SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13282
Pre Gene Modal
BGIBMGA004713
Annotation
PREDICTED:_rho_GTPase-activating_protein_39_[Bombyx_mori]
Location
Bomo_Chr22(-):12766817-12793746      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.503
 

Sequence

CDS
ATGTCTTCGGAGAGGGTAGAATGGGTGGAGATAATCGAGCCGAAGACAAAGGAGCATATGTATGCTAACCTCACCACTGGGGAATGCGTCTGGGACCCACCTGAGGGAGTGAAAGTGAAACGCACCGACTCATCACAGTGGTGGGAGCTCTTTGACATCAATACACATAGATTTTATTACTATAATGCTTCAACACAGACAACTGTGTGGCATAGGCCAACTGATTGTGACATAATACCATTGGCGAAGCTTCAAACATTGAAACAAAACACGGACCCACAGAAAAGGCGAGAAACATCTACACAAACAACCCAATCTGCCCCACAGACGTCGTTGATAGAACCTACAAGCAGCAATGGAAACAGTACATCGGCAACCGCCAGCAAACTTTCACCTGGAAACCTGAAGATTGTTACACAGACGAGTCCCGTAAGGACGAGGCGAACTCATTACCATCATAGGAATAGCGGTGAAAGCAGGCGTGGTAGGTTAAGTGAAGATGGTACGAGCCAAATATGCCGGCACACTGACTCCGGTCGGTCTTCCGACAGCAGCATCAGCAGTGCACAGCAGAGACGGAAACAGGAACTAAATGCGGCTGCCTGCAATCCTCCGATATGCACACCACAGTTAAGAAAACGTAGCAGCGCGACACCTGCTCACGAACCAGAGAAGTGGTCGCAACATTCAGGTCTGAACAGAAGCGGCAGTTTTATATCGCCCCGTAAAGACGCGTCAGACGACTCGATGCACGAGAAATATTTCAAGTCAGTCGAGAGCACACCGTTGACGAGACGAAAGTTGAAACAACAATCCGGTGGCGGCTCGTCATGTGATTCTGCGTCTCCTCAGAGCCCCAGCAGTCCATTGCAGAAACCACAGCCTACGCCATTTTTGCAGACAACATCGGCTCGCCCCTCCCTGGTGTCGTCGATATCGCTGGCGACGGAGGCGGCGGGCGGCGCGTCGCGCGTACTGCACAGCCTGGAGCGGCCGCACCATCTGTCGCGACACTCCAGGGAGCGGTACTCTGATAGACATTTAGACAAGGATCGTTTGGCGGAACTGGAACGGATGGACCGCTATCCTGAGAAACAGGCCGTCTACAGCGTCGACAAACCCTTCAGACAAACCAGCTTAGATCTGCGGCACAATCCAGCGGCCAATTGGAATCCTTCAAGGGAGTTCACCAGACGCCAACAAGCCGAACCCGAGCGCTACACTTCCAGCAAGACATCGGTCTCGTCTGGCGGCAGCAGCAAGCATCGCTCGCATGAACCCCATCATAACTACATGAGGCTATCGTCCGCTAATGAACAGGACAATATTGCAGCAGTAAACTACAAAATGAAATGCGTAAGTCTAGAGCCGCCGCTGACAGAGCCTAACGTTCAGAAACACAATCAGAGAATGGAGAGAACCTCAACGCCTAGTTCGAAACGAACAAAAACGAGGCGGCATAAGCGACCAGTGGAAGTCGAAGAGCCAGGACTTGATGGTGAAGATGAGGAAGACGAGGGTGGCTCGCCCCTCTATTGCAACTGGGATCTACGAGGAATGCAGCATTTATTGCCTCTACAAGATTATATCATACAACAGGCTAAATTATCTAGTAGAGGACGTTATGGTGGATCCGGATCGGACAACGAATCGAACTCGTCTCGTTCACGGTCCGGTTCGGAATCGCGTTCTCTGTCCGGCCACGAACCGGACAACGAGTCTTCGGACGGTGGCGCCCGTACTCCGGACGACGACGACGGTTCCGGCGTGTACCTACCGCACACGTACGCACATCGACCTGCCGACGTAGAGTATATGAACCATGGAGTCTCTTATTATAATACGTTTGTCGGGTTTGATAGAGACCGACAGACGTCACCTGGTATACATAGGACGTCATCGCTAGGAGGCGGTGCTACAGTCCCGGTGGACCCACCGGCCGGGGCGCCCGCACTCTACAGTCCGGTGCGGGCGCATCCACACCCGCGCCCGTCGGTCCCGCCCGAACAAGACATCGAGATATTCGCCAAAGACAACTTAAATTTCAACAAAGGCATATTTAGAAGGAAGGCTTCTGTCCGCGATATGTTATCGTGGACCTCGTCGTCAATTAGCGCTCCTATGGTGGGCGCCGACTGGGACAAAGCGCACAAGAAGGCAGCCATAGACCTGTTCAGGCTCGTGCAGATCTACATGGGCGACAGGAAGGCCAGGCCGGGGATGACACTCAACTCTGTAGCTCAAGACATCCTGCACGCTACTTTTGCTAATGAAAAACTCCGCGACGAGCTCTACGTGCAGCTATGCAGACAGACAACGGAGAATCCACTACGCGATTCATTGCTGCGCGGCTGGGAGCTGTTGGCGGTGTGCTTGGCTTTCGTTCCGCCATCGCCTGCGTTTCAACCCGCCCTCACCAATTACGTCAACAGGCATCGAGACCCAGCGTTTGCCGATGCTTTTCCTGAGGTGGGCAAATGGCCCATTCACGTTCAAGTATCACACTATGCCGGCGTTGCCTGTAAGAGATTGGAGAGAATCAGTTTCGCAGGAAAAAGGCAGCCAAGGAAACCGACGACAGAAGATATTGATCAGGCCAGAATACAAATATTTCGTCAGTCGATGTTCGGAAACACCCTATCAGAGGTGATGACGTTACAAAAAGAAAGGTTCCCTAATAGACAACTTCCCTGGGTTCAAGTGGCCCTGTCCCAGCAAGTTCTATCGTTAAACGGCAGAGAGACCGAGGGCATATTCAGAGTCTCCGCGGATGTCGATGAAGTCAACGCTTTGAAGGCGAAGATCGATAATTGGGAACTGCCTGACGCCTCTACTCTTACAGACGCACATGCCCCGGCTAGCTTATTAAAGCTTTGGTACAGAGAATTGTATGAGCCTTTGATCCCGGACGTGCTGTACGGCTCGTGCGTCGCCGCCGGGACTGACTTTATAGCGTGCACGAGAGTTCTACATCGATTGCCGCCTTTGAACCGACTAGTACTAACCTACCTCATAAGTTTCCTACAGCAGTTTACCGCCCCCGAAGTGGTCAGTCAAACAAAAATGGATTCAGCTAATTTGGCCATGGTGTTCGCGCCCAACTGTCTCAGGTGCACGTCGCAGGACCCGAGAGTGATCTTAGAGAACGCACGAAAAGAGATGACCTTCCTCAAAACCCTGATCACGAACTTGGACACGTCACACGTACAGGACATGCTGTGA
Protein
MSSERVEWVEIIEPKTKEHMYANLTTGECVWDPPEGVKVKRTDSSQWWELFDINTHRFYYYNASTQTTVWHRPTDCDIIPLAKLQTLKQNTDPQKRRETSTQTTQSAPQTSLIEPTSSNGNSTSATASKLSPGNLKIVTQTSPVRTRRTHYHHRNSGESRRGRLSEDGTSQICRHTDSGRSSDSSISSAQQRRKQELNAAACNPPICTPQLRKRSSATPAHEPEKWSQHSGLNRSGSFISPRKDASDDSMHEKYFKSVESTPLTRRKLKQQSGGGSSCDSASPQSPSSPLQKPQPTPFLQTTSARPSLVSSISLATEAAGGASRVLHSLERPHHLSRHSRERYSDRHLDKDRLAELERMDRYPEKQAVYSVDKPFRQTSLDLRHNPAANWNPSREFTRRQQAEPERYTSSKTSVSSGGSSKHRSHEPHHNYMRLSSANEQDNIAAVNYKMKCVSLEPPLTEPNVQKHNQRMERTSTPSSKRTKTRRHKRPVEVEEPGLDGEDEEDEGGSPLYCNWDLRGMQHLLPLQDYIIQQAKLSSRGRYGGSGSDNESNSSRSRSGSESRSLSGHEPDNESSDGGARTPDDDDGSGVYLPHTYAHRPADVEYMNHGVSYYNTFVGFDRDRQTSPGIHRTSSLGGGATVPVDPPAGAPALYSPVRAHPHPRPSVPPEQDIEIFAKDNLNFNKGIFRRKASVRDMLSWTSSSISAPMVGADWDKAHKKAAIDLFRLVQIYMGDRKARPGMTLNSVAQDILHATFANEKLRDELYVQLCRQTTENPLRDSLLRGWELLAVCLAFVPPSPAFQPALTNYVNRHRDPAFADAFPEVGKWPIHVQVSHYAGVACKRLERISFAGKRQPRKPTTEDIDQARIQIFRQSMFGNTLSEVMTLQKERFPNRQLPWVQVALSQQVLSLNGRETEGIFRVSADVDEVNALKAKIDNWELPDASTLTDAHAPASLLKLWYRELYEPLIPDVLYGSCVAAGTDFIACTRVLHRLPPLNRLVLTYLISFLQQFTAPEVVSQTKMDSANLAMVFAPNCLRCTSQDPRVILENARKEMTFLKTLITNLDTSHVQDML

Summary

Uniprot
A0A194R5Y9   A0A194PXC8   A0A3S2P5D4   H9J5C3   A0A212FCD1  
Pubmed
26354079    19121390    22118469   
EMBL
KQ460883    KPJ11281.1    KQ459586    KPI98001.1    RSAL01000018    RVE52817.1    + More
BABH01037048    BABH01037049    BABH01037050    AGBW02009203    OWR51390.1   
Proteomes
UP000053240    UP000053268    UP000283053    UP000005204    UP000007151   
PRIDE
H9J5C3   
Pfam
PF00620   RhoGAP        + More
PF00784   MyTH4
Interpro
IPR000857   MyTH4_dom        + More
IPR008936   Rho_GTPase_activation_prot       
IPR038185   MyTH4_dom_sf       
IPR000198   RhoGAP_dom       
IPR036020   WW_dom_sf       
IPR001202   WW_dom       
SUPFAM
SSF48350   SSF48350        + More
SSF51045   SSF51045       
Gene 3D
1.10.555.10     1.25.40.530    
CDD
cd00201  WW
ProteinModelPortal
A0A194R5Y9   A0A194PXC8   A0A3S2P5D4   H9J5C3   A0A212FCD1  
PDB
6R3V     E-value=1.35871e-11,     Score=172

Ontologies

KEGG
101741434    K20649 Rho GTPase-activating protein 39 | (RefSeq) rho GTPase-activating protein 39
GO
GO:0007165   GO:0005856   GO:0005515   GO:0020037   GO:0006397   GO:0005737   GO:0048869   GO:0003676   GO:0016491   GO:0015930  

Topology

Length:
1073
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.03186
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00001
outside
1  -  1073
 
 

Population Genetic Test Statistics

Pi
331.892773
Theta
173.552291
Tajima's D
2.356501
CLR
0.33175
CSRT
0.929703514824259
Interpretation
Uncertain
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