SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13277
Annotation
PREDICTED:_uncharacterized_protein_LOC105842541_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.842
 

Sequence

CDS
ATGAGCCAACATTCTGAGGATTTAGATACTCTTATTAAGCGACGAGGTGCAATTAAAGCCAAACTTACTATTTTCAGAAATTATATTAAACCTCTTAGTAGTTTTTCTAGCTTGACCGACTTACAACGTTTTGAGTTGGAAGGACGTTATGAGCGTATTCAGTGTTTATACAACGACTTCGACAAGTTACAGACGGAGATCGAGACGTTGTTGGACGCACCCGATGACGACTTTAAATCCCGGTGTGAGTTCGAGGACCAATACCATCCTACGGTGGCACTGGCGCGAAGCCTGCTTTCAGCAACTACCAACTCAGAAGGTTCAGCTATGGTGAGAGTGCGTGGTGCCGATGGCACTAAGCACCCCGCCCGAGTTTTGCTGGACAACGGTAGTACCGCCAACTTTGTCACAGACGCCTTTTCATCCAAGCTTGGGCTGTCACGACACGGTACTAGCTCCACTACAATCACCGGTATAAACAATCAGACCTCTTATAGTACACAGTCTTGTAATCTCACGCTCGAGTCCTATTACGCTGAAGATACCTAG
Protein
MSQHSEDLDTLIKRRGAIKAKLTIFRNYIKPLSSFSSLTDLQRFELEGRYERIQCLYNDFDKLQTEIETLLDAPDDDFKSRCEFEDQYHPTVALARSLLSATTNSEGSAMVRVRGADGTKHPARVLLDNGSTANFVTDAFSSKLGLSRHGTSSTTITGINNQTSYSTQSCNLTLESYYAEDT

Summary

Pfam
PF05585   DUF1758        + More
PF05380   Peptidase_A17
PF03564   DUF1759
PF00665   rve
PF18701   DUF5641
Interpro
IPR008737   Peptidase_asp_put        + More
IPR005312   DUF1759       
IPR008042   Retrotrans_Pao       
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR040676   DUF5641       
IPR036397   RNaseH_sf       
SUPFAM
SSF53098   SSF53098       
Gene 3D

Ontologies

Topology

Length:
182
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00490999999999999
Exp number, first 60 AAs:
0.00436
Total prob of N-in:
0.10402
outside
1  -  182
 
 

Population Genetic Test Statistics

Pi
289.122936
Theta
159.601533
Tajima's D
2.519215
CLR
0.475937
CSRT
0.946502674866257
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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