Silkworm Genome Informatics Database

Gene

KWMTBOMO13303

Pre Gene Modal

BGIBMGA004695

Annotation

high_mobility_group_protein_A_[Bombyx_mori]

Location

Bomo_Chr22(+):13127311-13128691 View in EpiBrowser

Transcription factor

HMGA

Location in the cell

Nuclear Reliability : 4.304

CDS

ATGTCTGACGACGGTTCAACAGTTGTTGAAAAGAAAGGACGCGGTAGACCAAAAGCCAATGGAACACAACCTGAGTCGAAAGAACTTAAAAAACGAGGTCGGCCTCCAGCTGCCACCAGAACAAAAGATTCTGCTAAGTCTTCTGATGATGAACAAGCACCAGTAGCTAAACGAGGTAGAGGCAGACCAAAAGGTTCCAAGAAAAAAGCGGGAGTCAAGGGCAAGGGTGAAGGTAGAGGTCGTGGACGGCCACGCAAAGATGCACCACCTCCAAAAAAAGATGCTGCTTCTACTGAGGAAGAACAGGACGAGGATGAAGAAGATGAAGGATCTGAAGACCAATAA

Protein

MSDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVAKRGRGRPKGSKKKAGVKGKGEGRGRGRPRKDAPPPKKDAASTEEEQDEDEEDEGSEDQ

Uniprot

NA

ProteinModelPortal

NA

KEGG

100134920 K09283 high mobility group AT-hook protein 2 | (RefSeq) Hmga; high mobility group protein A

GO

GO:0003677 GO:0007264 GO:0007165 GO:0016020 GO:0008270 GO:0051287 GO:0048869 GO:0003676 GO:0016491 GO:0015930

Length:

114

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.17372

outside

1 - 114

Pi

25.950727

Theta

39.891755

Tajima's D

-1.711243

CLR

3.683561

CSRT

0.0360981950902455

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics