Silkworm Genome Informatics Database

Gene

KWMTBOMO13342

Pre Gene Modal

BGIBMGA010946

Annotation

PREDICTED:_glutamate_receptor-interacting_protein_2_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr22(-):14170155-14193945 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.837

CDS

ATGGTCACGACTCTGAAGTATAAACGGCCTCCGACCACCGGTCATCCTCATGTAATGAGGGATAAGAGCAAGAAGAAGAAGAAACTTTTGGGTCGATCAGAACCCGGGATCGCTCCATCTATTGTGGGCTTCACGAAGGACTCGGTCGCCCACGAGTCCGACCGGCTAGCCCCTGGTGACAGGATTTGCAGCGTGAACGGTATCTCCACGGCGCGACTCACTAATGACGAAGTTCTTCGGCTACTGGACAATGTGGAAGAACGAGCTTCACTTGAAGTGGAATATTACATGCCTAATTATGCATCGCAAAACTCGCTCTACATCACAACCAAGCTAGCAGAGGTCCCGGTGGAGAAGATTAATGGATCGTTAGGAGTGACTATACGTGGTGGCCTACCGGAGAACTCAGCTCCAAGTGCGGATCTAGTCCTGAACAGCAGGTCCCTTGATGCTCAGCCACTGGTGGTCACTCATGTGAGGCCTGGCGGAGCAGCCTACAATACTTCAAGAATAAAGCCTGGTGATCGATTGTTGAAAGTTGATCATATTTCCCTAACCAACAAAACACTATCAGAAGTCCACCAAATACTCCAGAATTGTCCTCAAGTAACCAGTCTCACGATAGAATATGACGTTTCTATCATGGAGTCGGTGAAATTGGCAACCGGTCCCCTCCTGATCGAGATAGAAAGGCCTTGCAATGAAGACTTAGGATTGTTTTTGAGTAACCAAAGGATACCTGATGACGTGTACAGTTCAGGGTCTGATACTTATCAGAGGGTTGGTGGCTGTAATGCTATATTCATAGACAGTATACTACCAGCCAGTATAAGTGACAGGTGCGGTGCTCTACATCCCGGAGACCAGCTCCTGGCTTTCGACGATCACGTCATTGACGGAAACAATTATACCGCCGAAGAGGTGATGTGCTATTTGGAAAATTGCGAAGGCGGTTTCACGAGACTTCATATAGCACCGAGGCATGTTTTAGCCCATGCTGGACGGTTCACCCGAGAAAACTCAGTATCCGGCTCGTCGACCCTCAACGCTAAGAAGCACAGGCAAAGGAACTTCAGACAAAGTTCGATGCCAAAACTTGGCTTAACAGACGATTACGCAGAAAATCAGCAGAACTATATGAGCATGGGCGTGTGTCGCGTGGAGTCTCTCAACATCCAGCTGGAAGTGCCTCCAGGCCAAAGCAGCGGTTTGGCTGTCCACGAAGACAACACTGTACTTGTTATTTCACATGTATCTTCTCAGTCACCAGCTTATCGGTCTGGCTGCTTGCAAATCAGGGACAGAGTAATGTCCATCAATGGACATGAAAACCTAACTGTTGATGTTGCAAATGAAATTTTACAAAGAAGAAATGATTCGCATAACAACAAATACTTAACTTTAAATGTGGAATTCAGTATGCCTAATACCATAGAAGCGTCTAGTGGTGTGTTTAATGTTAAATTAGCTAAAACTACTGCTGGCCTTGGAGTAACAATTACAGGGTGTAAGCAGAAATTATTGAGTAATGAAGAACCAATGATGATATCAGACATCAAGCCGGGATCGGTTGCACATCGAAGTGGAGCTCTTGCCCCGGGAGATCAACTCCTAGCTATCAATGGACAGCCACTACATAATTTATCGCTAGACACAGCATTTAATATACTACAGAATTCACCAGAAGACATAATTACGTTGAAGGTTAGAAAAAGAGATTTAACAGAAGACTGGTCAAATGTACACAAGAACGCAAAACTTACCTTGCAAAGTTTCAGTAATATAGAAACTAAAGCTGTAGTGCACAGCGGAGAAGATTCAGGACATCATACTGATAGTCCAAACAACAGTGCTAAAGAAAGTGAAAGAAGCCATTGTAGTAACGAAAATAATGCTGTTTTCACTGTAGAGCTCATAAAGCAAGAAAACGGTCCCTTAGGATTAACGATTGCGGGTAGCGAAGATATAAACCAACCTATTCTGTTAAGTGGATTGGTGGAAGGTGGTGTGGCTGAGAAGTGTGGTAAACTAGCTATAGGTGATGAACTGTTGAGTATAAATGGTGAAAGTGTTTTGAACAAACCATTGTCGGAAGCTATAAAATTACTACAACAAAGTGGTCAAAGAGTTCAGTTGCAACTGTGCAGGAAAGTAACAGGATCTTTGGATAATGCAGAATCAGCGAGTGCAAGGGATTCTAGCCATTCGACATCAAGTCCAGGCTTATCTAACGATAGTGCTGTTGAATCCTGGGATCAGAATACACCAGTTAGAACAAGCGCGAACTGTGGTACCTCAGAAATTATAGAATACGCAGTTCCAGATAAAAGCCGAATTACGGAGAAACAACCATATTCTCCATCGGATGATGATAAGCTTATGGCTTCATTCAACTCAGCCGCACCATACACTATCAACGACTTACCACTACCAAACTATTCTTTGAATAATTCGCTTAAAACTTTCCATTATGAAAATAACTGTATCATTCCTGAAGCTACGCTAAAAAATAAACAAAATATAACGAGAGAAGACGACGTGCAGCAAATTGAAATTTTGACCTCGACAATGAAAGACTGCAAATTGCATAACATGGAAAGATCTTCGTGCAAATGTGAATACGTGCAGATGAGACCATATGGTTTTGTATCACCGAAAACCAGGAGGCCTGATTGGGATGATTTTTTGAATAACGGTATCTACACGGTAACAACACCTCAGAAATCACCAATGAAGCCCGGTGTTCCGGGAACAAGCTTTCAGTTCTCCACAAGCCCTATTTACGAAAATGACGTCCCAGGTTTATACAGTACCGAGACATTGTCCCCGGCTAAAGGATCTATTCATCATGTCATTTTGTACAAAGACGCAATCTACGATGATTACGGATTCTCTGTGTCAGACGGATTGTATGAAAGGGGGGTTTATATCAACCGGATTAGGAAGGGCGGCCCTGCAGATATCGTCGGTTTGCTACGGCCTTACGACAGGATTTTACAGGTGAATGGAACACGAACAGTGGATTACGATTGCTGTTTGACAGTACCATTGATAGCGGCCGCTGGTGATCGTCTCGAAATTGTGGTCCAAAGGCTTGTTACGTCCCGAGAATTGAAAAATCAGAGGTTTGAGGATAGCTCCAGCCCGAGTGAAAGTAGTATAGTGACGAAGACGATTTAG

Protein

MVTTLKYKRPPTTGHPHVMRDKSKKKKKLLGRSEPGIAPSIVGFTKDSVAHESDRLAPGDRICSVNGISTARLTNDEVLRLLDNVEERASLEVEYYMPNYASQNSLYITTKLAEVPVEKINGSLGVTIRGGLPENSAPSADLVLNSRSLDAQPLVVTHVRPGGAAYNTSRIKPGDRLLKVDHISLTNKTLSEVHQILQNCPQVTSLTIEYDVSIMESVKLATGPLLIEIERPCNEDLGLFLSNQRIPDDVYSSGSDTYQRVGGCNAIFIDSILPASISDRCGALHPGDQLLAFDDHVIDGNNYTAEEVMCYLENCEGGFTRLHIAPRHVLAHAGRFTRENSVSGSSTLNAKKHRQRNFRQSSMPKLGLTDDYAENQQNYMSMGVCRVESLNIQLEVPPGQSSGLAVHEDNTVLVISHVSSQSPAYRSGCLQIRDRVMSINGHENLTVDVANEILQRRNDSHNNKYLTLNVEFSMPNTIEASSGVFNVKLAKTTAGLGVTITGCKQKLLSNEEPMMISDIKPGSVAHRSGALAPGDQLLAINGQPLHNLSLDTAFNILQNSPEDIITLKVRKRDLTEDWSNVHKNAKLTLQSFSNIETKAVVHSGEDSGHHTDSPNNSAKESERSHCSNENNAVFTVELIKQENGPLGLTIAGSEDINQPILLSGLVEGGVAEKCGKLAIGDELLSINGESVLNKPLSEAIKLLQQSGQRVQLQLCRKVTGSLDNAESASARDSSHSTSSPGLSNDSAVESWDQNTPVRTSANCGTSEIIEYAVPDKSRITEKQPYSPSDDDKLMASFNSAAPYTINDLPLPNYSLNNSLKTFHYENNCIIPEATLKNKQNITREDDVQQIEILTSTMKDCKLHNMERSSCKCEYVQMRPYGFVSPKTRRPDWDDFLNNGIYTVTTPQKSPMKPGVPGTSFQFSTSPIYENDVPGLYSTETLSPAKGSIHHVILYKDAIYDDYGFSVSDGLYERGVYINRIRKGGPADIVGLLRPYDRILQVNGTRTVDYDCCLTVPLIAAAGDRLEIVVQRLVTSRELKNQRFEDSSSPSESSIVTKTI

Uniprot

H9JN43 A0A2H1WBM9 A0A212F8D7 A0A194PXT1 A0A0L7LGF8 A0A194RIV9 + More
A0A139WBK1 A0A139WBI3 A0A1Y1JYP3 A0A1Y1JXJ7 A0A2J7QRT2 A0A2J7QRT5 V8P6X9 A0A3B3XW95 A0A3B4FZF1 A0A3P8PHX5 A0A3P9CTI8 A0A3Q4HND9 A0A3Q2V5D5 A0A3P8PI10 A0A3P9CV88 A0A3Q0GGG4 A0A0P6JF71 A0A3Q0GFY7 A0A151PF63 W5KVG0 A0A3Q0GK50 A0A3Q0GJV6

Pubmed

19121390 22118469 26354079 26227816 18362917 19820115 + More
28004739 24297900 25186727 22293439 25329095

EMBL

BABH01030620 BABH01030621 ODYU01007518 SOQ50356.1 AGBW02009744 OWR50006.1 + More
KQ459586 KPI98132.1 JTDY01001228 KOB74474.1 KQ460323 KPJ15876.1 KQ971372 KYB25283.1 KYB25284.1 GEZM01101989 JAV52126.1 GEZM01101990 JAV52125.1 NEVH01011884 PNF31302.1 PNF31304.1 AZIM01000619 ETE70080.1 GEBF01004327 JAN99305.1 AKHW03000416 KYO47726.1

Proteomes

UP000005204 UP000007151 UP000053268 UP000037510 UP000053240 UP000007266 + More
UP000235965 UP000261480 UP000261460 UP000265100 UP000265160 UP000261580 UP000264840 UP000189705 UP000050525 UP000018467

PRIDE

H9JN43

Pfam

PF00595 PDZ + More
PF17820 PDZ_6

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036034   PDZ_sf
IPR001478   PDZ
IPR041489   PDZ_6
IPR030029   GRIP2
IPR030026   GRIP1

SUPFAM

SSF50156 SSF50156

ProteinModelPortal

H9JN43 A0A2H1WBM9 A0A212F8D7 A0A194PXT1 A0A0L7LGF8 A0A194RIV9 + More
A0A139WBK1 A0A139WBI3 A0A1Y1JYP3 A0A1Y1JXJ7 A0A2J7QRT2 A0A2J7QRT5 V8P6X9 A0A3B3XW95 A0A3B4FZF1 A0A3P8PHX5 A0A3P9CTI8 A0A3Q4HND9 A0A3Q2V5D5 A0A3P8PI10 A0A3P9CV88 A0A3Q0GGG4 A0A0P6JF71 A0A3Q0GFY7 A0A151PF63 W5KVG0 A0A3Q0GK50 A0A3Q0GJV6

PDB

2QT5 E-value=6.95276e-28, Score=313

KEGG

101738969 K20251 glutamate receptor-interacting protein | (RefSeq) glutamate receptor-interacting protein 2

GO

GO:0003676 GO:0016020 GO:0098887 GO:0030159 GO:0016358 GO:0005515 GO:0046872 GO:0007017 GO:0005200 GO:0005525 GO:0031386 GO:0048869 GO:0016491 GO:0015930

PANTHER

PTHR46227:SF4 PTHR46227:SF3

Length:

1059

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00824999999999997

Exp number, first 60 AAs:

0.00722

Total prob of N-in:

0.00041

outside

1 - 1059

Pi

286.790465

Theta

173.147911

Tajima's D

2.072519

CLR

0.256646

CSRT

0.892955352232388

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics