Silkworm Genome Informatics Database

Gene

KWMTBOMO13296 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004704

Annotation

PREDICTED:_golgi-associated_PDZ_and_coiled-coil_motif-containing_protein-like_[Bombyx_mori]

Location

Bomo_Chr22(-):13023596-13036500 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.747

CDS

ATGAATGATGCGGAGCTGGTCGATATGAGGGCGGAGCTGGTGCAGGCTAGAGCGGCATCGGCTGGGTGTCTAGAATCTGGCGATACTGCCGGAAATGTTTTAGACGCAGCACGCGCTCGGTCGGAAGCTGCGCAACTTGCGAGAGAAAATGCGGCTCTGCGTGAAACCGTACTCGGATTACATTCGGAACTATTTGGCGCCAGATTAGCTACAAAATACCTCGATAAAGAACTCGCCGGCAGAATACAACAGTTGCAGTTATTAGGCAGAGATATGCGAGCGGAAGTCAGGGATTCGCTTTGGGCGCAGGTGGAGGCTGAAATCTTACTACAGAGACACAAGACCCTGGTCCGCGTGTGTCGCGGCGTGTCCCCCCGGCCGGCGCGTCCCCCCGCTCCCCCCGCCTCCCCTCCTGCCGCGCCGCCCGCCCCCCGCGCGCGCCCCCGCACCGTGCGGGTGCGACGCTCGCCGCATCTAGGACTGGGCATCTCCGTCACTGGCGGACGAGAACACGGGGTCCCGATACTGATCTCCGAGCTGGAGGCTGGGGGGCCGGCCGCGCTCACCGGGGAGCTCTACGTCGGAGACGCCATACTCGCCATCAACGACGTCGACCTCACTCAGGCGTGCCACAAGGAAGCCGTGCAGGCGCTGCAGAGCGTCAAGGGCGACTGCGCCCTCTGCGTGCAGTTCATAGCGACCGACGACGACGACAGGCTCTCCGAAGACAACTACAGGTTCCCGCTGTACCCGGAGGACGGAGACGTGTTCCCGGGCGAACCCGACGGCTCCGGAGCCACGCCCACTGCGCCGCGCACTCCCGACTACACCAGCGACGTGAGCAGGGCCGGGTCGGAGGAGTGCGCGGCGGCACGCTACCCGGACTACAACGCCGTCAACAACAACCTCAACATACTCGACATGGACGACCACTCCATCAAGATCGAGACTAGACTAGAGTGGAACGCTTGTCGTTCGTCGGGCGAGTCGGCTCATTCGACGCCCGTGCACGTCCGGAGCCACATCAACAAGAAGAAACGTAAACCGCAGGACTGGCGTACGAAGGGTGCGTACCGCCCCGTGGAGCTGGAGACTCCCTCGTCCGACGAGCCGCACGCCGGGAACACGCCCCGGGACCAGCGCGCCCTCCCCGACACTGCAGCCGAGTCACCGCCAATACCACCACCGCTGCAAGTCAAGGAGGCGAATCCGCCTCTGATAGATCTAGTCAACAAACCGGAGTCAACGGAAAAAATGAACGGTGACCTCACTCCAGTTTTCGAATCAAAACCGAACGGCGATGTGAAGACAGTTAGAAGAGAAAGTAAGACTTTCAGGATAGGTACGGCGCGTCGCGTTACCGACATCTCCGGATTGGCAGTGAGTATCGGTGAGAGTCGTCCCGCGCGCCTCCTGCCCGGGGATGGCGACCCGGACTTCGGCACCCCGGTCTGA

Protein

MNDAELVDMRAELVQARAASAGCLESGDTAGNVLDAARARSEAAQLARENAALRETVLGLHSELFGARLATKYLDKELAGRIQQLQLLGRDMRAEVRDSLWAQVEAEILLQRHKTLVRVCRGVSPRPARPPAPPASPPAAPPAPRARPRTVRVRRSPHLGLGISVTGGREHGVPILISELEAGGPAALTGELYVGDAILAINDVDLTQACHKEAVQALQSVKGDCALCVQFIATDDDDRLSEDNYRFPLYPEDGDVFPGEPDGSGATPTAPRTPDYTSDVSRAGSEECAAARYPDYNAVNNNLNILDMDDHSIKIETRLEWNACRSSGESAHSTPVHVRSHINKKKRKPQDWRTKGAYRPVELETPSSDEPHAGNTPRDQRALPDTAAESPPIPPPLQVKEANPPLIDLVNKPESTEKMNGDLTPVFESKPNGDVKTVRRESKTFRIGTARRVTDISGLAVSIGESRPARLLPGDGDPDFGTPV

Uniprot

H9J5B4 A0A2H1VCA1 A0A194PXD8

Pubmed

19121390 26354079

EMBL

BABH01037025 BABH01037026 BABH01037027 BABH01037028 BABH01037029 ODYU01001764 + More
SOQ38416.1 KQ459586 KPI98011.1

Proteomes

UP000005204 UP000053268

PRIDE

H9J5B4

Pfam

PF00595 PDZ

Interpro

IPR038879   GOPC        + More
IPR036034   PDZ_sf
IPR001478   PDZ

SUPFAM

SSF50156 SSF50156

ProteinModelPortal

H9J5B4 A0A2H1VCA1 A0A194PXD8

PDB

2DC2 E-value=3.18595e-16, Score=209

KEGG

101738845 no KO assigned | (RefSeq) golgi-associated PDZ and coiled-coil motif-containing protein-like

GO

GO:0005794 GO:0043004 GO:0005515 GO:0003950 GO:0005634 GO:0006471 GO:0008270 GO:0051287 GO:0048869 GO:0003676 GO:0016491 GO:0015930

PANTHER

PTHR16528

Length:

484

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000830000000000001

Exp number, first 60 AAs:

0.0001

Total prob of N-in:

0.00377

outside

1 - 484

Pi

199.172264

Theta

2.220106

Tajima's D

0.460288

CLR

112.476554

CSRT

0.548022598870056

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics