Gene

KWMTBOMO13268

Annotation

PREDICTED:_mucin-2-like_[Amyelois_transitella]

Location

Bomo_Chr22(-):12031787-12034959      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from transposon TNT 1-94      

Location in the cell

Nuclear   Reliability : 3.505

CDS

ATGGCTACCAACTACCTTATCAATGTGCCGAAACTAAAAGGACGCGATAATTATTCAGAGTGGTGTTTCGCTGCAGAAAATTTTTTAGTACTCGAAGGCATGAAGCATTGCATCAAGCCAGAACCGGGGAAAGAAATAGCAAGCGCGGATGACGAAAAAACTAAAGCCAAATTGATCATGACCATCGACCCGTCGTTGTACGTACATGTCAAAACCGTTAAATCGTCGAAAGAATTGTGGGATAAACTAAGGCAATTATTCGATGATAGTGGCTTTTCACGAAGAATTAGTCTATTGAGAAATTTAATTTCAATCCGGCGAGATAATTGCAGTTCGATGACGTCATACGTGACGCAGATAATCGATACAGCGCAGAAATTAAGTGGAACGGGATTTGAAATAAACGAGGAATGGGTGGGATCATTGCTGTTGGCGGGGCTGCCAGAAAAGTTTGCCCCAATGATCATGGCAATTGAACATTCCGGGATTGCCATAAACTCTGATGTAATTAAAACAAAATTACTTGATATGAGTTCCGAGATCGGTGACCATGATCCGGAAGTTGCACTATGGTCGAAACCAAAAACGAGGGTAGATCAAAATTTCAATACAAAAGGCGAGAAACGAACATCAAATACGTCAAATGTAAAAAAAAAGGTTATAAAATGCTATAAATGTAAGCAAAATGGTCATTATAAAAATCAGTGTCCGAGTTTAGAAGCCGAAAAAAGAAAACAATCCAACGCCTTTAGTGCTATTTTCTTAAGTGGAAATTTCAACTGCGATAGTTGGTACATAGATAGCGGGGCCAGCAAACACATGACAGCAAAGAAAGAATACGTTGAGAGTCCATCATTTGAACATGAAATTAAAGAAATAATTGTTGCGAACAAAACATCCGTCCCGGTAGTGTGTTCTGGTGATGTAAACATAATCACAGTTGTGAATGGTGTAGAATATGACATCACAGTTTCAAATGTATTGTGCATACCGAGTTTAACAACAAACTTGCTTTCAGTGAGTCAGTTAATTGAGAATGGCAATAAGGTAATCTTTAAAGAGAAATTTTGCTATATTTACAATCAACAGAGAACTCTAGTTGGAAAGGCAGAATTAGTAGATGGTGTGTACAGATTATATACTAAGAAATCAGAACAGTTATTCGCAGCCACAGCTAAGGTGTCGAGTGAAACTTGGCATCGACGATTAGGGCATATCAACAGTACCAGCTTGAACAAAATGAAGAATGGAGCTACGACAGGTATTTCATACACAAATAAAGCTGATGTTGACAAATCTAAGTGTACTGTTTGCTGTAAGGGGAAGCAGGCTAGACTACCTTTTCAGCCTAGTTCAACTAGCACCCAAGATATTTTAGAATTGATACACTCAGATGTGTGTGGTCCGATGGAAAATGTGTCTATTGGAGGTTCCAGATACTATGTCTTATTTGTGGATGACTACAGCAGAATGGTTTTTGTATACTTCATGAAAACAAAGTCAGAGGTATTTAAGTTTTTCAAAGAATTCCAGTCACTTGTAGAAAAACAGACAGATCGGAAAATTAAAATTCTAAGAACAGACAATGGCGGTGAGTACTGCAGTCAAGACTTTGAAAGATATCTAAAACAACACGGAATAATTCACCAGAAAAGTAATGCTTACACACCACAGCAAAATGGTGTGTGTGAAAGGATGAATAGGTCATTAGTTGAAAAGGCTAGATGTCTAATTTTTGATGCTGGTTTACATAAAAAGTTTTGGGCAGAAGCCATAAATACCTCTGTATACTTAAGGAATCGATCAGTTGTTACTGGATTAAACAACATGACTCCATATGAAGCCTGGACAAAGAAAAAACCTGACTTAAGTCATGTACGTATTTTTGGAAGTAAGGTTATGATGCACATACCAAAAGAAAAGCGCTTAAAATGGGATATGAAGGCTAAAGAACTTATTTTGGTAGGCTATGCAGACAATGTAAAAGGCTATAGGGTTTATAACCCAGAAAATAACTCTGTCACAACTAGCAGAGACATTATAATAATGGAGAAAACTGAAAATACAATTGAAATTCCTATTGAGTGCAAGGCTCCAGCGGAGGAACAGAGAGAAGGAGACGAAAGTAGAACTACAGAAAGTACAGACACTGAATGTGATGATAATGATATCACATATATTCCAGAAGCTTCTTCAGGAAGTGACTCATATGACAGTTTTTCTGAAACACCATCAGAACCAGAACCTTCATTATTAGAATTGAATCAGGATATTCCAAACAAGCGAGTGAGAAAAATACCTGATAGATTTAGCTATAGTCACTTATGTATTGCAGAATCAGATGATCAAAATATAATGGATATTTCACTCAAGGAAGCTTTAAATGGACCTGAAAGTAAATTTTGGAGATCAAGCATGGAGGAGGAATTAGAATCATTTAAGAAAAATGATGCATGGGAACTTGTGGATAAGCCTCGTGACTCTACAGTAGTGCAGTGCAAATGGGTATTTAAAAAGAAGTATGATAGTGTCGGTAATGTGCGTTATCGTGCTAGATTAGTGGCAAAAGGCTTTTCACAGAAAGCTGGCATAGACTATCATGAAACTTTTTCACCTGTGCTACGTTATACTACTTTAAGATTGTTATTTTCTATAGCAGTAAAACTAGGTTTAGATATACGTCATCTTGATGTCACTACAGCCTTTCTAAATGGTTTTTTGAATGAATCTGTGTATATGCAAAAACCTGTCCTTTATAGAGATTGTAATGATAATGATAACAAAGTATTAAAGCTTAAACGTGCCATATATGGACTTAAGCAATCATCTCGTGCTTGGTATCAGAGAGTTAATGATTACTTAGAGTCTTTAGGATATTTAAAATCTAATTAA

Protein

MATNYLINVPKLKGRDNYSEWCFAAENFLVLEGMKHCIKPEPGKEIASADDEKTKAKLIMTIDPSLYVHVKTVKSSKELWDKLRQLFDDSGFSRRISLLRNLISIRRDNCSSMTSYVTQIIDTAQKLSGTGFEINEEWVGSLLLAGLPEKFAPMIMAIEHSGIAINSDVIKTKLLDMSSEIGDHDPEVALWSKPKTRVDQNFNTKGEKRTSNTSNVKKKVIKCYKCKQNGHYKNQCPSLEAEKRKQSNAFSAIFLSGNFNCDSWYIDSGASKHMTAKKEYVESPSFEHEIKEIIVANKTSVPVVCSGDVNIITVVNGVEYDITVSNVLCIPSLTTNLLSVSQLIENGNKVIFKEKFCYIYNQQRTLVGKAELVDGVYRLYTKKSEQLFAATAKVSSETWHRRLGHINSTSLNKMKNGATTGISYTNKADVDKSKCTVCCKGKQARLPFQPSSTSTQDILELIHSDVCGPMENVSIGGSRYYVLFVDDYSRMVFVYFMKTKSEVFKFFKEFQSLVEKQTDRKIKILRTDNGGEYCSQDFERYLKQHGIIHQKSNAYTPQQNGVCERMNRSLVEKARCLIFDAGLHKKFWAEAINTSVYLRNRSVVTGLNNMTPYEAWTKKKPDLSHVRIFGSKVMMHIPKEKRLKWDMKAKELILVGYADNVKGYRVYNPENNSVTTSRDIIIMEKTENTIEIPIECKAPAEEQREGDESRTTESTDTECDDNDITYIPEASSGSDSYDSFSETPSEPEPSLLELNQDIPNKRVRKIPDRFSYSHLCIAESDDQNIMDISLKEALNGPESKFWRSSMEEELESFKKNDAWELVDKPRDSTVVQCKWVFKKKYDSVGNVRYRARLVAKGFSQKAGIDYHETFSPVLRYTTLRLLFSIAVKLGLDIRHLDVTTAFLNGFLNESVYMQKPVLYRDCNDNDNKVLKLKRAIYGLKQSSRAWYQRVNDYLESLGYLKSN

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Keywords

Aspartyl protease   Complete proteome   Endonuclease   Hydrolase   Metal-binding   Nuclease   Nucleotidyltransferase   Protease   Reference proteome   RNA-directed DNA polymerase   Transferase   Transposable element   Zinc   Zinc-finger  

Feature

chain  Retrovirus-related Pol polyprotein from transposon TNT 1-94

Uniprot

A0A212F7V4   A0A1Y1N932   A0A2A4J959   A0A1Y1N668   A0A1Y1N6L8   A0A194RU38   + More
A0A0A1WXQ3   A0A0A9WPH5   A0A0A9WRE3   A0A085MVP5   A0A2A4JRI1   A0A2J7Q1Z2   A0A085N572   A0A2J7RKJ6   A0A2J7R668   A0A2J7R8S8   A0A0J7NHJ8   A0A182GZK6   A0A1Y1LWI3   A0A0K8U6S2   W4VRQ4   A0A1Y1LYU4   A0A1W7R670   A0A1W7R663   A0A224XA26   A0A085MSF4   A0A0J7K6W1   A0A0A9XVJ9   A0A0V0RWJ3   A0A0K8U956   A0A0A9XEY5   W4VRP9   W4VRP2   K7J8U2   A0A085N9K0   A0A085NQR3   A0A1W7R6J6   A0A1W7R6K6   A0A251T6N3   A0A0V1GTY0   A0A2M4CV35   A0A2M3YZL7   A0A0N5DDW3   A0A2M3YZL3   A0A151T355   P10978   A0A0V1MGJ0   A0A0A1WFC7   A0A0K8U8C3   B8YLY7   A0A3S3NIE3   A0A224X581   A0A0V1FKH2   A0A0V1APS7   A0A0K8U6X2   A0A0K8WJW9   A0A151THM1   A0A0V1K1Y9   A0A0V1F2E6   A0A0V0T3I0   Q5MG99   A0A0N1ICY1   A0A1B6E9D0   A0A2N9IWX1   A0A0V0TUP0   A0A0A9YFM0   Q9ZRJ0   A0A085MV21   A0A0N1IFR1   A0A0A9WQD4   A0A0V0WQU6   A0A146LFV8   A0A0V0Z6Q0   A0A1Y3E9R1   W8APZ4   W8AEF0   A0A0A1XLZ7   W8AL23  

Pubmed

22118469    28004739    26354079    25830018    25401762    24929829    + More
26483478    20075255    28538728    22057054    2536143    19656907    8624443    26823975    24495485   

EMBL

AGBW02009826    OWR49812.1    GEZM01011857    JAV93390.1    NWSH01002292    PCG68657.1    + More
PCG68658.1    GEZM01011856    JAV93393.1    GEZM01011858    GEZM01011854    JAV93389.1    KQ459875    KPJ19636.1    GBXI01011094    JAD03198.1    GBHO01033237    JAG10367.1    GBHO01033235    JAG10369.1    KL367628    KFD61291.1    NWSH01000816    PCG74073.1    NEVH01019375    PNF22597.1    KL367553    KFD64618.1    NEVH01002725    PNF41351.1    NEVH01006980    PNF36330.1    NEVH01006721    PNF37230.1    LBMM01004924    KMQ91985.1    JXUM01099713    KQ564513    KXJ72145.1    GEZM01045162    JAV77889.1    GDHF01030254    JAI22060.1    GANO01000510    JAB59361.1    GEZM01045163    JAV77888.1    GEHC01000989    JAV46656.1    GEHC01000988    JAV46657.1    GFTR01008662    JAW07764.1    KL367691    KFD60150.1    LBMM01012645    KMQ86082.1    GBHO01020706    JAG22898.1    JYDL01000068    KRX18751.1    GDHF01029191    JAI23123.1    GBHO01026221    JAG17383.1    GANO01000659    JAB59212.1    GANO01000660    JAB59211.1    AAZX01000499    KL367527    KFD66146.1    KL367480    KFD71809.1    GEHC01000868    JAV46777.1    GEHC01000867    JAV46778.1    CM007900    OTG06758.1    JYDP01000258    KRZ01816.1    GGFL01004951    MBW69129.1    GGFM01000952    MBW21703.1    GGFM01000953    MBW21704.1    CM003610    KYP61490.1    X13777    JYDO01000104    KRZ71003.1    GBXI01017107    JAC97184.1    GDHF01029405    JAI22909.1    FJ544857    ACL97387.1    NCKU01012701    RWS00004.1    GFTR01008771    JAW07655.1    JYDT01000069    KRY86576.1    JYDH01000330    KRY26802.1    GDHF01029905    JAI22409.1    GDHF01000873    JAI51441.1    CM003608    KYP66486.1    JYDS01000009    JYDV01000021    KRZ33483.1    KRZ41218.1    JYDR01000001    KRY80095.1    JYDJ01000808    KRX33413.1    AY830138    AAV88069.1    KQ460882    KPJ11482.1    GEDC01002834    JAS34464.1    OIVN01006239    SPD28653.1    JYDJ01000136    KRX42725.1    GBHO01011746    GBHO01011744    GBHO01011742    JAG31858.1    JAG31860.1    JAG31862.1    D83003    BAA11674.1    KL367637    KFD61067.1    KQ460208    KPJ16606.1    GBHO01036544    JAG07060.1    JYDK01000071    KRX78123.1    GDHC01012180    JAQ06449.1    JYDQ01000379    KRY07987.1    LVZM01023578    OUC39908.1    GAMC01019997    JAB86558.1    GAMC01019995    JAB86560.1    GBXI01002679    JAD11613.1    GAMC01019998    JAB86557.1   

Proteomes

UP000007151    UP000218220    UP000053240    UP000235965    UP000036403    UP000069940    + More
UP000249989    UP000054630    UP000002358    UP000215914    UP000055024    UP000046395    UP000075243    UP000084051    UP000054843    UP000285301    UP000054995    UP000054776    UP000054805    UP000054826    UP000054632    UP000055048    UP000054673    UP000054783    UP000243006   

Pfam

PF13976   gag_pre-integrs        + More
PF00098   zf-CCHC
PF00665   rve
PF07727   RVT_2
PF13961   DUF4219
PF04500   FLYWCH
PF05380   Peptidase_A17
PF00078   RVT_1
PF05585   DUF1758

Interpro

IPR025724   GAG-pre-integrase_dom        + More
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR039537   Retrotran_Ty1/copia-like       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR013103   RVT_2       
IPR025314   DUF4219       
IPR007588   Znf_FLYWCH       
IPR008042   Retrotrans_Pao       
IPR000477   RT_dom       
IPR008737   Peptidase_asp_put       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       

Gene 3D

3.30.420.10    

ProteinModelPortal

A0A212F7V4   A0A1Y1N932   A0A2A4J959   A0A1Y1N668   A0A1Y1N6L8   A0A194RU38   + More
A0A0A1WXQ3   A0A0A9WPH5   A0A0A9WRE3   A0A085MVP5   A0A2A4JRI1   A0A2J7Q1Z2   A0A085N572   A0A2J7RKJ6   A0A2J7R668   A0A2J7R8S8   A0A0J7NHJ8   A0A182GZK6   A0A1Y1LWI3   A0A0K8U6S2   W4VRQ4   A0A1Y1LYU4   A0A1W7R670   A0A1W7R663   A0A224XA26   A0A085MSF4   A0A0J7K6W1   A0A0A9XVJ9   A0A0V0RWJ3   A0A0K8U956   A0A0A9XEY5   W4VRP9   W4VRP2   K7J8U2   A0A085N9K0   A0A085NQR3   A0A1W7R6J6   A0A1W7R6K6   A0A251T6N3   A0A0V1GTY0   A0A2M4CV35   A0A2M3YZL7   A0A0N5DDW3   A0A2M3YZL3   A0A151T355   P10978   A0A0V1MGJ0   A0A0A1WFC7   A0A0K8U8C3   B8YLY7   A0A3S3NIE3   A0A224X581   A0A0V1FKH2   A0A0V1APS7   A0A0K8U6X2   A0A0K8WJW9   A0A151THM1   A0A0V1K1Y9   A0A0V1F2E6   A0A0V0T3I0   Q5MG99   A0A0N1ICY1   A0A1B6E9D0   A0A2N9IWX1   A0A0V0TUP0   A0A0A9YFM0   Q9ZRJ0   A0A085MV21   A0A0N1IFR1   A0A0A9WQD4   A0A0V0WQU6   A0A146LFV8   A0A0V0Z6Q0   A0A1Y3E9R1   W8APZ4   W8AEF0   A0A0A1XLZ7   W8AL23  

PDB

4NYF     E-value=0.0282376,     Score=91

KEGG

NA   

GO

GO:0015074   GO:0000943   GO:0003676   GO:0008270   GO:0003964   GO:0004190   GO:0004519   GO:0005634   GO:0006397   GO:0005737   GO:0048869   GO:0016491   GO:0015930  

PANTHER

PTHR11439  

Length:

963

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01274

Exp number, first 60 AAs:

0.00036

Total prob of N-in:

0.00018

outside

1  -  963

 

 

Pi

274.206247

Theta

122.109743

Tajima's D

-0.693913

CLR

11.348941

CSRT

0.19954002299885

Interpretation

Uncertain