SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13285
Pre Gene Modal
BGIBMGA004712
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_treacle_protein_[Bombyx_mori]
Location
Bomo_Chr22(-):12820198-12855296      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.287
 

Sequence

CDS
ATGGTAGTGGGCGAAAATAAGCGCACCGCCAATATCATGGACGGGATCGAAAACACCGGCGACGTGCGTATGCACGACCACCGGCTGAGGCTCAAACAAAGATTTGACATAGTAAGAAAATTAGGACAAGGCACGTACGGCAAGGTGCAGCTCGGTATCAACAAGAAGACCGGTCAGGAAGTGGCCATTAAGACAATAAAGAAATGCAAGATCGAATCTGAAGCGGATCTGATTCGTATAAGAAGAGAAGTACAGATCATGTCGTCGGTCAGACATCCAAACATTGTACATATCTATGAAGTATTCGAAAACAGTGAAAAAATGATCCTAGTGATGGAATACTGTTCCGGTGGCGAACTGTACGATTATCTCAGTCAGAGGAAAGTGTTACAAGAGGATGAAGCCCGAAGGCTTTTCAGACAAATCGCCACTGCGGTGTATTACTGTCACATTCACAAAATCTGTCACAGAGATTTGAAATTAGAAAACGTATTGTTAGACGATACTGGAAGCGCTAAGATCGCGGACTTTGGTTTGTCGAACGTTTTCAAAGAAACGTCTCTGCTGTCCACGTTCTGCGGGTCACCTCTGTACGCGTCTCCTGAAATCGTCAAAGGAACACCTTATATCGGGCCCGAGGTGGATTGCTGGTCTCTAGGCGTTCTCCTGTACACTCTAGTCTACGGAGCCATGCCGTTCGATGGCTCCAACTTCAAGCGGCTGGTCAGGCAAATCAGTAACGGAGACTATTACGAGCCCAGGAATCCTTCGAGTGCCTCGCCCTTAATCCGTGATATGCTCACGGTCGATCCTTTGAAACGTGCTGACATCGCCTACATATGTGATCATCCGTGGGTGAACACTGGCTGCGAGACGTCATGCCTGGAGATGGCTGAAGCGCTAGCCGCCGAAACTCCAGTGCGTTTGGATCTGCTGCTCTCGCTGGCTCCGGCTGCTCCTTCTAACTCCAACTCTGTTATGGTTCCGGCTGAGGCCGAAATGGGTCCGGAAGAGAGCTGCACCGACCTGACAAGCTCGACGTCGATGGCCCTAGAGCCCAGCAATTCCGCTGAAAAGAGAATCCTTGAATTGGTTGCAGAGGGCGGTGAAGACGCAATAAAACCATCGCCGACGAGAACAATAGTTTCTGCAGGGGAGAACAAACGGAAATTGGAGCTCGCCATGTCTGCTAGTGGACTACAGCGGAAGAAAGAGAGAGTGCCGAGCGCGGCAAGTATCGCGCCCCCCGGCGGCTCGGTGCCGGAGGAGAGCCCCGAGGCGCAGGACGCGGCCACCACGCCAACACCCCCCGACGAACCACCCCCACTCCTCGCTGACGAGTCGGTACAGCCATCGCTGAAGTCTTCGGCCACCATGACGATAACGCCCACACCAGTAGAGCTCGTAAAAGACCTGACCAAGGAGATCATCAGGGACGCTCCGAAAGACGAAGAGAAGGACAAGTCTGGGGCGAGGCCACGGGTCGTCATCAAGAAAAAACCTTCACCGACTAAAACGGTTGAAGAGAAACCCCCGCCGCCTGACACTGTTGAAGAGCTCAAGTTAGCGGAACAAGAGGAGCCGAAGTCAAACGCAGTAGCGTCGGCGGCCGACAAACTCACTTCTCTGAGCATCGCGCAGCAACCTGCGAACCAAGCTCCCGCTAAACCTAAGAAACTCTCAATACCAGGTGGAAATGTCGGTAACTTCAAGGAACAATTCGAGAAACGGGCGAATTCTGTATCAAAGCCAGTGGTATCGAAGATCGCCAAGCCCAAAGCTCAAAGTGAAGACCGCGAGCTTTCGAACAAAACTTCAGACAATGGCACTGTTCGACTGCAACAGATCGGAATTGAACCTGCACCGTCTCCGATCGAGCTGGAAATGAATCGGGGCGGCGTGAAGAAAACCGAGAGCGAACCGACACACGGCGCGGCCGCGGTCGACCCCTCCGTGCTCCTCAGCGACGCTAGACGAAGTCTCCAGAATTCCATGGCGAAGCTTGTGGAAGAGAAAACAGGAGAGGAGAGTCGTCGTCGGGCTGCGCGCGATATTATATCGTCCGCCATCCGCACAGGCAAGCCTCCGGTGCCTTACGGGCGCTCGTCGTCGGCGGGCGTGGCGTCGCTGGTGTCGCCGCCCGGCACCCCGCCCGCCGCCGCCGCCCCCGCGCGCCTCTTCCGCACCGAGGCGCACCACCAGGTCGAGGATCATCGCAACAGGTACTACACACGCCATACGCGGTATTTTTTTTAG
Protein
MVVGENKRTANIMDGIENTGDVRMHDHRLRLKQRFDIVRKLGQGTYGKVQLGINKKTGQEVAIKTIKKCKIESEADLIRIRREVQIMSSVRHPNIVHIYEVFENSEKMILVMEYCSGGELYDYLSQRKVLQEDEARRLFRQIATAVYYCHIHKICHRDLKLENVLLDDTGSAKIADFGLSNVFKETSLLSTFCGSPLYASPEIVKGTPYIGPEVDCWSLGVLLYTLVYGAMPFDGSNFKRLVRQISNGDYYEPRNPSSASPLIRDMLTVDPLKRADIAYICDHPWVNTGCETSCLEMAEALAAETPVRLDLLLSLAPAAPSNSNSVMVPAEAEMGPEESCTDLTSSTSMALEPSNSAEKRILELVAEGGEDAIKPSPTRTIVSAGENKRKLELAMSASGLQRKKERVPSAASIAPPGGSVPEESPEAQDAATTPTPPDEPPPLLADESVQPSLKSSATMTITPTPVELVKDLTKEIIRDAPKDEEKDKSGARPRVVIKKKPSPTKTVEEKPPPPDTVEELKLAEQEEPKSNAVASAADKLTSLSIAQQPANQAPAKPKKLSIPGGNVGNFKEQFEKRANSVSKPVVSKIAKPKAQSEDRELSNKTSDNGTVRLQQIGIEPAPSPIELEMNRGGVKKTESEPTHGAAAVDPSVLLSDARRSLQNSMAKLVEEKTGEESRRRAARDIISSAIRTGKPPVPYGRSSSAGVASLVSPPGTPPAAAAPARLFRTEAHHQVEDHRNRYYTRHTRYFF

Summary

Uniprot
H9J5C2   A0A2H1VQ17   A0A194PYA0   A0A212FCG7  
Pubmed
19121390    26354079    22118469   
EMBL
BABH01037046    BABH01037047    BABH01037048    ODYU01003750    SOQ42910.1    KQ459586    + More
KPI98003.1    AGBW02009191    OWR51436.1   
Proteomes
UP000005204    UP000053268    UP000007151   
PRIDE
H9J5C2   
Pfam
PF00069   Pkinase
Interpro
IPR017441   Protein_kinase_ATP_BS        + More
IPR008271   Ser/Thr_kinase_AS       
IPR011009   Kinase-like_dom_sf       
IPR000719   Prot_kinase_dom       
SUPFAM
SSF56112   SSF56112       
ProteinModelPortal
H9J5C2   A0A2H1VQ17   A0A194PYA0   A0A212FCG7  
PDB
6E4W     E-value=3.85533e-66,     Score=641

Ontologies

KEGG
101741298    no KO assigned | (RefSeq) treacle protein
GO
GO:0005524   GO:0004672   GO:0004674   GO:0006468   GO:0020037   GO:0006397   GO:0005737   GO:0048869   GO:0003676   GO:0016491   GO:0015930  

Topology

Length:
751
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.31246
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01637
outside
1  -  751
 
 

Population Genetic Test Statistics

Pi
253.308339
Theta
177.802505
Tajima's D
1.265802
CLR
0.438606
CSRT
0.729963501824909
Interpretation
Uncertain
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