Gene

KWMTBOMO13267

Pre Gene Modal

BGIBMGA004733

Annotation

PREDICTED:_polypyrimidine_tract-binding_protein_2_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr22(-):11940653-12001369      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.136 Nuclear   Reliability : 1.696

CDS

ATGAAAACTAAGAGAGGCTCCGACGAGCTTCTTTCGCAGAGTGGCGTCACCGTCATGGCGCCCGCCGCTCCGCACCATGCCGACAATAACAATCAGGACTCTGCTGCCAAGAAGGTGAAACTGGAACAAAATGTCGGCAAGCCGTCTCGAGTCATTCACATACGGAACATACCGAACGAGACGACGGAAGCGGAGATCATACAACTCGGATTGCCCTTCGGAAGAGTCACCAACGTTCTAGTGCTCAAAGGCAAAAATCAGGCGTTCCTTGAAATGGCAGAGGAGATATCTGCGGTGGCTATGGTCGCATACTTCGGAGGATGTGTAGCGCAGTTGCGTGGCCGAGCGGTTTACGTTCAGTTCTCCAACCACAAGGAGCTAAAAACCGATCAGACGCACAGCAATGCCTCAGCATCGGCGCAAGCGGCTTTACAGGCGGCACAAGTCATATCGAATAGCGCTGGTGCGGCCATTGTTGCGGGCGGCGGTAACGCTTTGCAACCAGCTAATGGCGGTACAGAAATACAGGGCGGTCCCAATACAGTACTGCGTGTCATCATAGAGCATATGTTATATCCCATCGTTCTGGACGTCCTCTACTCGATCTTCCAACGCTACGGCAAGGTGCTCAAGATTGTAACTTTCACTAAAAACAATTCATTCCAAGCTCTCATTCAGTATCCAGACACGGTGTCGGCGCAAACAGCAAAAACGGCGCTCGACGGGCAGAATATCTACAACGGGTGCTGCACACTCCGCATCGACTATTCGAAGATGACTTGCCTGAACGTGAAATACAACAATGACAAGTCGCGGGACTACACGAATCCGACGCTTCCCTCCGGAGACGGCGACGCTCATCAGCTGTTGACCAGCGGAGGTGTATTGGCGCCTCAGTTCCTGGGCTTGGGTTCGGGATTGGCTTCGCCGTATGGTGTGGGTGTCGGTGGAGTGGGGCTCCCAGCCTTCGGAGCTCTCACTCTCACACCGGCCTCGCCCGCTCTGCGAGCCCTTGCTGCGCCACCTTTACCATTAGCCACAGTCCTACTGGTGTCTAACCTGAACGAAGAGATGGTCACGCCTGACGCTCTCTTTACCCTTTTCGGCGTGTATGGTGACGTGCAACGGGTGAAGATACTTTACAACAAGAAGGATTCGGCTTTGATTCAGATGGCAGAACCGCACCAGGCCCATCTAGCCCTGACCCACATGGACAAGTTACGCGTGTTCGGCAAGGCGATGCGCGTTATGCTAAGTAAGCACCAGACTGTTCAGCTCCCTAAAGAAGGACAACCTGACGCTGGTCTTACCAGGGACTACTCGCAGAGCCCACTCCACAGATTCAAGAAACCTGGTAGCAAAAATTACCAGAACATCTACCCGCCAAGCGCCACTCTGCATCTGTCGAACATTCCAGCCACCGTGACTGAAGAGGATATCAAAGATGCATTCTCCAAACGGGGATTCACAATTAAGGCTTTTAAATTTTTCCCGAAGGACCGCAAAATGGCTCTGGTCCAACTGTCGTCCATCGACGACGCAGTGACCGCGCTCATCAAGATGCACAACTACCAGCTCTCGGAATCCAATCACCTCAGGGTGTCTTTCTCCAAATCAAGCATCTAA

Protein

MKTKRGSDELLSQSGVTVMAPAAPHHADNNNQDSAAKKVKLEQNVGKPSRVIHIRNIPNETTEAEIIQLGLPFGRVTNVLVLKGKNQAFLEMAEEISAVAMVAYFGGCVAQLRGRAVYVQFSNHKELKTDQTHSNASASAQAALQAAQVISNSAGAAIVAGGGNALQPANGGTEIQGGPNTVLRVIIEHMLYPIVLDVLYSIFQRYGKVLKIVTFTKNNSFQALIQYPDTVSAQTAKTALDGQNIYNGCCTLRIDYSKMTCLNVKYNNDKSRDYTNPTLPSGDGDAHQLLTSGGVLAPQFLGLGSGLASPYGVGVGGVGLPAFGALTLTPASPALRALAAPPLPLATVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPHQAHLALTHMDKLRVFGKAMRVMLSKHQTVQLPKEGQPDAGLTRDYSQSPLHRFKKPGSKNYQNIYPPSATLHLSNIPATVTEEDIKDAFSKRGFTIKAFKFFPKDRKMALVQLSSIDDAVTALIKMHNYQLSESNHLRVSFSKSSI

Uniprot

A0A3S2M470   A0A194R198   A0A2H1V283   A0A1Y1K2N2   A0A1Y1JZN1   A0A1Y1K016   + More
A0A1Y1JZN6   A0A1Y1JZK8   A0A1Y1K7M1   A0A1Y1K7L2   A0A1Y1K2Q4   A0A1Y1K2P2   A0A1Y1K035   A0A1Y1JZL3   A0A1Y1K2P4   A0A212FB23   A0A139WBT4   K7J730   A0A1B6LM08   A0A1B6KR46   A0A1B6ETE8   A0A1B6HK58   A0A1B6HMP9   A0A1B6JVA8   A0A1B6HZH5   A0A1B6DRK8   A0A0C9QHP0   A0A1B6CQW8   A0A1B6CIA1   A0A0C9QWT6   A0A1B6LTS2   U5EZR3   A0A1B6CN94   A0A1Q3FTR8   A0A1Q3FTP4   W8B5A9   A0A1Q3FU40   W8AIY0   A0A1Q3FTK3   A0A1Q3FTY2   W8BFM8   A0A1Q3G1C1   A0A1Q3FTP1   A0A3R7PAJ9   W8AQZ2   A0A1Q3FTL4   W8AV00   A0A1Q3FU06   A0A1Q3G1C0   A0A034VSA2   A0A1J1I505   A0A0K8VCX3   A0A034VR94   A0A1I8M0Z5   A0A034VRA0   A0A0K8U7D6   A0A1W4VLU8   A0A1I8PG01   A0A194Q3K7   A0A0K8VZR3   A0A1W4VZY0   A0A1W4VM32   A0A1W4VYG7   B3LVE4   A0A0B4K6W9   B4IJ45   A0A0P9AN34   A0A0B4LHY1   B4QTB0   A0A0B4K6P4   Q8WR53   Q7KRS7   A0A0P8XWR8   A0A3B0KG51   Q95UI6   Q8IMF8   A8JRI1   A0A1I8PG87   T1P7L7   J9JUL5   A0A026WTC3   A0A0P6H4Q4   A0A1W4VZB7   A0A0A9ZC61   A0A0N8B8Q6   A0A0P5VQY5   Q16IC1   A0A1W4VYG3   A0A0Q9X083   A0A0Q9XCC7   A0A0A9WEP6   A0A0P5C910   A0A0K8SGN7   A0A0K8SA59   B4K859   A0A0P5C918   A0A0P8XWU6   E9GEU6   A0A0A9ZC66   Q7KES3  

Pubmed

26354079    28004739    22118469    18362917    19820115    20075255    + More
24495485    25348373    25315136    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    11804786    24508170    25401762    17510324    26823975    21292972   

EMBL

RSAL01000040    RVE50963.1    KQ460883    KPJ11289.1    ODYU01000346    SOQ34941.1    + More
GEZM01096618    JAV54758.1    GEZM01096608    JAV54772.1    GEZM01096622    JAV54753.1    GEZM01096606    JAV54774.1    GEZM01096621    JAV54754.1    GEZM01096612    JAV54767.1    GEZM01096619    JAV54757.1    GEZM01096609    JAV54771.1    GEZM01096611    JAV54768.1    GEZM01096607    JAV54773.1    GEZM01096614    JAV54764.1    GEZM01096616    JAV54761.1    AGBW02009387    OWR50936.1    KQ971372    KYB25386.1    AAZX01002966    AAZX01005944    AAZX01008283    AAZX01008561    AAZX01010264    AAZX01013204    AAZX01017040    AAZX01017275    AAZX01020952    AAZX01022065    GEBQ01015289    JAT24688.1    GEBQ01026069    JAT13908.1    GECZ01028540    JAS41229.1    GECU01032649    JAS75057.1    GECU01031738    JAS75968.1    GECU01004555    JAT03152.1    GECU01027637    JAS80069.1    GEDC01008993    JAS28305.1    GBYB01003049    JAG72816.1    GEDC01021613    JAS15685.1    GEDC01024243    JAS13055.1    GBYB01008194    JAG77961.1    GEBQ01012920    JAT27057.1    GANO01000309    JAB59562.1    GEDC01022440    JAS14858.1    GFDL01004107    JAV30938.1    GFDL01004110    JAV30935.1    GAMC01018089    JAB88466.1    GFDL01004102    JAV30943.1    GAMC01018090    JAB88465.1    GFDL01004104    JAV30941.1    GFDL01004109    JAV30936.1    GAMC01018086    JAB88469.1    GFDL01001448    JAV33597.1    GFDL01004108    JAV30937.1    QCYY01003104    ROT65304.1    GAMC01018088    JAB88467.1    GFDL01004105    JAV30940.1    GAMC01018087    JAB88468.1    GFDL01004103    JAV30942.1    GFDL01001452    JAV33593.1    GAKP01013955    JAC44997.1    CVRI01000040    CRK94842.1    GDHF01015919    GDHF01009131    GDHF01008096    GDHF01007263    JAI36395.1    JAI43183.1    JAI44218.1    JAI45051.1    GAKP01013959    GAKP01013958    GAKP01013957    GAKP01013956    GAKP01013954    JAC44994.1    GAKP01013953    JAC44999.1    GDHF01030089    GDHF01019940    JAI22225.1    JAI32374.1    KQ459586    KPI97995.1    GDHF01007988    GDHF01004259    JAI44326.1    JAI48055.1    CH902617    EDV41472.2    AE014297    AFH06716.1    CH480846    EDW50998.1    KPU79170.1    AHN57629.1    CM000364    EDX15172.1    AFH06715.1    AF455053    BT032832    AAF57208.2    AAL57860.1    AAO41621.1    AAO41622.1    AAO41624.1    AAO41625.1    AAO41626.1    ABW08818.1    ACD81846.1    ACZ95081.1    ACZ95087.1    AAO41623.2    KPU79171.1    OUUW01000007    SPP82618.1    AY052367    BT030984    AAL14775.1    AAO41627.1    ABV82366.1    ACZ95080.1    ACZ95083.1    AF211191    AAF22979.1    AAN14296.1    ACZ95084.1    ACZ95085.1    ACZ95086.1    ABW08816.1    KA644464    AFP59093.1    ABLF02032856    ABLF02032857    KK107109    EZA59198.1    GDIQ01255288    GDIQ01034664    JAN60073.1    GBHO01000752    JAG42852.1    GDIQ01201811    JAK49914.1    GDIQ01201812    GDIP01096752    JAK49913.1    JAM06963.1    CH478088    EAT34016.1    CH933806    KRG01542.1    KRG01544.1    GBHO01036682    GBHO01036679    GDHC01021097    JAG06922.1    JAG06925.1    JAP97531.1    GDIP01173814    JAJ49588.1    GBRD01013373    GBRD01013369    JAG52457.1    GBRD01016186    GBRD01008475    JAG49640.1    EDW15413.2    GDIP01173813    JAJ49589.1    KPU79169.1    GL732541    EFX81898.1    GBHO01000747    JAG42857.1    AF436844    AAL27010.1    ABW08817.1   

Proteomes

UP000283053    UP000053240    UP000007151    UP000007266    UP000002358    UP000283509    + More
UP000183832    UP000095301    UP000192221    UP000095300    UP000053268    UP000007801    UP000000803    UP000001292    UP000000304    UP000268350    UP000007819    UP000053097    UP000008820    UP000009192    UP000000305   

PRIDE

Q8WR53    Q7KRS7    Q95UI6    Q8IMF8    A8JRI1    Q7KES3    + More

Pfam

PF00076   RRM_1        + More
PF11835   RRM_8

Interpro

IPR000504   RRM_dom        + More
IPR021790   PTBP1_RRM       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR035979   RBD_domain_sf       
IPR034798   PTBP1/2/3_RRM2       
IPR006536   HnRNP-L/PTB       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

CDD

cd12693  RRM2_PTBP1_like

ProteinModelPortal

A0A3S2M470   A0A194R198   A0A2H1V283   A0A1Y1K2N2   A0A1Y1JZN1   A0A1Y1K016   + More
A0A1Y1JZN6   A0A1Y1JZK8   A0A1Y1K7M1   A0A1Y1K7L2   A0A1Y1K2Q4   A0A1Y1K2P2   A0A1Y1K035   A0A1Y1JZL3   A0A1Y1K2P4   A0A212FB23   A0A139WBT4   K7J730   A0A1B6LM08   A0A1B6KR46   A0A1B6ETE8   A0A1B6HK58   A0A1B6HMP9   A0A1B6JVA8   A0A1B6HZH5   A0A1B6DRK8   A0A0C9QHP0   A0A1B6CQW8   A0A1B6CIA1   A0A0C9QWT6   A0A1B6LTS2   U5EZR3   A0A1B6CN94   A0A1Q3FTR8   A0A1Q3FTP4   W8B5A9   A0A1Q3FU40   W8AIY0   A0A1Q3FTK3   A0A1Q3FTY2   W8BFM8   A0A1Q3G1C1   A0A1Q3FTP1   A0A3R7PAJ9   W8AQZ2   A0A1Q3FTL4   W8AV00   A0A1Q3FU06   A0A1Q3G1C0   A0A034VSA2   A0A1J1I505   A0A0K8VCX3   A0A034VR94   A0A1I8M0Z5   A0A034VRA0   A0A0K8U7D6   A0A1W4VLU8   A0A1I8PG01   A0A194Q3K7   A0A0K8VZR3   A0A1W4VZY0   A0A1W4VM32   A0A1W4VYG7   B3LVE4   A0A0B4K6W9   B4IJ45   A0A0P9AN34   A0A0B4LHY1   B4QTB0   A0A0B4K6P4   Q8WR53   Q7KRS7   A0A0P8XWR8   A0A3B0KG51   Q95UI6   Q8IMF8   A8JRI1   A0A1I8PG87   T1P7L7   J9JUL5   A0A026WTC3   A0A0P6H4Q4   A0A1W4VZB7   A0A0A9ZC61   A0A0N8B8Q6   A0A0P5VQY5   Q16IC1   A0A1W4VYG3   A0A0Q9X083   A0A0Q9XCC7   A0A0A9WEP6   A0A0P5C910   A0A0K8SGN7   A0A0K8SA59   B4K859   A0A0P5C918   A0A0P8XWU6   E9GEU6   A0A0A9ZC66   Q7KES3  

PDB

2MJU     E-value=6.91991e-73,     Score=698

KEGG

101740192    K13218 polypyrimidine tract-binding protein 1 | (RefSeq) polypyrimidine tract-binding protein 2

GO

GO:0003723   GO:0006397   GO:0005634   GO:0000976   GO:0016021   GO:0007319   GO:0005737   GO:0007291   GO:0003730   GO:1990904   GO:0008586   GO:0008103   GO:0008587   GO:0000900   GO:0003729   GO:0005829   GO:0007286   GO:0000166   GO:0003676   GO:0048869   GO:0016491   GO:0015930  

Length:

541

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.32776

Exp number, first 60 AAs:

0.0003

Total prob of N-in:

0.03193

outside

1  -  541

 

 

Pi

229.039213

Theta

175.946839

Tajima's D

0.458216

CLR

0.567002

CSRT

0.499725013749313

Interpretation

Uncertain