SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13283  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA004688
Annotation
PREDICTED:_dipeptidyl_peptidase_3_isoform_X1_[Papilio_machaon]
Full name
Dipeptidyl peptidase 3      
Alternative Name
Dipeptidyl aminopeptidase III
Dipeptidyl peptidase III
Location in the cell
Cytoplasmic   Reliability : 2.895
 

Sequence

CDS
ATGGAAGACAAGTCAAATTTTTTACTGCCAAATAACCAAAGATTCGTGGAGTTGGATAGTTCGCAGGCTTTTGATAATCTAACAACGAATGAGAAATTATATGCTCATTATTTGAGTCAGGCTGCATGGAACGGTGGACTTATAGTATTGGTACAGACCAGTCCTGAGTCACCAAAGATATTCTCCTTGCTGCATAGAGTCTTTGTGGCTGAGCCATTAGAGAATCTTAAACAATCGGCTTTGAAATCTGGTGTATCTGAAGATGATTTTCAGGCTTTTCTCGTCTATGCAGGAGGTCTATTTGCCAACAGCGGTAACTATAAAGGTTTTGGTGATACAAAGTTCATTCCAAATTTACCAGCTGAATCATTAGAATTAATTTTAAAGGCATCTAAAGCATATGAAAATGACAATACGCACATACTAAAGTTATGGCAAAATACTAAAAATGCCATTTATGGGCTTGCACCCAGATTAACCAGTCTTGGTTTAGCTAATAAGGGGGTAACAACATATTTCTCAAGCAACTGTACCGAAGAAGATTCGAATCTCGTTAACGATTGGATGAAAACTAAACTCATAGAGGCGTACATTTGTCGTACGTTCAAAACTGTTGCTGATGACGGCTTACCCCTATACACCATTCATCTTGCCAGCGTCGAAACATCGTCAAAACCACCCCTAACGATGGATAAAGAATCGTACAAAGGCGCTTATTTCCAAGTGACACGCGGCGATTACTCACCCTTACTGAAGATTGTGAACGAACATCTAACCACAGCTCAGGAGTACGCAACAAATGATAATGAGAAGAACATGCTCTTGCATTATGTTAAAAGTTTTAAAGAAGGCGATCTTAGTGAGCATAAAGAGGGAAGCAGATTTTGGATAAGAGATAAGGGACCTATTATTGAGACATATCAAGGTTTCATTGAGACATATCGTGATCCAAGTGGTCAGCGGGGTGAGTTCGAGGGTTTCGTGGCGATGGTCAACAAGGAGATGTCCAAGAAGTTCGGCAGTCTCGTCGATGGCGCTGAGAGGTTCATTAAACTGTTGCCCTGGGGTGAAGACTTAGAAAAGGATTCGTTCCTGCGACCCGATTTCACGAGTCTGGACGTTCTAACGTTTTCCGGCAGTGGTATACCTGCGGGAATCAATATTCCTAATTATGACGAAATCCGTCAAAACGAAGGCTTCAAGAACGTGTCTCTGGGCAACGTGATCCCCGCCGCGTACAAGGAGTACACTATACCGTTCCTGTCTGATGCCGACAAGCAACTACTGGAGAAATACAGAGTTTCCGCCTTTGAGGTTCAAGTAGGACTTCACGAGCTATTAGGACACGGAAGCGGCAAGCTGTTGCGACAGAATGCAGATGGAACGTTCAATTTTGATAAAGAAAAAGTCAAAAACCCTCTGACTGATAAAGGTATAGAATCTTGGTACAGTGAAGGTGAGACCTACGACAGCAAGTTCACAACCCTGGGGTCCGCCTTCGAAGAGTGTCGCGCTGAAGCCGTCGGACTGTACCTCTCTTTGGTACCAGAGATACTTAAAATTTTCGGGTACGAAGGACAAGAAGCCGAAGACGTCACATACGTTAACTGGCTCAGCTTGTTGTGGAACGGAGCCGCTAAGGCGACCGAAATGTACCAACCCTCCACTAAGACTTGGTTGCAGGCGCACGCCCGCGCACGTTTCGTGATCATGCGTCTGTTGGAGCTGGAGGGGGGCGGCCTGCTCACCGTCGAGGAGTCCGAGCCCGGGAAGAATCTCCTGTTGACGCTACAAAAGGATCGTCTCGCTACCGACGGCAAGAAGATCATTGGCGATTTCTTGGTGAAACTTCAAACGATAAAGGCAACCGGTGACTTTAGTGCGGGCGAAAAACTATTCAATAAGTACAGCAGTCTCGACGAGCCCTGGGGCCGCTGGAGAGATATCGTTCTAATGCATAAACAGCCTAGAAACATCTTCGTTCAGCCCAACACCTTCCACAAGGGCGACGCGGTCGAGCTAAAGCGCTACCCGGCGACGGCTGAGGGCATGGTCGCGTCGTGGGTGGACAGGTTCCCCAACACGAAGGTCGACGACATTCTGGAGAAGTTAGCGAAAGAGAATAGCAAATATTTTGCTGATCTTGAACCTTTAACTGCTGCGTGA
Protein
MEDKSNFLLPNNQRFVELDSSQAFDNLTTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKIFSLLHRVFVAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYKGFGDTKFIPNLPAESLELILKASKAYENDNTHILKLWQNTKNAIYGLAPRLTSLGLANKGVTTYFSSNCTEEDSNLVNDWMKTKLIEAYICRTFKTVADDGLPLYTIHLASVETSSKPPLTMDKESYKGAYFQVTRGDYSPLLKIVNEHLTTAQEYATNDNEKNMLLHYVKSFKEGDLSEHKEGSRFWIRDKGPIIETYQGFIETYRDPSGQRGEFEGFVAMVNKEMSKKFGSLVDGAERFIKLLPWGEDLEKDSFLRPDFTSLDVLTFSGSGIPAGINIPNYDEIRQNEGFKNVSLGNVIPAAYKEYTIPFLSDADKQLLEKYRVSAFEVQVGLHELLGHGSGKLLRQNADGTFNFDKEKVKNPLTDKGIESWYSEGETYDSKFTTLGSAFEECRAEAVGLYLSLVPEILKIFGYEGQEAEDVTYVNWLSLLWNGAAKATEMYQPSTKTWLQAHARARFVIMRLLELEGGGLLTVEESEPGKNLLLTLQKDRLATDGKKIIGDFLVKLQTIKATGDFSAGEKLFNKYSSLDEPWGRWRDIVLMHKQPRNIFVQPNTFHKGDAVELKRYPATAEGMVASWVDRFPNTKVDDILEKLAKENSKYFADLEPLTAA

Summary

Description
Degrades neuropeptide proctolin (RYLPT) by cleavage between Tyr and Leu residues.
Catalytic Activity
Release of an N-terminal dipeptide from a peptide comprising four or more residues, with broad specificity. Also acts on dipeptidyl 2-naphthylamides.
Cofactor
Zn(2+)
Similarity
Belongs to the peptidase M49 family.
Keywords
Alternative splicing   Aminopeptidase   Cell membrane   Complete proteome   Cytoplasm   Hydrolase   Membrane   Metal-binding   Metalloprotease   Protease   Reference proteome   Transmembrane   Transmembrane helix   Zinc  
Feature
chain  Dipeptidyl peptidase 3
splice variant  In isoform 2.
EC Number
3.4.14.4
EMBL
BABH01037048    GDQN01007578    JAT83476.1    GDQN01011051    JAT80003.1    RSAL01000018    + More
RVE52815.1    KQ460883    KPJ11280.1    GAIX01014652    JAA77908.1    KQ459586    KPI98002.1    AGBW02012444    OWR45056.1    ODYU01000289    SOQ34783.1    GFDF01004341    JAV09743.1    KQ434809    KZC06472.1    CH477255    EAT45903.1    CH940650    EDW68087.2    KRF83636.1    KZ288379    PBC26583.1    GFDL01008786    JAV26259.1    NNAY01001059    OXU25304.1    AXCN02001582    CH933806    KRG01606.1    EDW15531.1    DS231898    EDS44623.1    KA644808    KA649140    AFP59437.1    AXCM01000899    KQ764717    OAD54432.1    GL444918    EFN60470.1    KK107078    EZA60250.1    APCN01005805    QOIP01000011    RLU16899.1    AAAB01008898    EAA09143.5    GL762111    EFZ22033.1    NEVH01006756    PNF36525.1    CM000160    KRK03177.1    KK853153    KDR10566.1    EDW96513.1    KQ981763    KYN36082.1    GGFJ01002590    MBW51731.1    CH916374    EDV91377.1    ADMH02001950    ETN60351.1    GBYB01012276    JAG82043.1    GAMC01010611    JAB95944.1    GAMC01010615    JAB95940.1    CM000070    EIM52651.1    GBYB01012300    JAG82067.1    EAL27893.3    CH479179    EDW24518.1    KQ978957    KYN27177.1    GAMC01010613    JAB95942.1    AE014297    AY051625    BT001283    BT001401    BT001402    BT001639    GBXI01009734    JAD04558.1    KQ983039    KYQ48086.1    CM000364    EDX13773.1    CH902617    EDV43155.1    CH954181    EDV49928.1    GBXI01011197    JAD03095.1    CH480815    EDW43036.1    KPU80103.1    CH964272    EDW84367.2    ADTU01016132    OUUW01000007    SPP82825.1    KQ976725    KYM76516.1    GEDC01014563    JAS22735.1    GEDC01019864    JAS17434.1    GAKP01020506    JAC38446.1    EZ422709    ADD18985.1    LBMM01003259    KMQ93737.1    GAKP01020504    JAC38448.1    GL888255    EGI63766.1    JXJN01015156    GEBQ01018794    JAT21183.1    GEBQ01030803    JAT09174.1    ATLV01019962    KE525286    KFB44745.1    CCAG010023021    CVRI01000064    CRL05541.1    CP012526    ALC46551.1    AJWK01004777    ALC46552.1    GL451634    EFN78866.1   
Pfam
PF03571   Peptidase_M49        + More
PF07047   OPA3
Interpro
IPR005317   Dipeptidyl-peptase3        + More
IPR039461   Peptidase_M49       
IPR010754   OPA3-like       
PDB
3FVY     E-value=0,     Score=1796

Ontologies

Topology

Subcellular location
Membrane  
Cell membrane  
Cytoplasm  
Length:
721
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0330100000000001
Exp number, first 60 AAs:
0.02989
Total prob of N-in:
0.00152
outside
1  -  721
 
 

Population Genetic Test Statistics

Pi
203.028203
Theta
172.156546
Tajima's D
0.545702
CLR
0.000844
CSRT
0.529873506324684
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 SNFLLPNNQR 100.00 1e-13
25044914 DKGPIIETYQGFIETYR 100.00 1e-10
28467696 DKGIEKDIAIAR 100.00 1e-10
25044914 GVTSTSPVR 95.65 5e-10
25044914 RYPATAEGMVASWVDR 100.00 3e-09
26822097 NMIIHYVK 100.00 3e-08
25044914 YPATAEGMVASWVDR 100.00 3e-08
28556443 ATEMYQPSTK 100.00 1e-07
25044914 DKFQVNIDVQHFSPEEISVK 100.00 7e-06
28556443 AYENDNTHILK 100.00 7e-06
28556443 GEFEGFVAMVNK 100.00 7e-06
25044914 RYIENPR 100.00 2e-05
28556443 FTTLGSAFEECR 100.00 3e-05
26822097 YPATAEGMVASWVDRFPNTK 100.00 1e-04
25044914 YPAGDTTEGWTR 100.00 1e-04
28556443 VFVAEPLENLK 100.00 1e-04
25044914 GPIIAPTIINVNVK 100.00 1e-04
26822097 YFADIEPITAA 100.00 0.001
26280517 GIEKPPFDIPDFIK 100.00 0.001
25044914 GIEPFYNQITK 100.00 0.001
28467696 GIENSATVISHVEPWAQGCGIINVEK 100.00 0.001
28556443 IIGDFLVK 100.00 0.004
26822097 IIEAYICR 100.00 0.028
26280517 QMQVQWNTK 100.00 0.028
25044914 QNADGTFNFDK 100.00 0.028
27102218 YSSIDEPWGR 100.00 0.028
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