Silkworm Genome Informatics Database

Gene

KWMTBOMO13366

Pre Gene Modal

BGIBMGA010929

Annotation

PREDICTED:_hairy/enhancer-of-split_related_with_YRPW_motif_protein_isoform_X5_[Bombyx_mori]

Location

Bomo_Chr22(+):15259209-15301374 View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear Reliability : 4.542

CDS

ATGGAAACACGACATTATTGGGAGGAAAACGGACATGCCGTTAAATACGACAATTACAACTCAAACGATGGTTTCGGTCGTGTGTCGGGAGAGCAGCTCAGCTTCGCGGCGCCCTCCGAGGACGAAGCCGAGTACCCGCCCGGCTCCTACCTCAAGAAGGGGAAGGTCTCAAGGCAAGATCCGATGTCGCACCGGATCATTGAGAAGAGACGCCGCGATCGGATGAACAACTGCCTTGCGGACCTGTCGAGGCTCATTCCTCCGGAGTACCTGAAGAAGGGCCGCGGTCGCGTCGAGAAGACCGAGATCATAGAGATGGCGATCAGGCACCTCAAGTACCTGCAAGAGCGGGTCAATGCTGCTGAACGGACGTCCGGCGAGGAGTACAGGGCTGGTTACCAGGAGGCCGTGGCTGAAGCCGTGAGGTTCCTCGTCGAAGTCCAGGGCTACGGACCGGGAGACGGACTTTCCGTGTCCATGACGTCGCATCTGCAGAGGCATTGCGAAGCCATTACTAAAGGCGAACCGGTGCATCGAGAGAAGAGCCGGTCACATCCCGGGGGCTCGTCCTCGGAGACAGCCAGCTCATCCAGCAGCTCCCACGGGTACGCGGTGAAGGTTATAGCCAGCGCGCCGCCGCCAGCGCCGCCCACCTTTACCCAGGAGCCCTACGACGAACGACCTCCGGGACCTTACTCTATGGACTGCGATAGAGTTCCAGTGAATCAAGTGTCTGGTGCCGAGGGTGAGGCAGCCCGGGAGGGTCGGGACGCGGAGCTGGTGACTGCGGACCCCCGCCGCAAGTGCGAGCCCACACTACGGGCTATCAGGAAGCCGGAACACACAGAAGACTATCTACACTCATACAAATTCAAGAATTCTATTGAAAGGCGATTTTCGAGATCGCAGGATGAGGCAGCTGAGCAAGCGGTGCGCATCGGTCACGGCCGCGTGTACTCACACAAGCGCCGTCGCGCCGCCAAGCCCGCGCCCTCCACCTCCACATCCGCGTCCGGCTCCACCGAAGAAGCCCGGGACACATCGCCGCAGGACACGTCTAGTGATTCGCCACATCATCACCATTACGAGAAACCTCCGCCTCCGACGCAATACGTTCCGGTATTCGCATTGAATGCTCTAGGAAAATATTACGTGCCACTGAGTGTAGACTACGCATGCTTGGCGCGTCACCTCGGGCCATATGATGTACTAGACGCTCGCGCGGTACATCTCTCTGCTCCGTTGCATCCTGTTACCATCCACGTCAACTTCCAACCGTGCCTAAACTATCACGTCAAGCGAGAACCAGCCGAACGCGAGTGGCGCCCTACTTAA

Protein

METRHYWEENGHAVKYDNYNSNDGFGRVSGEQLSFAAPSEDEAEYPPGSYLKKGKVSRQDPMSHRIIEKRRRDRMNNCLADLSRLIPPEYLKKGRGRVEKTEIIEMAIRHLKYLQERVNAAERTSGEEYRAGYQEAVAEAVRFLVEVQGYGPGDGLSVSMTSHLQRHCEAITKGEPVHREKSRSHPGGSSSETASSSSSSHGYAVKVIASAPPPAPPTFTQEPYDERPPGPYSMDCDRVPVNQVSGAEGEAAREGRDAELVTADPRRKCEPTLRAIRKPEHTEDYLHSYKFKNSIERRFSRSQDEAAEQAVRIGHGRVYSHKRRRAAKPAPSTSTSASGSTEEARDTSPQDTSSDSPHHHHYEKPPPPTQYVPVFALNALGKYYVPLSVDYACLARHLGPYDVLDARAVHLSAPLHPVTIHVNFQPCLNYHVKREPAEREWRPT

Uniprot

H9JN26 A0A1X9PYJ2 A0A2A4IXY7 A0A194PXQ7 A0A194RIX8 A0A3S2NUU1 + More
A0A2H1W640 A0A212FB19

Pubmed

19121390 26354079 22118469

EMBL

BABH01030522 KX236197 ARQ15181.1 NWSH01005697 PCG64042.1 KQ459586 + More
KPI98107.1 KQ460323 KPJ15896.1 RSAL01000068 RVE49275.1 ODYU01006442 SOQ48292.1 AGBW02009396 OWR50919.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240 UP000283053 UP000007151 + More

PRIDE

H9JN26

Pfam

PF07527 Hairy_orange + More
PF00010 HLH

Interpro

IPR036638   HLH_DNA-bd_sf        + More
IPR011598   bHLH_dom
IPR003650   Orange_dom

SUPFAM

SSF47459 SSF47459

Gene 3D

4.10.280.10

CDD

cd00083 HLH

ProteinModelPortal

H9JN26 A0A1X9PYJ2 A0A2A4IXY7 A0A194PXQ7 A0A194RIX8 A0A3S2NUU1 + More
A0A2H1W640 A0A212FB19

PDB

4F3L E-value=0.00254408, Score=97

KEGG

101746519 no KO assigned | (RefSeq) hairy/enhancer-of-split related with YRPW motif protein

GO

GO:0046983 GO:0006355 GO:0003677 GO:0005634 GO:0005200 GO:0005525 GO:0031386 GO:0048869 GO:0003676 GO:0016491 GO:0015930

Subcellular location

Nucleus

Length:

444

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00772999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01531

outside

1 - 444

Pi

21.326984

Theta

18.397039

Tajima's D

0.362698

CLR

1.046993

CSRT

0.480125993700315

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics