Gene

KWMTBOMO13316

Pre Gene Modal

BGIBMGA004673

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_NRDP1_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr22(+):13470503-13478084      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.085 Extracellular   Reliability : 1.533 Nuclear   Reliability : 1.777

CDS

ATGGGCTTTGAAATCAAAAGGTTTCAAGGTGACGTCGATGAGGAGCTTATTTGTCCTATTTGTTCCGGAGTCCTCGAAGACCCGTTACAGGCGCCTGCTTGTGAGCACGCGTTTTGTCGAGCTTGTATTACGGAGTGGATCAGTAGACAGCCTACCTGTCCTGTAGACCGGCAAACGGTAACCGCGAGTCAGCTAAGGCCAGTTCCAAGGATACTGCGCAACCTTCTGTCCAGATTATGCACAAGTTGCGACAATGCTCCACATGGCTGTAATGCCATTTTAAAACTGGACTCTCTACCTAATCATTTAGTTGAATGTGAATTTAATCCTAAACGACCAATACCTTGTGAGGCAGGATGTGGACTGGTGATACCAAAAGATGAATTAGCCCAACATAATTGTGTACGTGAGCTTAGAGCACTGATAGCCACTCAGCAGGGGAAGCTGAATGATTACCAGCAAGAACTGGCTGAACAGAGGCTCGTTATTAATGAGCACAAACGAGAATTGGCATTATTAAAGGAGTTCATGAGAGCGATGCGCGTGTCGAATCCAACGATGCGTGCATTGGCGGATCAGATGGAGCGCGAGGAGGTGGTGCGCTGGGCCAACTCACTGGCCAGGGCGAGGGTCACCAGGTGGGGTGGCATGATCTCTACTCCAGATGATGTTCTGCAGATGATGATCAAACGAAGTTTATCGGAATCCGGCTGTCCCCCGCACATCATAGACGATCTAATGGAAAATTGTCACGAGAGGCGGTGGCCGCCAGGACTGTCGTCACTTGAAACTAGACAAAATAATAGAAGGCTATACGAAAAGTATGTTTGCAAGAGGGTGCCAGGCAAACAGGCGGTGCTGGTTCTTCATTGCGACAACACACACGTCGACGAGCACATGATGGTGGAGCCCGGGCTGGTCATGATATTCGCGCACGGAATCGAATAG

Protein

MGFEIKRFQGDVDEELICPICSGVLEDPLQAPACEHAFCRACITEWISRQPTCPVDRQTVTASQLRPVPRILRNLLSRLCTSCDNAPHGCNAILKLDSLPNHLVECEFNPKRPIPCEAGCGLVIPKDELAQHNCVRELRALIATQQGKLNDYQQELAEQRLVINEHKRELALLKEFMRAMRVSNPTMRALADQMEREEVVRWANSLARARVTRWGGMISTPDDVLQMMIKRSLSESGCPPHIIDDLMENCHERRWPPGLSSLETRQNNRRLYEKYVCKRVPGKQAVLVLHCDNTHVDEHMMVEPGLVMIFAHGIE

Uniprot

H9J583   A0A2W1BEA4   A0A2H1VCY0   S4PMP3   A0A3S2LLG9   A0A212FFD8   + More
A0A194R0D1   A0A194Q3R8   A0A2P8XFY7   A0A0L7LFW6   D6WGM9   A0A067R6S9   A0A1Y1M640   A0A1W4WA64   A0A1Y1M5C6   A0A1B6MSB0   A0A1B6HBA2   A0A1B6H2Y3   A0A1B6JK80   A0A1B6DME2   B0WME8   A0A1Q3F005   A0A0L0CI22   Q16ZL3   A0A182H3I4   A0A1I8QAI9   A0A0K8TL53   A0A026WX55   A0A1I8MK42   A0A182YJV2   A0A182MAF7   A0A182PEF0   A0A182V5A5   A0A182K6I9   A0A182U4W8   A0A182VQX0   A0A182KM54   A0A182XBM6   A0A182R1H9   A0A182I0G0   A0A182J059   A0A1A9W504   A0A084VRV4   W8B4J5   A0A182N5W7   A0A182QDP0   U5EWD6   A0A2M3ZC42   A0A2M4AV76   A0A182FQL2   A0A158NT07   A0A2A3E0V4   A0A088AEN9   A0A0K8VEH3   A0A034WAV0   A0A0A1XDR0   A0A1B0FPS9   A0A1A9UFX4   A0A1A9ZKL4   A0A1A9XY67   A0A0P4WCC4   W5J2C6   A0A0M4EKQ1   A0A0M9A7X4   B4J3P9   A0A195EGE8   F4WY68   E2BME8   Q7PUE3   A0A224XNV6   A0A023F576   T1HUN5   A0A069DRG8   B4LDY7   A0A310SRA9   E2AZT5   A0A0L7QSD4   B4KYI9   A0A336MRI9   A0A0P4W8H9   B4N716   A0A1J1ITP7   Q9VUV7   A0A1W4VBA8   A0A0J9RVZ0   B4HIK9   B3NDP1   B4ITX0   Q2M0J1   B4GRK0   A0A3B0JSB1   B3M9V0   A0A151X6Q9   A0A2P2I081   A0A232F6V3   K7J621   A0A2R7W8M1   E9GFX6   A0A0A9W4D3   A0A0P9AKJ0  

Pubmed

19121390    28756777    23622113    22118469    26354079    29403074    + More
26227816    18362917    19820115    24845553    28004739    26108605    17510324    26483478    26369729    24508170    30249741    25315136    25244985    20966253    24438588    24495485    21347285    25348373    25830018    20920257    23761445    17994087    21719571    20798317    12364791    14747013    17210077    25474469    26334808    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    17550304    15632085    28648823    20075255    21292972    25401762   

EMBL

BABH01039726    KZ150103    PZC73482.1    ODYU01001882    SOQ38709.1    GAIX01003450    + More
JAA89110.1    RSAL01000068    RVE49285.1    AGBW02008829    OWR52440.1    KQ460883    KPJ11248.1    KQ459586    KPI98055.1    PYGN01002281    PSN30920.1    JTDY01001262    KOB74352.1    KQ971321    EFA00158.1    KK852665    KDR19009.1    GEZM01040036    GEZM01040034    JAV80981.1    GEZM01040037    GEZM01040035    JAV80982.1    GEBQ01007891    GEBQ01001155    JAT32086.1    JAT38822.1    GECU01035730    JAS71976.1    GECZ01000748    JAS69021.1    GECU01008204    JAS99502.1    GEDC01010454    JAS26844.1    DS231997    EDS31005.1    GFDL01014164    JAV20881.1    JRES01000371    KNC31880.1    CH477489    EAT40061.1    JXUM01003829    KQ560164    KXJ84065.1    GDAI01002973    JAI14630.1    KK107078    QOIP01000011    EZA60428.1    RLU16814.1    AXCM01000368    APCN01002074    ATLV01015783    KE525036    KFB40698.1    GAMC01014592    JAB91963.1    AXCN02000189    GANO01001467    JAB58404.1    GGFM01005363    MBW26114.1    GGFK01011354    MBW44675.1    ADTU01025465    KZ288470    PBC25347.1    GDHF01015364    JAI36950.1    GAKP01008019    JAC50933.1    GBXI01005216    GBXI01004147    GBXI01002809    JAD09076.1    JAD10145.1    JAD11483.1    CCAG010001380    GDRN01081672    GDRN01081671    JAI61975.1    ADMH02002134    ETN58397.1    CP012525    ALC44801.1    KQ435724    KOX78296.1    CH916366    EDV97280.1    KQ978957    KYN27313.1    GL888439    EGI60825.1    GL449207    EFN83132.1    AAAB01008987    EAA01676.4    GFTR01004918    JAW11508.1    GBBI01002483    JAC16229.1    ACPB03009605    GBGD01002226    JAC86663.1    CH940647    EDW70030.1    KQ761005    OAD58421.1    GL444277    EFN61064.1    KQ414758    KOC61552.1    CH933809    EDW18800.1    UFQS01002272    UFQT01002272    SSX13636.1    SSX33062.1    GDRN01081674    JAI61973.1    CH964168    EDW80155.1    CVRI01000057    CRL02478.1    AE014296    AY051931    AAF49566.1    AAK93355.1    AGB94597.1    CM002912    KMY99881.1    CH480815    EDW41639.1    CH954178    EDV52174.1    CM000159    CH891734    EDW94946.2    EDW99833.1    CH379069    EAL30941.1    CH479188    EDW40385.1    OUUW01000009    SPP85015.1    CH902618    EDV40141.1    KQ982476    KYQ56057.1    IACF01001752    LAB67435.1    NNAY01000849    OXU26210.1    KK854465    PTY16086.1    GL732542    EFX81716.1    GBHO01040297    GBRD01016831    JAG03307.1    JAG48996.1    KPU78384.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053240    UP000053268    UP000245037    + More
UP000037510    UP000007266    UP000027135    UP000192223    UP000002320    UP000037069    UP000008820    UP000069940    UP000249989    UP000095300    UP000053097    UP000279307    UP000095301    UP000076408    UP000075883    UP000075885    UP000075903    UP000075881    UP000075902    UP000075920    UP000075882    UP000076407    UP000075900    UP000075840    UP000075880    UP000091820    UP000030765    UP000075884    UP000075886    UP000069272    UP000005205    UP000242457    UP000005203    UP000092444    UP000078200    UP000092445    UP000092443    UP000000673    UP000092553    UP000053105    UP000001070    UP000078492    UP000007755    UP000008237    UP000007062    UP000015103    UP000008792    UP000000311    UP000053825    UP000009192    UP000007798    UP000183832    UP000000803    UP000192221    UP000001292    UP000008711    UP000002282    UP000001819    UP000008744    UP000268350    UP000007801    UP000075809    UP000215335    UP000002358    UP000000305   

PRIDE

H9J583    Q9VUV7   

Pfam

PF08941   USP8_interact        + More
PF00097   zf-C3HC4

Interpro

IPR015036   NRDP1        + More
IPR001841   Znf_RING       
IPR037255   NRDP1_C       
IPR013083   Znf_RING/FYVE/PHD       
IPR003613   Ubox_domain       
IPR017907   Znf_RING_CS       
IPR008974   TRAF-like       
IPR018957   Znf_C3HC4_RING-type       

SUPFAM

SSF49599   SSF49599        + More
SSF160088   SSF160088       

Gene 3D

3.30.40.10    

ProteinModelPortal

H9J583   A0A2W1BEA4   A0A2H1VCY0   S4PMP3   A0A3S2LLG9   A0A212FFD8   + More
A0A194R0D1   A0A194Q3R8   A0A2P8XFY7   A0A0L7LFW6   D6WGM9   A0A067R6S9   A0A1Y1M640   A0A1W4WA64   A0A1Y1M5C6   A0A1B6MSB0   A0A1B6HBA2   A0A1B6H2Y3   A0A1B6JK80   A0A1B6DME2   B0WME8   A0A1Q3F005   A0A0L0CI22   Q16ZL3   A0A182H3I4   A0A1I8QAI9   A0A0K8TL53   A0A026WX55   A0A1I8MK42   A0A182YJV2   A0A182MAF7   A0A182PEF0   A0A182V5A5   A0A182K6I9   A0A182U4W8   A0A182VQX0   A0A182KM54   A0A182XBM6   A0A182R1H9   A0A182I0G0   A0A182J059   A0A1A9W504   A0A084VRV4   W8B4J5   A0A182N5W7   A0A182QDP0   U5EWD6   A0A2M3ZC42   A0A2M4AV76   A0A182FQL2   A0A158NT07   A0A2A3E0V4   A0A088AEN9   A0A0K8VEH3   A0A034WAV0   A0A0A1XDR0   A0A1B0FPS9   A0A1A9UFX4   A0A1A9ZKL4   A0A1A9XY67   A0A0P4WCC4   W5J2C6   A0A0M4EKQ1   A0A0M9A7X4   B4J3P9   A0A195EGE8   F4WY68   E2BME8   Q7PUE3   A0A224XNV6   A0A023F576   T1HUN5   A0A069DRG8   B4LDY7   A0A310SRA9   E2AZT5   A0A0L7QSD4   B4KYI9   A0A336MRI9   A0A0P4W8H9   B4N716   A0A1J1ITP7   Q9VUV7   A0A1W4VBA8   A0A0J9RVZ0   B4HIK9   B3NDP1   B4ITX0   Q2M0J1   B4GRK0   A0A3B0JSB1   B3M9V0   A0A151X6Q9   A0A2P2I081   A0A232F6V3   K7J621   A0A2R7W8M1   E9GFX6   A0A0A9W4D3   A0A0P9AKJ0  

PDB

2FZP     E-value=4.49052e-45,     Score=455

KEGG

101743736    K11981 E3 ubiquitin-protein ligase NRDP1 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase NRDP1

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0061630   GO:0046872   GO:0016874   GO:0017022   GO:0051445   GO:0004842   GO:0000209   GO:0008270   GO:0005515   GO:0016567   GO:0016881   GO:0031386   GO:0048869   GO:0003676   GO:0016491   GO:0015930  

Length:

315

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00019

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01138

outside

1  -  315

 

 

Pi

180.261987

Theta

169.507399

Tajima's D

0.025913

CLR

0.18874

CSRT

0.374181290935453

Interpretation

Uncertain