB86585.1    JARK01001636    EYB85342.1    EYB85344.1    JARK01001342    EYC29360.1   

Proteomes

UP000230750    UP000007110    UP000283053    UP000050602    UP000024635    UP000025227    + More
UP000035680    UP000008068    UP000008281   

PRIDE

D7F179    D7F176    D7F178    D7F177    D7F164    D7F157    + More
D7F166    D7F159    D7F165    D7F158    D7F160   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF13855   LRR_8
PF01826   TIL

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR032675   LRR_dom_sf       
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR029052   Metallo-depent_PP-like       
IPR036084   Ser_inhib-like_sf       
IPR002919   TIL_dom       
IPR017452   GPCR_Rhodpsn_7TM       

SUPFAM

SSF56219   SSF56219        + More
SSF57567   SSF57567       

Gene 3D

3.60.10.10     3.80.10.10     3.60.21.10    

ProteinModelPortal

A0A2W1BCS2   D7F179   A0A2H1VY30   D7F176   A0A2W1BSQ8   A0A2W1BDX2   + More
A0A2W1B5F8   D7F178   A0A224XSN7   D7F177   A0A023EXV2   A0A2G8K4F2   A0A2W1BZV1   A0A069DZM5   W4YXJ1   A0A2G8KES6   A0A2H1WF27   D7F164   A0A3S2TAR4   A0A3S2TRE0   A0A2H1VS24   D7F157   D7F166   A0A0R3Q573   A0A2W1BLC9   A4KWF4   A4KWF2   A0A2G8JFM9   A0A1E1X2U1   A4KWG0   A0A016U3R5   D7F159   D7F165   D7F158   A0A016W591   A0A016TIA8   D7F160   A0A2W1BMB6   A0A016UWI5   A0A016UTS3   A0A016WEQ1   A0A016S795   A0A016WA79   A0A016V6V0   A0A016VVN3   A0A016S5B2   A0A016UMK7   A0A016T7J7   A0A016RYK0   A0A016RXU5   A0A016V7H3   W4YXJ0   A0A016VV56   A0A016SUK5   A0A016S1D2   A0A016WCB8   A0A016ULU9   A0A016WPY4   A0A016VCD9   A0A016VEC1   A0A023EWU8   A0A016VBP7   A0A3S2KX72   A0A0P4VWD0   A0A069DX96   A0A016TUG1   A0A016UJL8   A0A016S949   A0A016WC44   A0A016WKV3   A0A016UR05   W6NEE1   A0A016T590   A0A016VMK8   A0A016WMQ0   A0A016VCU3   A0A016S403   A0A016U784   A0A0K0FAW8   A0A016S6T9   A0A0R3QIP3   A0A016USZ5   G0MZ46   E3NBP3   E3NSE7   A0A016TQ81   A0A016TH80   E3NJD4   A0A016VN75   A0A016VBB9   A0A016UUF2   A0A016VGM4   A0A016VDZ6   A0A016VTY8   A0A016TX70   A0A016S7F6   A0A016S4R3   A0A016S524   A0A016VPL5  

PDB

5HHL     E-value=0.0881237,     Score=83

KEGG

105842941    no KO assigned | (RefSeq) uncharacterized LOC105842941

GO

GO:0003964   GO:0004519   GO:0016021  

Length:

340

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03036

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01245

outside

1  -  340

 

 

Pi

5.195628

Theta

14.375825

Tajima's D

-0.838803

CLR

3.908824

CSRT

0.167591620418979

Interpretation

Uncertain